BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2005.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08643897.1| transcriptional regulator LysR [Acetobacter t... 345 5e-93 ref|YP_001860201.1| LysR family transcriptional regulator [Burkh... 258 6e-67 ref|ZP_08505441.1| Transcriptional regulator, LysR family [Methy... 212 5e-53 ref|YP_004482637.1| LysR family transcriptional regulator [Marin... 211 1e-52 ref|YP_004753069.1| LysR family transcriptional regulator [Colli... 204 2e-50 >ref|ZP_08643897.1| transcriptional regulator LysR [Acetobacter tropicalis NBRC 101654] dbj|GAA07201.1| transcriptional regulator LysR [Acetobacter tropicalis NBRC 101654] Length = 293 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 184/292 (63%), Positives = 224/292 (76%) Query: 1 MDLIAHLKIFIDIADHGSLAGAARARNMAPSAITASLHRLEAHLGAQLVMRSTRKLALSQ 60 MD++AH++IF+DIAD+GSLA ARAR +APSA+TASL RLE ++GA+L +RSTR+L+L+ Sbjct: 2 MDVLAHIRIFLDIADNGSLAAVARARRLAPSAVTASLRRLEEYVGARLALRSTRRLSLTP 61 Query: 61 EGAQFLDHARHIVRDLEDACDQVARTGALRGAIRISSLSDFGRTTLPKHIDAFLALHPNV 120 EG QF R ++ L+D DQ G L+G IRI+SLSDFGRT L + ID F+A HP V Sbjct: 62 EGEQFARQCRELLLTLDDVIDQAGGDGPLKGVIRITSLSDFGRTRLWEVIDGFIAHHPAV 121 Query: 121 RFELNLDDRVVDLIDGGYDIAIRTGPLVDSRLKARLIAHAGRSVCAAPGYWKSRGKPVKP 180 RF+L+L D V DLI GGYD+ +RTGPL DSRLKARLI GRSVCAAP YW GKP +P Sbjct: 122 RFDLSLSDDVTDLIKGGYDLGLRTGPLSDSRLKARLIMRGGRSVCAAPSYWGIHGKPDRP 181 Query: 181 TDLKTHNCLVLSRAGAPQASWRFVENDLPVAVDVGGDRMASDGGLLRQWAVAGAGVVLKS 240 DL +HNCLVLSR G PQ+ WRF + V+V+V GDR A+DG LLRQWAVAGAGVVLK+ Sbjct: 182 EDLASHNCLVLSRKGDPQSIWRFHDGSTLVSVNVSGDRTANDGALLRQWAVAGAGVVLKT 241 Query: 241 DYDVQEDLAAGRLETALDDYKEQDINIYAVHSASRYLSRRAKLFLDFLAQAC 292 DYDV DL AGRLETALD +K+ DINIYAVH+A + LSRR + FLD+L C Sbjct: 242 DYDVAADLQAGRLETALDAFKQDDINIYAVHAAGQNLSRRVQAFLDYLVDVC 293 >ref|YP_001860201.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73155.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 308 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 132/293 (45%), Positives = 199/293 (67%), Gaps = 1/293 (0%) Query: 1 MDLIAHLKIFIDIADHGSLAGAARARNMAPSAITASLHRLEAHLGAQLVMRSTRKLALSQ 60 MD + L++F++IA+ GS + AAR ++ S +T +L +LE +GA+L+MR+TR+LA + Sbjct: 1 MDRLDALRLFVEIAEAGSFSAAARKSTVSTSTVTLALQKLEEEVGARLIMRTTRRLAFTH 60 Query: 61 EGAQFLDHARHIVRDLEDACDQVARTGALRGAIRISSLSDFGRTTLPKHIDAFLALHPNV 