BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2000.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_881444.1| hypothetical protein BP2856 [Bordetella pertuss... 189 8e-46 ref|YP_003405374.1| hypothetical protein Htur_3841 [Haloterrigen... 181 2e-43 ref|YP_004335470.1| peptidase S15 [Pseudonocardia dioxanivorans ... 178 1e-42 ref|YP_003979161.1| X-Pro dipeptidyl-peptidase family protein [A... 178 1e-42 ref|YP_645179.1| peptidase S15 [Rubrobacter xylanophilus DSM 994... 169 8e-40 >ref|NP_881444.1| hypothetical protein BP2856 [Bordetella pertussis Tohama I] emb|CAE43128.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gb|AEE68049.1| hypothetical protein BPTD_2808 [Bordetella pertussis CS] Length = 309 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 113/296 (38%), Positives = 163/296 (55%), Gaps = 6/296 (2%) Query: 55 EIIHFQSEGDTCAGTIYRPEGDG-PFPAVLLSHGFGAVRTMRNIPEVATLLAEAGILALA 113 E I F +GD GT YRP G G P PAV+L+HG+ V ++ + A + G+ AL Sbjct: 16 EPIEFMLDGDCIRGTFYRPAGAGAPVPAVVLAHGWSMV-AGGDLEDYAAAVVNRGLAALT 74 Query: 114 IDFRYLGDSGGEPRQQVRPTAQRQDLGNALSYLETREDVRTDRLGLWGTSFSGGQSLRIA 173 DFR LG SG PRQ++ P Q +D A+SY+ R +V +R+G+WG+S+SGG +L +A Sbjct: 75 FDFRNLGKSGSLPRQEIDPYRQVEDFRAAISYVRGRPEVDRERIGIWGSSYSGGHALTVA 134 Query: 174 AFDKRVKALVAQVPATDLYRQIKFEAPPEHRKLLESTIAAERPRHFGQLAPATMKLADED 233 A D+RVK +V+QVP T + + + + L++ A+R F PAT+++ D D Sbjct: 135 AIDRRVKCVVSQVPTTSGFSAAQRRVRYDKAQALQAAFEADREARFAGAEPATLRMVDPD 194 Query: 234 GKPSVF--GVESWEWAQNNVREHETFHNAVTVSSLEEALQTAPADYIESIAPTPLLVIMA 291 + V G +S+ + R + NAVT+ SLE A P Y IAPTPLL+I+A Sbjct: 195 PEAPVAYPGPDSYRYMTGEARRCPQWVNAVTLRSLELARTYEPGVYARRIAPTPLLMIVA 254 Query: 292 EPDKTVLTKFTKAAFERAGEPKKLITYAGLHYDVYDKPEILAMASKAARDWFVTYL 347 D + AF A +PK+L+ G HY VY + S+AA DWF +L Sbjct: 255 ASDGLTPADLQQDAFNNAQQPKELLLLPGGHYSVYT--DHFDRTSQAAADWFALHL 308 >ref|YP_003405374.1| hypothetical protein Htur_3841 [Haloterrigena turkmenica DSM 5511] gb|ADB62701.1| conserved hypothetical protein [Haloterrigena turkmenica DSM 5511] Length = 298 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 107/297 (36%), Positives = 169/297 (56%), Gaps = 7/297 (2%) Query: 55 EIIHFQSEGDTCAGTIYRPE-GDGPFPAVLLSHGFGAVRTMRNIPEVATLLAEAGILALA 113 E I F+++G T G +Y P+ + P P ++L+HGF AV+ M + + A AEAG+ ++ Sbjct: 3 