BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1997.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002873656.1| hypothetical protein PFLU4106 [Pseudomonas f... 265 2e-68 ref|YP_004474118.1| major facilitator superfamily MFS_1 [Pseudom... 260 3e-67 ref|ZP_07774643.1| major facilitator family transporter [Pseudom... 230 3e-58 ref|YP_004354991.1| hypothetical protein PSEBR_a3641 [Pseudomona... 228 1e-57 ref|YP_260465.1| major facilitator family transporter [Pseudomon... 112 8e-23 >ref|YP_002873656.1| hypothetical protein PFLU4106 [Pseudomonas fluorescens SBW25] emb|CAY50571.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 394 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 177/374 (47%), Positives = 243/374 (64%), Gaps = 2/374 (0%) Query: 10 ASHNVDSGKTLGLLGFLMMIGVGTLQMQPVLGGALVDHWGLNLQQMGMLFGAELIAMAIG 69 A ++DS ++LG + +M+I +GTLQ+QP+LGGAL+D G+ L +G++F AELIAMAI Sbjct: 4 ALDSIDSKQSLGAICLMMVISLGTLQIQPILGGALIDQLGVPLNAIGVIFAAELIAMAIA 63 Query: 70 CGTSALVVNHWDRRRLCQGGLLLLAGGS-ALSALHGTYWLLCASRALAGFGGGVAQTVVY 128 CG AL++ DRRR + LL+LA G+ A + LH WL+ R + G GG VVY Sbjct: 64 CGVCALLMARVDRRRFARVALLILAVGNLASTQLHSQTWLVIL-RIICGASGGAVMAVVY 122 Query: 129 ATSAQRSNKDRTYAATNIILLLWGAVSIGAAPLLISAAGVGAVFLSFPLMALPALAMTRL 188 AT+A R +KD T+A NI LLWG + + + PLL+ GV F + +L A Sbjct: 123 ATAALRRSKDATFAVINIGNLLWGMLLVTSMPLLLQVFGVRGAFGLLAITSLLAALGCGR 182 Query: 189 IPSQPGEARSIQPMVAPPLNLRTTLLLLLFGLLFAGHGVLWVYQERIGVSIGLPGPVIGA 248 IP +A+ I A P L + LL+ LF LLF GH LWVYQERIG S+GL IGA Sbjct: 183 IPRYYPDAQRIAHGAARPFGLTSLLLIALFALLFFGHSALWVYQERIGKSLGLEPQQIGA 242 Query: 249 ILGLSTLAGAAGAAIAGMLGRRLGHMSAQVIGFAGSIAASLTIVHGQTQLVYATSAALIM 308 ILG S LAGA GA ++G++GRRLG + Q++ F ++ A+L +V+G + + +AT+A LI Sbjct: 243 ILGGSILAGALGAGLSGLIGRRLGLLFPQLLSFGAALVATLIMVYGDSTVAFATTACLIH 302 Query: 309 AVWFFGLTYLFALSAEFDPTGRLTSLANAAVFVGQGVGPVMAAMIVSGNNFRMVGWLAAS 368 VWFF L YL +++AE DP+GRL L NAA+F+GQG+GP AA++V +FR VGWLAA Sbjct: 303 MVWFFSLPYLLSMAAELDPSGRLAGLGNAAIFIGQGLGPFGAALVVGEGHFRAVGWLAAC 362 Query: 369 IYAISLIIALYVTA 382 Y ++LII+ V A Sbjct: 363 AYGLALIISCLVVA 376 >ref|YP_004474118.1| major facilitator superfamily MFS_1 [Pseudomonas fulva 12-X] gb|AEF22024.1| major facilitator superfamily MFS_1 [Pseudomonas fulva 12-X] Length = 393 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 186/376 (49%), Positives = 246/376 (65%) Query: 14 VDSGKTLGLLGFLMMIGVGTLQMQPVLGGALVDHWGLNLQQMGMLFGAELIAMAIGCGTS 73 V+S +TL + +M+I +GTLQ+QP+LGGA VD G+ L +G +F AELIAMA+ CG S Sbjct: 7 VNSKRTLLAICMMMVISLGTLQVQPILGGAFVDRLGIPLNAIGAIFAAELIAMAVACGVS 66 Query: 74 ALVVNHWDRRRLCQGGLLLLAGGSALSALHGTYWLLCASRALAGFGGGVAQTVVYATSAQ 133 AL++ +RRR GLL L G+ LS + LCASR L G GGV VVYAT+A Sbjct: 67 ALLMPKVNRRRFALAGLLALVIGNLLSTQASSGLALCASRVLCGLSGGVVMAVVYATAAL 126 Query: 134 