120 EG +FLD AR ++ D + A + G L G IR+++ +DFGRT + +D F++L+P V Sbjct: 61 EGQRFLDDARRVLADWDAAILSLREDGPLNGPIRLTASTDFGRTRVVPLLDKFMSLYPQV 120 Query: 121 RFELNLDDRVVDLIDGGYDIAIRTGPLVDSRLKARLIAHAGRSVCAAPGYWKSRGKPVKP 180 + L L D VVDL+D D+A+R GPL+D RLKARL+ R VCAAP YW + GK + P Sbjct: 121 QVSLLLTDGVVDLVDQHLDLALRHGPLIDPRLKARLLLTGPRVVCAAPSYWAAHGKAMHP 180 Query: 181 TDLKTHNCLVLSRAGAPQASWRFVENDLPVAVDVGGDRMASDGGLLRQWAVAGAGVVLKS 240 + L +HNCL+L+R AP +W FV + +AV V G+R+ASDG +LR+WAV G GV+LK+ Sbjct: 181 SQLSSHNCLILARPDAPFTNWPFVVDGKQIAVRVSGNRVASDGSVLREWAVNGYGVILKN 240 Query: 241 DYDVQEDLAAGRLETALDDYKEQDINIYAVHSASRYLSRRAKLFLDFLAQACA 293 +DV +L +G LETALD Y + ++++AV++ + SRR +DF+A+ A Sbjct: 241 RWDVYHELISGSLETALDQYIGERVDLFAVYAGA-VPSRRVGTLIDFIARELA 292 >ref|ZP_08505441.1| Transcriptional regulator, LysR family [Methyloversatilis universalis FAM5] gb|EGK71117.1| Transcriptional regulator, LysR family [Methyloversatilis universalis FAM5] Length = 314 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 124/291 (42%), Positives = 173/291 (59%), Gaps = 1/291 (0%) Query: 4 IAHLKIFIDIADHGSLAGAARARNMAPSAITASLHRLEAHLGAQLVMRSTRKLALSQEGA 63 ++ L++F+ IAD GSL+ AAR + P+A +A+L RLEA GA+LV RSTR + L+ EG Sbjct: 12 LSQLELFVRIADAGSLSAAARQLQLTPAAASAALKRLEAAFGARLVERSTRSMRLTGEGE 71 Query: 64 QFLDHARHIVRDLEDACDQV-ARTGALRGAIRISSLSDFGRTTLPKHIDAFLALHPNVRF 122 DHAR + +L+DA Q+ A L G I +++ SD GR L +D F+ HP VR Sbjct: 72 LLRDHARRALGELDDARAQLGAGRETLSGDIHLAAPSDLGRGALSAMLDRFIEQHPGVRL 131 Query: 123 ELNLDDRVVDLIDGGYDIAIRTGPLVDSRLKARLIAHAGRSVCAAPGYWKSRGKPVKPTD 182 L L D V DL+ D+A+R G L DS L AR + R + A+P Y + G P +P D Sbjct: 132 TLYLSDTVQDLVRERVDLAVRYGELPDSSLVARRLHVTRRVLVASPAYIERHGAPQQPAD 191 Query: 183 LKTHNCLVLSRAGAPQASWRFVENDLPVAVDVGGDRMASDGGLLRQWAVAGAGVVLKSDY 242 L HNCLVL R G P +WRF+ V V G+RMA DG ++RQWA+ G G+ K+ Sbjct: 192 LGRHNCLVLYRGGRPHLTWRFMRAGTETRVRVQGNRMAWDGAIVRQWALEGLGIATKARL 251 Query: 243 DVQEDLAAGRLETALDDYKEQDINIYAVHSASRYLSRRAKLFLDFLAQACA 293 DV +DL +GRL L D++ +D ++A+ A R++ R + LDFL A Sbjct: 252 DVADDLRSGRLVELLTDWRGEDFPLHALLPAGRHMPLRVRRLLDFLGDCFA 302 >ref|YP_004482637.1| LysR family transcriptional regulator [Marinomonas posidonica IVIA-Po-181] gb|AEF55718.1| transcriptional regulator, LysR family [Marinomonas posidonica IVIA-Po-181] Length = 303 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 