EDIEFEADGATLRGWLYTPDDAEEPVPTIVLAHGFSAVKEMY-LDKFAEAFAEAGLGSVV 61 Query: 114 IDFRYLGDSGGEPRQQVRPTAQRQDLGNALSYLETREDVRTDRLGLWGTSFSGGQSLRIA 173 D R G+S GEPR ++ P Q +D +A++Y ETRE+V DR+G+WGTS+SGG +L + Sbjct: 62 FDNRNFGESDGEPRYEIDPYQQVRDYRHAITYAETREEVDADRIGVWGTSYSGGHALTVG 121 Query: 174 AFDKRVKALVAQVPATDLYRQIKFEAPPEHRKLLESTIAAERPRHFGQLAPATMKLADED 233 A+D RV +V+QVP TD ++ + L I +R F P+ + + ED Sbjct: 122 AWDTRVDCVVSQVPLTDGLYNLRRLVRADIIGDLREQINEDRRARFRGEDPSYLPVVSED 181 Query: 234 --GKPSVFGVESWEW-AQNNVREHETFHNAVTVSSLEEALQTAPADYIESIAPTPLLVIM 290 G ++ +S+EW + + + N VT+ ++E + AP D++E I+PTPL +++ Sbjct: 182 LLGDAALPTQDSYEWFTETKEKRAPNWENEVTLKTIELMSEYAPKDHVEEISPTPLRMVI 241 Query: 291 AEPDKTVLTKFTKAAFERAGEPKKLITYAGLHYDVYDKPEILAMASKAARDWFVTYL 347 AE D + +ERA EPK ++T G H+D Y E AS AA +WF +L Sbjct: 242 AEEDHLAVKDAAFETYERAREPKSIVTLDGGHFDAYT--EGFEEASTAAIEWFDEHL 296 >ref|YP_004335470.1| peptidase S15 [Pseudonocardia dioxanivorans CB1190] gb|AEA27617.1| peptidase S15 [Pseudonocardia dioxanivorans CB1190] Length = 299 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 113/295 (38%), Positives = 157/295 (53%), Gaps = 7/295 (2%) Query: 57 IHFQSEGDTCAGTIYRPEG-DGPFPAVLLSHGFGAVRTMRNIPEVATLLAEAGILALAID 115 I F +EG G Y EG DG P V+++HGF AV+ M + A + A AG+ AL D Sbjct: 6 IEFDAEGVVLRGWFYEAEGADGRAPTVVMAHGFSAVKEMY-LDSFAEVFAAAGLNALVFD 64 Query: 116 FRYLGDSGGEPRQQVRPTAQRQDLGNALSYLETREDVRTDRLGLWGTSFSGGQSLRIAAF 175 R G S GEPRQ++ P AQ +D +A++Y TR+DV R+G+WG+S+SGG L + A Sbjct: 65 NRNFGASDGEPRQEIDPWAQVRDYRHAITYATTRDDVDATRIGIWGSSYSGGHVLVVGAI 124 Query: 176 DKRVKALVAQVPATDLYRQIKFEAPPEHRKLLESTIAAERPRHFGQLAPATMKLADEDG- 234 D+RVKA+VAQVP I + R A+R F PA + + ED Sbjct: 125 DRRVKAVVAQVPLVSGSANIGELVRADFRAGFREMFDADRVARFAGDPPAMVPVVAEDPL 184 Query: 235 KPSVFGV-ESWEW-AQNNVREHETFHNAVTVSSLEEALQTAPADYIESIAPTPLLVIMAE 292 PS +SW W + ++ N VT+ ++E + P Y+ I+PTPLL+++A Sbjct: 185 APSALPTPDSWTWFTETGKLRAPSWRNEVTLRTVEMLGEYEPGGYLPRISPTPLLMVVAR 244 Query: 293 PDKTVLTKFTKAAFERAGEPKKLITYAGLHYDVYDKPEILAMASKAARDWFVTYL 347 D + AFE A EPKKL+ G H+D Y + AS ARDWFV +L Sbjct: 245 EDHLTPSHLAIDAFESAREPKKLVILPGGHFDAY--VDGFDQASAPARDWFVEHL 297 >ref|YP_003979161.1| X-Pro dipeptidyl-peptidase family protein [Achromobacter xylosoxidans A8] gb|ADP16446.1| X-Pro dipeptidyl-peptidase family protein [Achromobacter xylosoxidans A8] Length = 