BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2009.p         (134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004215864.1| hypothetical protein Rahaq_5179 [Rahnella sp...   158   3e-37
gb|ADI22967.1| uncharacterized protein, possibly involved in uti...    78   4e-13
ref|YP_004234421.1| hypothetical protein Acav_1940 [Acidovorax a...    77   6e-13
ref|YP_971649.1| hypothetical protein Aave_3315 [Acidovorax citr...    77   8e-13
ref|ZP_08879012.1| ATP/cobalamin adenosyltransferase [Saccharopo...    75   3e-12

>ref|YP_004215864.1| hypothetical protein Rahaq_5179 [Rahnella sp. Y9602]
 gb|ADW76737.1| protein of unknown function DUF336 [Rahnella sp. Y9602]
          Length = 136

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 111/130 (85%)

Query: 1   MKSCIQLEYTDAQRILASCIDSANSLGVAASIAILDASGHFMALARMDGASFQTPEVARG 60
           MK+   L+Y DAQRI+ + I++A SLG+AASIA+LD +GH + LARMDGASFQTP+VARG
Sbjct: 1   MKTHSHLDYADAQRIVNASIEAAASLGLAASIAVLDPAGHLVLLARMDGASFQTPDVARG 60

Query: 61  KALTSAMMKKPSGVIETATQARITMVTFSDGRIPVQGAVPIFSQGQCVGAVGVSGGTPDQ 120
           KALTSAMMKKPSG+IETAT AR+T+ +F DGR+P+QG +P+FS  Q VGAVGVSGGTPDQ
Sbjct: 61  KALTSAMMKKPSGIIETATLARLTLASFDDGRLPIQGGLPVFSGDQLVGAVGVSGGTPDQ 120

Query: 121 DEIIAKAGAD 130
           DE IAKAG D
Sbjct: 121 DEAIAKAGID 130


>gb|ADI22967.1| uncharacterized protein, possibly involved in utilization of
           glycolate and propanediol [uncultured nuHF2 cluster
           bacterium HF0500_39O04]
          Length = 150

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 7/130 (5%)

Query: 12  AQRILASCIDSANSLGVAASIAILDASGHFMALARMDGASFQTPEVARGKALTSAMMKKP 71
           A++++ + I  A  +G++A+IAI+D  GH + L RMDG  F T   +  KA+T+A  ++P
Sbjct: 18  AKKMMGAAIKKAEKIGISATIAIVDGGGHMLLLERMDGGRFHTVHSSTTKAITAASNRRP 77

Query: 72  SGV-------IETATQARITMVTFSDGRIPVQGAVPIFSQGQCVGAVGVSGGTPDQDEII 124
           +         ++T     +++   S+    ++G  PIF   +CVG +GVSGG  +QD+ I
Sbjct: 78  TTTRGAQGQNLDTLHAIGLSLAAGSNQWTAMEGGFPIFYDKECVGGIGVSGGDWEQDQEI 137

Query: 125 AKAGADCLMA 134
           A+A  D + A
Sbjct: 138 AQAAVDAVGA 147


>ref|YP_004234421.1| hypothetical protein Acav_1940 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX45854.1| protein of unknown function DUF336 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 135

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 1   MKSCIQLEYTDAQRILASCIDSANSLGVAASIAILDASGHFMALARMDGASFQTPEVARG 60
           MK+  +LE+ D ++I A+    A   G A +IAI+D  GH ++L R+DGA+  +  +A G
Sbjct: 1   MKTKHELEFADVKKIAAAAEAEALRNGWAVTIAIVDDGGHLLSLQRLDGAAPLSSHIAPG 60

Query: 61  KALTSAMMKKPSGVIETATQ-ARITMVT--FSDGRIPVQGAVPIFSQGQCVGAVGVSGGT 117
           KA T+A+ ++ S V E      R   +T  F DG +  +G VPI   GQC+GAVGVSG  
Sbjct: 61  KARTAALGRRESKVYEDIINGGRTAFLTAPFIDGML--EGGVPILKDGQCLGAVGVSGVK 118

Query: 118 PDQDEIIAKAG 128
             +D  IA+AG
Sbjct: 119 SSEDAQIARAG 129


>ref|YP_971649.1| hypothetical protein Aave_3315 [Acidovorax citrulli AAC00-1]
 gb|ABM33875.1| protein of unknown function DUF336 [Acidovorax citrulli AAC00-1]
          Length = 135

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 1   MKSCIQLEYTDAQRILASCIDSANSLGVAASIAILDASGHFMALARMDGASFQTPEVARG 60
           MK+  +LE+ D ++I A+    A   G A +IAI+D  GH ++L R+DGA+  +  +A G
Sbjct: 1   MKTKPELEFADVKKIAAAAEAEAVRNGWAVTIAIVDDGGHLLSLQRLDGAAPLSSHIAPG 60

Query: 61  KALTSAMMKKPSGVIETATQ-ARITMVT--FSDGRIPVQGAVPIFSQGQCVGAVGVSGGT 117
           KA T+A+ ++ S V E      R   +T  F DG +  +G VPI   GQC+GAVGVSG  
Sbjct: 61  KARTAALGRRESKVYEDIINGGRTAFLTAPFIDGML--EGGVPILKDGQCLGAVGVSGVK 118

Query: 118 PDQDEIIAKAG 128
             +D  IA+AG
Sbjct: 119 SSEDAQIARAG 129


>ref|ZP_08879012.1| ATP/cobalamin adenosyltransferase [Saccharopolyspora spinosa NRRL
           18395]
 gb|AAS00436.1| hypothetical protein [Saccharopolyspora spinosa NRRL 18395]
          Length = 133

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 4/122 (3%)

Query: 12  AQRILASCIDSANSLGVAASIAILDASGHFMALARMDGASFQTPEVARGKALTSAMMKKP 71
           AQ+IL +  + A  +G  +SI+ILD+    +A  R DGA   +PE++  KA TSA MK P
Sbjct: 9   AQKILVAAAEKATEIGSPSSISILDSGREPVAFLRQDGALLASPEISSNKAYTSASMKMP 68

Query: 72  SGVIETATQARITMVTFSDGR----IPVQGAVPIFSQGQCVGAVGVSGGTPDQDEIIAKA 127
           +G +    Q           +    +   G VPI   G+ VGA+GV+GGT +QDE +AKA
Sbjct: 69  TGDLNELVQPGGPFFGLQTAQARPFVTFAGGVPILVDGEVVGAIGVAGGTGEQDEEVAKA 128

Query: 128 GA 129
           GA
Sbjct: 129 GA 130