105/292 (35%), Positives = 178/292 (60%), Gaps = 1/292 (0%) Query: 1 MDLIAHLKIFIDIADHGSLAGAARARNMAPSAITASLHRLEAHLGAQLVMRSTRKLALSQ 60 MD ++ FI ++ +GSL+ AR N+ PSA+T L LEA LG +L+ R+TR+L+L+ Sbjct: 1 MDTLSEFTFFITLSRNGSLSSTARELNLTPSAVTKRLSNLEARLGVRLINRTTRRLSLTN 60 Query: 61 EGAQFLDHARHIVRDLEDACDQVA-RTGALRGAIRISSLSDFGRTTLPKHIDAFLALHPN 119 EG +L + ++IV +++ V+ R + +G +R+++ FGR + I F+ +P+ Sbjct: 61 EGEIYLKYVKNIVSQIDEMESVVSKRRDSPKGLLRVNAPLGFGRNYIAPIISEFINEYPD 120 Query: 120 VRFELNLDDRVVDLIDGGYDIAIRTGPLVDSRLKARLIAHAGRSVCAAPGYWKSRGKPVK 179 + +L L DR + L D D+ IR G + DSR+ AR IA R +CAAP Y+K GKP+ Sbjct: 121 IEVQLILTDRPISLPDESIDVCIRFGTVPDSRVFARKIAPNRRLICAAPKYFKEHGKPLV 180 Query: 180 PTDLKTHNCLVLSRAGAPQASWRFVENDLPVAVDVGGDRMASDGGLLRQWAVAGAGVVLK 239 PTDL +HNC+++ ++ +WRF+ ++ + V G+ + +DG + +WA+ G G+V++ Sbjct: 181 PTDLLSHNCIIIKQSQQVATAWRFILDNTEEVIKVRGNLVTNDGEIALRWALDGHGIVMR 240 Query: 240 SDYDVQEDLAAGRLETALDDYKEQDINIYAVHSASRYLSRRAKLFLDFLAQA 291 +++D+ + + G+LE AL Y + +IYAV+ LS R FLD+L + Sbjct: 241 AEWDLAKYIRQGKLEVALGHYDTPNADIYAVYMEKLNLSARVTCFLDYLKDS 292 >ref|YP_004753069.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62246.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 301 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 119/294 (40%), Positives = 175/294 (59%), Gaps = 2/294 (0%) Query: 1 MDLIAHLKIFIDIADHGSLAGAARARNMAPSAITASLHRLEAHLGAQLVMRSTRKLALSQ 60 MD + F+++A GSL+ AARA +AP+ I L LE LG +L+ R+TRK+AL+ Sbjct: 1 MDQFKQISTFVEVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTN 60 Query: 61 EGAQFLDHARHIVRDLEDACDQVA-RTGALRGAIRISSLSDFGRTTLPKHIDAFLALHPN 119 EG FL+ + I+ DLE+A V+ R+ G + IS+ + FGR + + +FL H + Sbjct: 61 EGEAFLEDCQRILSDLENAESAVSERSAHASGHLLISAPAGFGRQHVAPLMPSFLTEHRD 120 Query: 120 VRFELNLDDRVVDLIDGGYDIAIRTGPLVDSRLKARLIAHAGRSVCAAPGYWKSRGKPVK 179 V LNL+DRVVDLI G D+AIR L DS L +A R V A+P Y K GKP Sbjct: 121 VTLTLNLNDRVVDLIGEGIDVAIRIASLSDSSLVGAKLADNKRIVVASPAYIKRHGKPRT 180 Query: 180 PTDLKTHNCLVLSRAGAPQASWRFVENDLPVAVDVGGDRMASDGGLLRQWAVAGAGVVLK 239 DL+ HNCL +S G+ Q W F ++ V V V G+ + +DG +L WA+AG G+ + Sbjct: 181 VDDLQKHNCLAISSEGS-QRGWSFRQHGKIVTVRVAGNMVCNDGQVLHDWALAGKGLAWR 239 Query: 240 SDYDVQEDLAAGRLETALDDYKEQDINIYAVHSASRYLSRRAKLFLDFLAQACA 293 S ++V ++ +G+L T LD++ +IYAV + R+L R ++F+DFL +A A Sbjct: 240 SMWEVGSEIESGKLVTVLDEFAAPGNDIYAVFAQRRHLPLRIRVFVDFLRRAYA 293