289 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 109/289 (37%), Positives = 156/289 (53%), Gaps = 6/289 (2%) Query: 62 EGDTCAGTIYRPE-GDGPFPAVLLSHGFGAVRTMRNIPEVATLLAEAGILALAIDFRYLG 120 EGD GT Y P GP AV L+HG+ V ++ E A + G+ AL DFR+LG Sbjct: 3 EGDLVRGTFYLPSNAAGPVAAVALAHGWSMV-AGGDLEEYAAAVVAQGLAALTFDFRHLG 61 Query: 121 DSGGEPRQQVRPTAQRQDLGNALSYLETREDVRTDRLGLWGTSFSGGQSLRIAAFDKRVK 180 S G PRQ++ P Q QD +A+SYL R +V +R+G+WG+S+SGG +L +AA D+RVK Sbjct: 62 RSEGMPRQEIDPQRQIQDFRSAISYLRRRPEVDRERIGIWGSSYSGGHALTVAAIDRRVK 121 Query: 181 ALVAQVPATDLYRQIKFEAPPEHRKLLESTIAAERPRHFGQLAPATMKLADEDGKPSVF- 239 +V+QVP T + + + + L++ A+R PAT+++ D D +V Sbjct: 122 CVVSQVPTTSGFSAAQRRVRYDKAQALQAAFEADREARDAGQPPATLRMVDADPDAAVAY 181 Query: 240 -GVESWEWAQNNVREHETFHNAVTVSSLEEALQTAPADYIESIAPTPLLVIMAEPDKTVL 298 G +S+ + R + N VT+ SLE A P Y+ IAPTPLL+I+A D Sbjct: 182 PGPDSYNYMTGEARRCPAWVNEVTLRSLELARAYEPGMYVRRIAPTPLLMIVATGDGLTP 241 Query: 299 TKFTKAAFERAGEPKKLITYAGLHYDVYDKPEILAMASKAARDWFVTYL 347 + AF A +PK+L+ G HY VY E S AA +WF +L Sbjct: 242 ADLQQDAFNAAHQPKELLLLPGGHYSVYT--EHFERTSSAAANWFAQHL 288 >ref|YP_645179.1| peptidase S15 [Rubrobacter xylanophilus DSM 9941] gb|ABG05367.1| peptidase S15 [Rubrobacter xylanophilus DSM 9941] Length = 298 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 14/299 (4%) Query: 57 IHFQSEGDTCAGTIYRP-EGDGPFPAVLLSHGFGAVRTMRNIPEVATLLAEAGILALAID 115 + F +EG T G +Y P E P P ++++HGF AV+ M + A + AEAG+ AL D Sbjct: 5 VEFDAEGVTLRGWLYLPDEARNPVPTIVMAHGFSAVKEMY-LDRYAEVFAEAGLGALVYD 63 Query: 116 FRYLGDSGGEPRQQVRPTAQRQDLGNALSYLETREDVRTDRLGLWGTSFSGGQSLRIAAF 175 R G S G RQ++ P Q +D +A++Y E+ +V DR+G+WG+S+SGG L + A Sbjct: 64 NRNFGASDGHVRQEIDPWQQVRDYRHAITYAESLPEVDGDRIGVWGSSYSGGHVLVLGAI 123 Query: 176 DKRVKALVAQVPATDLYRQIKFEAPPEHRKLLESTI---AAERPRHFGQLAPATMKLADE 232 D+R+K +V+QVP + + R L+ T+ +R + PA + + E Sbjct: 124 DRRIKCVVSQVPLISGHENFRALV---RRDLVAPTLRMFEEDRRARYAGAEPAKIAVVAE 180 Query: 233 DGKPSVFGV---ESWEWAQNNVREHE-TFHNAVTVSSLEEALQTAPADYIESIAPTPLLV 288 D + + +SWEW + N VTV S+E + P Y++ ++PTPL++ Sbjct: 181 DPGSTPCALPTPDSWEWFTKTAGSRAPAWRNEVTVRSVEMFTEYEPGTYVQWVSPTPLMI 240 Query: 289 IMAEPDKTVLTKFTKAAFERAGEPKKLITYAGLHYDVYDKPEILAMASKAARDWFVTYL 347 ++A D AA+ERA EPK+L+ G H+D Y E AS AARDWFV +L Sbjct: 241 VVAAGDHLTPADLALAAYERALEPKELVLLPGGHFDAY--VEDFEAASGAARDWFVEHL 297