BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2006.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003519881.1| YeaM [Pantoea ananatis LMG 20103] >gi|291152... 343 2e-92 dbj|BAK11003.1| putative HTH-type transcriptional regulator YeaM... 342 3e-92 ref|YP_004234382.1| AraC protein arabinose-binding/dimerization ... 340 2e-91 ref|YP_002909842.1| AraC family transcriptional regulator [Burkh... 339 3e-91 ref|XP_002534933.1| conserved hypothetical protein [Ricinus comm... 330 2e-88 >ref|YP_003519881.1| YeaM [Pantoea ananatis LMG 20103] gb|ADD76753.1| YeaM [Pantoea ananatis LMG 20103] Length = 294 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 165/261 (63%), Positives = 199/261 (76%) Query: 2 RKSETSSVLQDSLETFPRAVVAFTAKNVTKDWEKASHVHHKGQLLYSVRGVLNCYINRGI 61 R S ++V +++ PR + A +A ++ WE +H H K QLLYSVRGVLNC ++ G+ Sbjct: 15 RLSSLNAVALPDIDSIPRPIFALSASMISNGWEHETHQHRKSQLLYSVRGVLNCEVDEGM 74 Query: 62 WIVPPQCAVWIPPGVEHSAKGMGETECYCLFIDTVAAAGLPVDCCTISVSPLLRELLLKV 121 WIVPPQCAVWIP + HSA+G G TECYCLFI+ A LP CCT+SV+PLLRELLLK Sbjct: 75 WIVPPQCAVWIPGNMPHSARGSGNTECYCLFIEPEAIPALPKTCCTLSVNPLLRELLLKA 134 Query: 122 VGINPLYAEESPESRLVGTLLDEIVAAPVEAMHLPMPNDARLRRLAAMLLAEPAEKLSSH 181 G+ LY E PESRL+ TLLDE+ AAPVE +HLPMP D RLR+LA LLAEPA+K S Sbjct: 135 AGLPRLYPTEGPESRLIATLLDELSAAPVEDLHLPMPRDRRLRQLAEKLLAEPADKSSLG 194 Query: 182 AWAQRVAMSERTMSRILLREVGMSFGRWRRQLHIILALQRLAGGQSVQAVAFELGYEDAS 241 WA R+ MSERTMSR++L+E+GMSFG WRRQLH+IL+LQRL G+SVQ VA ELGYE+AS Sbjct: 195 EWAHRIGMSERTMSRLMLQEIGMSFGHWRRQLHVILSLQRLTRGESVQTVALELGYENAS 254 Query: 242 SFVTMFRKAVGKPPATYLQER 262 F+TMFRKAVGKPPA YL ER Sbjct: 255 GFITMFRKAVGKPPARYLFER 275 >dbj|BAK11003.1| putative HTH-type transcriptional regulator YeaM [Pantoea ananatis AJ13355] Length = 282 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 165/261 (63%), Positives = 199/261 (76%) Query: 2 RKSETSSVLQDSLETFPRAVVAFTAKNVTKDWEKASHVHHKGQLLYSVRGVLNCYINRGI 61 R S ++V +++ PR + A +A ++ WE +H H K QLLYSVRGVLNC ++ G+ Sbjct: 3 RLSSLNAVALPDIDSIPRPIFALSASMISNGWEHETHQHRKSQLLYSVRGVLNCEVDEGM 62 Query: 62 WIVPPQCAVWIPPGVEHSAKGMGETECYCLFIDTVAAAGLPVDCCTISVSPLLRELLLKV 121 WIVPPQCAVWIP + HSA+G G TECYCLFI+ A LP CCT+SV+PLLRELLLK Sbjct: 63 WIVPPQCAVWIPGNMPHSARGSGNTECYCLFIEPEAIPALPKTCCTLSVNPLLRELLLKA 122 Query: 122 VGINPLYAEESPESRLVGTLLDEIVAAPVEAMHLPMPNDARLRRLAAMLLAEPAEKLSSH 181 G+ LY E PESRL+ TLLDE+ AAPVE +HLPMP D RLR+LA LLAEPA+K S Sbjct: 123 AGLPRLYPTEGPESRLIATLLDELSAAPVEDLHLPMPRDRRLRQLAEKLLAEPADKSSLG 182 Query: 182 AWAQRVAMSERTMSRILLREVGMSFGRWRRQLHIILALQRLAGGQSVQAVAFELGYEDAS 241 WA R+ MSERTMSR++L+E+GMSFG WRRQLH+IL+LQRL G+SVQ VA ELGYE+AS Sbjct: 183 EWAHRIGMSERTMSRLMLQEIGMSFGHWRRQLHVILSLQRLTRGESVQTVALELGYENAS 242 Query: 242 SFVTMFRKAVGKPPATYLQER 262 F+TMFRKAVGKPPA YL ER Sbjct: 243 GFITMFRKAVGKPPARYLFER 263 >ref|YP_004234382.1| AraC protein arabinose-binding/dimerization [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45815.1| AraC protein arabinose-binding/dimerization [Acidovorax avenae subsp. avenae ATCC 19860] Length = 283 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 164/251 (65%), Positives = 195/251 (77%) Query: 14 LETFPRAVVAFTAKNVTKDWEKASHVHHKGQLLYSVRGVLNCYINRGIWIVPPQCAVWIP 73 ++ PR VVA +A +V +DWE A H HHK