RSNKDRTYAATNIILLLWGAVSIGAAPLLISAAGVGAVFLSFPLMALPALAMTRLIPSQP 193 R +KD T+A NI LLWG + + + PL++ AAG+ AVF++ + + AL IP + Sbjct: 127 RESKDSTFAVINIGNLLWGILIVSSTPLILQAAGIPAVFMALAVASAIALLGFNRIPPRY 186 Query: 194 GEARSIQPMVAPPLNLRTTLLLLLFGLLFAGHGVLWVYQERIGVSIGLPGPVIGAILGLS 253 EA + PP+ + LL+ LF LLF GH LWVYQERIG SIGL IGAILG S Sbjct: 187 DEAAAHVEAGEPPMTVTALLLVSLFALLFFGHSALWVYQERIGKSIGLEPQQIGAILGAS 246 Query: 254 TLAGAAGAAIAGMLGRRLGHMSAQVIGFAGSIAASLTIVHGQTQLVYATSAALIMAVWFF 313 LAGA GA +AG++ RR+G + Q+IGF ++ A+L +VHG + L +AT+AALI WFF Sbjct: 247 ILAGAIGAGLAGIIKRRIGLLMPQLIGFGLALVATLIMVHGTSALAFATTAALIHLAWFF 306 Query: 314 GLTYLFALSAEFDPTGRLTSLANAAVFVGQGVGPVMAAMIVSGNNFRMVGWLAASIYAIS 373 L YLF+++AE DP+GRL L NAA+F+GQG GP+ AA++V G N R VGWLAA+ Y + Sbjct: 307 SLPYLFSMTAELDPSGRLAGLGNAAIFIGQGAGPLGAALVVGGGNLRAVGWLAAATYILG 366 Query: 374 LIIALYVTADMALSAR 389 L IA V A +R Sbjct: 367 LFIAFLVVARFRQRSR 382 >ref|ZP_07774643.1| major facilitator family transporter [Pseudomonas fluorescens WH6] gb|EFQ64194.1| major facilitator family transporter [Pseudomonas fluorescens WH6] Length = 393 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 173/373 (46%), Positives = 236/373 (63%) Query: 10 ASHNVDSGKTLGLLGFLMMIGVGTLQMQPVLGGALVDHWGLNLQQMGMLFGAELIAMAIG 69 A ++DS K+LG + +M+I +GTLQ+QP+LGGAL+D GL L +G +F AEL+AMAI Sbjct: 3 ALDSIDSKKSLGAICLMMVISLGTLQIQPILGGALIDQLGLPLNAIGAIFAAELMAMAIA 62 Query: 70 CGTSALVVNHWDRRRLCQGGLLLLAGGSALSALHGTYWLLCASRALAGFGGGVAQTVVYA 129 CG AL + DRRR LL+LA G+ +S + L SR + G GG VVYA Sbjct: 63 CGVCALFMASVDRRRFALVALLILALGNLVSTQLHSQAGLVISRMICGASGGAVMAVVYA 122 Query: 130 TSAQRSNKDRTYAATNIILLLWGAVSIGAAPLLISAAGVGAVFLSFPLMALPALAMTRLI 189 T+A R++KD T+A NI LLWG + + + PL++ GV F + ++ A + Sbjct: 123 TAALRTSKDATFAVINIGNLLWGMLLVTSMPLVLQTFGVNGAFSLLAITSVLAALGCWRV 182 Query: 190 PSQPGEARSIQPMVAPPLNLRTTLLLLLFGLLFAGHGVLWVYQERIGVSIGLPGPVIGAI 249 P + +A P L LL+LLF LLF GH LWVYQERIG SIGL IG I Sbjct: 183 PKRYPDAHRAANGSIQPFGLTAMLLILLFALLFFGHSALWVYQERIGKSIGLEPQQIGGI 242 Query: 250 LGLSTLAGAAGAAIAGMLGRRLGHMSAQVIGFAGSIAASLTIVHGQTQLVYATSAALIMA 309 LG S LAGA GA +AG++GRRLG + Q++ F ++ A+L +V+G + + + T+A LI Sbjct: 243 LGGSILAGALGAGLAGLIGRRLGLLFPQLLSFGTALLATLIMVYGTSPVAFITTACLIHM 302 Query: 310 VWFFGLTYLFALSAEFDPTGRLTSLANAAVFVGQGVGPVMAAMIVSGNNFRMVGWLAASI 369 VWFF L YL +++AE DP+GRL L NAA+FVGQG+GP AA++V +FR VGWLAAS Sbjct: 303 VWFFSLPYLLSMAAELDPSGRLAGLGNAAIFVGQGLGPFGAALVVGEGHFRAVGWLAASA 362 Query: 370 YAISLIIALYVTA 382 Y ++L+I+ V A Sbjct: 363 YLLALVISCLVVA 375 >ref|YP_004354991.1| hypothetical protein PSEBR_a3641 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69987.1| Conserved hypothetical protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 393 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 173/373 (46%), Positives = 235/373 (63%) Query: 10 ASHNVDSGKTLGLLGFLMMIGVGTLQMQPVLGGALVDHWGLNLQQMGMLFGAELIAMAIG 69 A ++DS K+LG + +M+I +GTLQ+QP+LGGAL+D GL L +G LF AEL+AMAI Sbjct: 3 ALDSIDSKKSLGAICLMMVISLGTLQIQPILGGALIDQLGLPLNAIGALFAAELMAMAIA 62 Query: 70 CGTSALVVNHWDRRRLCQGGLLLLAGGSALSALHGTYWLLCASRALAGFGGGVAQTVVYA 129 CG AL + DRRR LL+LA G+ S + L SR + G GG VVYA Sbjct: 63 CGVCALFMASVDRRRFALVALLILALGNLASTQLHSQAGLVISRMICGASGGAVMAVVYA 122 Query: 130 TSAQRSNKDRTYAATNIILLLWGAVSIGAAPLLISAAGVGAVFLSFPLMALPALAMTRLI 189 T+A R++KD T+A NI LLWG + + + PL++ A GV F + ++ A + Sbjct: 123 TAALRTSKDATFAIINIGNLLWGMLLVTSMPLVLQAFGVNGAFSLLAITSVLAALGCWRV 182 Query: 190 PSQPGEARSIQPMVAPPLNLRTTLLLLLFGLLFAGHGVLWVYQERIGVSIGLPGPVIGAI 249 P + +A P L LL+LLF LLF GH LWVYQERIG SIGL IG I Sbjct: 183 PKRYPDAHRAANGSIQPFGLTAVLLILLFALLFFGHSALWVYQERIGKSIGLEPQQIGGI 242 Query: 250 LGLSTLAGAAGAAIAGMLGRRLGHMSAQVIGFAGSIAASLTIVHGQTQLVYATSAALIMA 309 LG S LAGA GA +AG++GRRLG + Q++ F ++ A+L +V+G + + + T+A LI Sbjct: 243 LGGSILAGALGAGLAGLIGRRLGLLFPQLLSFGTALLATLIMVYGTSPVAFITTACLIHM 302 Query: 310 VWFFGLTYLFALSAEFDPTGRLTSLANAAVFVGQGVGPVMAAMIVSGNNFRMVGWLAASI 369 VWFF L YL +++AE DP+GRL L NAA+F+GQG+GP AA++V + R VGWLAAS Sbjct: 303 VWFFSLPYLLSMAAELDPSGRLAGLGNAAIFIGQGLGPFGAALVVGEGHLRAVGWLAASA 362 Query: 370 YAISLIIALYVTA 382 Y ++L+I+ V A Sbjct: 363 YLLALVISCLVVA 375 >ref|YP_260465.1| major facilitator family transporter [Pseudomonas fluorescens Pf-5] gb|AAY92629.1| transporter, major facilitator family [Pseudomonas fluorescens Pf-5] Length = 387 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 105/352 (29%), Positives = 164/352 (46%), Gaps = 3/352 (0%) Query: 29 IGVGTLQMQPVLGGALVDHWGLNLQQMGMLFGAELIAMAIGCGTSALVVNHWDRRRLCQG 88 I L P + L W L+ Q+G LF AEL AM++ + + H D RR Sbjct: 31 ITPAVLLTAPAIAAQLASQWQLSPSQIGDLFSAELGAMSLATLPAIWWLKHIDWRRAALC 90 Query: 89 GLLLLAGGSALSALHGTYWLLCASRALAGFGGGVAQTVVYATSAQRSNKDRTYAATNIIL 148 LL + LS L Y LL +R+ + GG + A++A N R Y + Sbjct: 91 SALLFILANLLSMLANDYSLLLIARSCSALAGGSLMIICLASAAASPNPSRAYGFWVMGQ 150 Query: 149 LLWGAVSIGAAPLLISAAGVGAVFLSFPLMALPALAMTRLIPSQPGEARSIQPMVAPPLN 208 L+ GA+ + P+L G+GA +L L+ L L + R P+ +A S + P Sbjct: 151 LVLGAIGLSLLPMLFERFGLGACYLIMALLMLLCLPLARSFPAGAAKAASHEAKAPPVSR 210 Query: 209 LRTTLLLLLFGLLFAGHGVLWVYQERIGVSIGLPGPVIGAILGLSTLAGAAGAAIAGMLG 268 + TL +L + +W + IG GL G +L ++TL G AGA A + G Sbjct: 211 AKATLGILGILTFYISLSGVWTFIGAIGGQSGLSAQTSGDVLAIATLMGIAGALCATLFG 270 Query: 269 RRLGHMSAQVIGFAGSIAASLTIVHGQTQLVYATSAALIMA-VWFFGLTYLFALSAEFDP 327 RL + ++G+ G +A S+ ++ GQ QL AAL+ W F L + A AE D Sbjct: 271 DRLPRSALLLLGY-GLMAGSVLLLLGQPQLARFALAALVFKFTWTFILPLILARMAEMDR 329 Query: 328 TGRLTSLANAAVFVGQGVGPVMAAMIVSGN-NFRMVGWLAASIYAISLIIAL 378 +GRL + +N + G +GP +A ++ G+ FR + A+I +S+ + L Sbjct: 330 SGRLMNASNLVISAGLAIGPTIAGRLIEGSGGFRGLLLAGAAITLLSMALVL 381