QL+YSVRG+L+C I G+WIVPPQCA+WIP Sbjct: 15 VDNVPRPVVALSATSVARDWENARHQHHKAQLIYSVRGILHCEIEDGVWIVPPQCAIWIP 74 Query: 74 PGVEHSAKGMGETECYCLFIDTVAAAGLPVDCCTISVSPLLRELLLKVVGINPLYAEESP 133 + HSA+G GETE +CLF++ AA LP CCTI+VSPLLRELLLKV G LYA Sbjct: 75 GDLPHSARGSGETEIHCLFVEPDAAPDLPKSCCTIAVSPLLRELLLKVAGFPGLYALGGR 134 Query: 134 ESRLVGTLLDEIVAAPVEAMHLPMPNDARLRRLAAMLLAEPAEKLSSHAWAQRVAMSERT 193 E RL+ LLDE+V APVE +HLPMP D RLRRLA MLL++P +K S WA R+ MSER+ Sbjct: 135 EDRLIAALLDELVEAPVEDLHLPMPRDPRLRRLAEMLLSDPTDKTSKADWATRIGMSERS 194 Query: 194 MSRILLREVGMSFGRWRRQLHIILALQRLAGGQSVQAVAFELGYEDASSFVTMFRKAVGK 253 MSR+LL E+GM FGRWRRQLH+ILALQRL G+SVQ VA+ELGYE+AS FVTMFRKAVGK Sbjct: 195 MSRLLLHELGMGFGRWRRQLHVILALQRLTRGESVQTVAWELGYENASGFVTMFRKAVGK 254 Query: 254 PPATYLQERKH 264 PPA YL +R H Sbjct: 255 PPARYLSDRTH 265 >ref|YP_002909842.1| AraC family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR32606.1| AraC family transcriptional regulator [Burkholderia glumae BGR1] Length = 283 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 165/257 (64%), Positives = 193/257 (75%) Query: 6 TSSVLQDSLETFPRAVVAFTAKNVTKDWEKASHVHHKGQLLYSVRGVLNCYINRGIWIVP 65 T ++ ++ PR VVA +A VTKDWE A H H + QLLYSVRG+LNC I G+WIVP Sbjct: 7 TDLIVSKDVDNVPRPVVALSAMTVTKDWEHAKHRHRRAQLLYSVRGILNCEIEDGVWIVP 66 Query: 66 PQCAVWIPPGVEHSAKGMGETECYCLFIDTVAAAGLPVDCCTISVSPLLRELLLKVVGIN 125 PQCAVWIP + H+A+G GETEC+CLF++ AA LP CCTISVSPLLRELLLKV Sbjct: 67 PQCAVWIPGDLPHAARGSGETECHCLFVEPDAAPDLPKSCCTISVSPLLRELLLKVACFP 126 Query: 126 PLYAEESPESRLVGTLLDEIVAAPVEAMHLPMPNDARLRRLAAMLLAEPAEKLSSHAWAQ 185 LY S E RL+ LLDE+ APVE +HLPMP D RLRRLA MLL +P +K S WA Sbjct: 127 ELYPLGSREDRLIAVLLDELAMAPVEDLHLPMPRDPRLRRLAEMLLTDPTDKTSKGDWAT 186 Query: 186 RVAMSERTMSRILLREVGMSFGRWRRQLHIILALQRLAGGQSVQAVAFELGYEDASSFVT 245 R+ MSER+MSR+L+ E+GMSFGRW RQLH+ILALQRL G+SVQ VA ELGYE+AS FVT Sbjct: 187 RIGMSERSMSRLLMHEIGMSFGRWCRQLHVILALQRLTKGESVQTVALELGYENASGFVT 246 Query: 246 MFRKAVGKPPATYLQER 262 MFRKAVGKPPA YL +R Sbjct: 247 MFRKAVGKPPARYLADR 263 >ref|XP_002534933.1| conserved hypothetical protein [Ricinus communis] gb|EEF27450.1| conserved hypothetical protein [Ricinus communis] Length = 279 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 172/272 (63%), Positives = 202/272 (74%), Gaps = 1/272 (0%) Query: 6 TSSVLQDSLETFPRAVVAFTAKNVTKDWEKASHVHHKGQLLYSVRGVLNCYINRGIWIVP 65 T + ++ PR VVA +A +VTK WE A H H + QLLYSVRG+LNC I G+WIVP Sbjct: 7 TDLTVAKDVDNAPRPVVALSAMSVTKGWEHARHRHRRAQLLYSVRGILNCEIENGVWIVP 66 Query: 66 PQCAVWIPPGVEHSAKGMGETECYCLFIDTVAAAGLPVDCCTISVSPLLRELLLKVVGIN 125 PQCAVWIP + HSA+G GETEC+CLF++ AA+ LP CCTISVSPLLRELLLKV G Sbjct: 67 PQCAVWIPGDLPHSARGSGETECHCLFVEPDAASDLPKTCCTISVSPLLRELLLKVAGFP 126 Query: 126 PLYAEESPESRLVGTLLDEIVAAPVEAMHLPMPNDARLRRLAAMLLAEPAEKLSSHAWAQ 185 LY E RL+ LLDE+ AAPVE +HLPMP D RLRRLA MLLA+P +K S WA Sbjct: 127 ALYPSGGREDRLIAALLDELAAAPVEDLHLPMPRDPRLRRLAEMLLADPIDKASKGDWAT 186 Query: 186 RVAMSERTMSRILLREVGMSFGRWRRQLHIILALQRLAGGQSVQAVAFELGYEDASSFVT 245 R+ MSER+MSR+LL E+GMSFGRWRRQLH+ILALQRL G+SVQ VA ELGYE+AS F+T Sbjct: 187 RIGMSERSMSRLLLHEIGMSFGRWRRQLHVILALQRLTSGESVQTVALELGYENASGFIT 246 Query: 246 MFRKAVGKPPATYLQERKHDLH-FPVSTIILP 276 MFRKAVGKPPA YL +R + V I+LP Sbjct: 247 MFRKAVGKPPARYLSDRTTNAQSAAVRGIVLP 278