BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1996.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004230826.1| hypothetical protein BC1001_4366 [Burkholder... 351 1e-94 ref|YP_004474119.1| hypothetical protein Psefu_2054 [Pseudomonas... 324 1e-86 ref|YP_980848.1| hypothetical protein Pnap_0608 [Polaromonas nap... 321 1e-85 gb|EGH55405.1| hypothetical protein PSYCIT7_28122 [Pseudomonas s... 308 6e-82 ref|YP_004354990.1| hypothetical protein PSEBR_a3640 [Pseudomona... 301 7e-80 >ref|YP_004230826.1| hypothetical protein BC1001_4366 [Burkholderia sp. CCGE1001] gb|ADX57766.1| hypothetical protein BC1001_4366 [Burkholderia sp. CCGE1001] Length = 336 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 173/308 (56%), Positives = 229/308 (74%), Gaps = 6/308 (1%) Query: 37 GIAPTVSQPQGLNLGETSFMDGFSRTDPGWAYLPALRYANGNAIKDGSGRDSAAFKDPRI 96 G APTVS+PQGLNLG TSF DGFS PGW+YL +RY+ ++IK+ G ++AF+ PR+ Sbjct: 34 GRAPTVSEPQGLNLGSTSFFDGFS-GPPGWSYLGEVRYSTADSIKNADGSTNSAFRHPRV 92 Query: 97 DSVTLINHLSYTSPIRIGNATLGLNALLPVVSLDGRFGQPGATLTGGGTSIGDMTISPSL 156 DS T INHL+Y SP + TLG N ++P+ L G F QPGA+L+GGGT++GD+T P L Sbjct: 93 DSFTWINHLAYASPWHLAGGTLGFNVIVPLTWLHGSFDQPGASLSGGGTALGDVTFGPQL 152 Query: 157 QFDPVMGAAG-PLYSQRLEFSFLLPTGHYNRNNDLNQGAGYYSINPFWAATLLPTPRWEI 215 Q+ P++GA+G P++ QR EF + PTG Y N DLNQ +GY+S+NP+WAA+L P P+ EI Sbjct: 153 QYAPIVGASGQPVFVQRFEFDVIAPTGQYKHNADLNQSSGYFSLNPYWAASLFPFPKIEI 212 Query: 216 SWRLHYLYNFKNTQPAGSAPLAYQGQSVRDTQAGQAAWINLSTSYEVMRDVRLGINSYYF 275 SWRLHYLYNF+N +PA S PLA++GQ V DTQAGQAAWIN +TSY + + LG+N Y+F Sbjct: 213 SWRLHYLYNFRNHEPAASYPLAFEGQPVSDTQAGQAAWINFTTSYALTPSLHLGVNGYFF 272 Query: 276 KQLTDSKTNGTDMADSREQVLGVGLGAMFTIHRGDKRDALWINSYTESHVRNRTRNSLVV 335 +QL D++ NGT +A REQVLG+G G + + R ALW+N+YTE+ VRNRTRNSL++ Sbjct: 273 RQLADNRINGTSVA-GREQVLGIGPGLFWQMTR---TRALWLNAYTETAVRNRTRNSLIL 328 Query: 336 QARYAYEF 343 QA+ A F Sbjct: 329 QAQIATSF 336 >ref|YP_004474119.1| hypothetical protein Psefu_2054 [Pseudomonas fulva 12-X] gb|AEF22025.1| hypothetical protein Psefu_2054 [Pseudomonas fulva 12-X] Length = 330 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 163/331 (49%), Positives = 228/331 (68%), Gaps = 7/331 (2%) Query: 15 IPITLFGASLALGADHALAQVSGIAPTVSQPQGLNLGETSFMDGFSRTDPGWAYLPALRY 74 + ITL +LA D A+A P+V+QP G+NLG TSF DGF+ PG YL L+Y Sbjct: 5 LAITLGLFTLA-ALDTAMAADGPPPPSVNQPAGINLGGTSFYDGFA-GPPGLNYLAYLKY 62 Query: 75 ANGNAIKDGSGRDSAAFKDPRIDSVTLINHLSYTSPIRIGN-ATLGLNALLPVVSLDGRF 133 + ++ ++ +G+++ AF +P+++ VTLIN SY SP IG A LG + L+P+VSLDG F Sbjct: 63 QSASSFRNNNGKENTAFDNPKLNVVTLINQFSYYSPETIGGGAHLGWSLLVPLVSLDGDF 122 Query: 134 GQPGATLTGGGTSIGDMTISPSLQFDPVMGAAG-PLYSQRLEFSFLLPTGHYNRNNDLNQ 192 G GA L +GD+T P +QFDP++ + G P++ QR+ F ++PTG Y+ + DLNQ Sbjct: 123 GDAGAKLKDNAFGLGDITAGPQIQFDPIVDSTGRPVFVQRVAFDVIMPTGKYDEDKDLNQ 182 Query: 193 GAGYYSINPFWAATLLPTPRWEISWRLHYLYNFKNTQPAGSAPLAYQGQSVRDTQAGQAA 252 G+ YS+NP+WAAT +P PRWE+SWRLHYLYNFKN PA S+P+ ++GQ VRDTQAG++A Sbjct: 183 GSNTYSLNPYWAATWMPAPRWELSWRLHYLYNFKNDDPASSSPVPFEGQPVRDTQAGKSA 242 Query: 253 WINLSTSYEVMRDVRLGINSYYFKQLTDSKTNGTDMADSREQVLGVGLGAMFTIHRGDKR 312 WIN + SYEV+ ++ +GIN YYFKQL+D + NG + DSRE+VLG+G G + I G Sbjct: 243 WINFAASYEVIPNLSVGINGYYFKQLSDDQVNGQRLEDSREKVLGIGPGLFWKISEG--- 299 Query: 313 DALWINSYTESHVRNRTRNSLVVQARYAYEF 343 D W+N+Y E+ V NR +N VQ R+A+ F Sbjct: 300 DGFWLNTYHETQVENRAKNDFAVQLRFAHAF 330 >ref|YP_980848.1| hypothetical protein Pnap_0608 [Polaromonas naphthalenivorans CJ2] gb|ABM35927.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 330 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 176/336 (52%), Positives = 224/336 (66%), Gaps = 14/336 (4%) Query: 13 HLIPITLF----GASLALGADHALAQVSGIAPTVSQPQGLNLGETSFMDGFSRTDPGWAY 68 HL P +L A + L A HA+ Q +P VSQP GLNLG TSF DGFS PGW + Sbjct: 4 HLAPRSLARLAGTAFVTLLAGHAMGQ----SPAVSQPGGLNLGNTSFYDGFS-GPPGWTW 58 Query: 69 LPALRYANGNAIKDGSGRDSAAFKDPRIDSVTLINHLSYTSPIRIGNATLGLNALLPVVS 128 L + +++ N I D +G S F DP+I+S +N ++Y P IG L A+LPVV+ Sbjct: 59 LSTVLHSSANKIVDSNGNASPVFTDPKINSTVFVNQITYAMPASIGGWRPALMAILPVVA 118 Query: 129 LDGRFGQPGATLTGGGTSIGDMTISPSLQFDPVMGAAG-PLYSQRLEFSFLLPTGHYNRN 187 LD FG PG +L GGT GD+T+ SLQ +PVM A G P++ QRL + +LPTG Y++N Sbjct: 119 LDTSFG-PGPSLKDGGTGAGDITLEASLQAEPVMNAGGAPVFVQRLAAAAILPTGRYDQN 177 Query: 188 NDLNQGAGYYSINPFWAATLLPTPRWEISWRLHYLYNFKNTQPAGSAPLAYQGQSVRDTQ 247 D+NQG+GY S NP+WAA+ P PRWE SWRLHYLYNFKN +PA SAP + GQ V TQ Sbjct: 178 VDINQGSGYASFNPYWAASFFPAPRWETSWRLHYLYNFKNNKPASSAPRPFNGQPVSTTQ 237 Query: 248 AGQAAWINLSTSYEVMRDVRLGINSYYFKQLTDSKTNGTDMADSREQVLGVGLGAMFTIH 307 AG AAW+N +TSY V DV +GIN Y+F+QL+DS+ NGT +ADSRE+VLG+G G M+ I Sbjct: 238 AGDAAWVNFATSYSVTPDVSVGINGYFFQQLSDSRANGTRLADSRERVLGIGPGMMWRI- 296 Query: 308 RGDKRDALWINSYTESHVRNRTRNSLVVQARYAYEF 343 + ALWIN+YTES VRNR + L +QAR F Sbjct: 297 --SPKKALWINAYTESMVRNRAASPLSLQARMVINF 330 >gb|EGH55405.1| hypothetical protein PSYCIT7_28122 [Pseudomonas syringae Cit 7] Length = 352 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 150/299 (50%), Positives = 212/299 (70%), Gaps = 6/299 (2%) Query: 47 GLNLGETSFMDGFSRTDPGWAYLPALRYANGNAIKDGSGRDSAAFKDPRIDSVTLINHLS 106 G+NLG TSF DGF+ PG + L+++ ++I+ G+D++AF DP+I+ VT+IN LS Sbjct: 36 GINLGGTSFYDGFA-GPPGLTHQTYLKFSTASSIRTNGGKDNSAFDDPKINVVTMINQLS 94 Query: 107 YTSPIRIGN-ATLGLNALLPVVSLDGRFGQPGATLTGGGTSIGDMTISPSLQFDPVMGAA 165 Y SP IG A LG + L+PVVSLDG FG GATL G +GD+T+ P +QFDP++ A Sbjct: 95 YYSPESIGGGAHLGWSLLVPVVSLDGDFGDNGATLKDNGAGLGDVTVGPQVQFDPIINAQ 154 Query: 166 G-PLYSQRLEFSFLLPTGHYNRNNDLNQGAGYYSINPFWAATLLPTPRWEISWRLHYLYN 224 G P++ QR+ F ++PTG Y+R+ DLN G+ ++S+NP+WAAT +P PRWE+SWRL+YLYN Sbjct: 155 GRPVFVQRVAFDTIVPTGKYDRHKDLNPGSNHFSLNPYWAATWMPAPRWEMSWRLNYLYN 214 Query: 225 FKNTQPAGSAPLAYQGQSVRDTQAGQAAWINLSTSYEVMRDVRLGINSYYFKQLTDSKTN 284 FKN PA S+ + GQSVR+TQ+GQ+AW N + SYEV V +GIN YYF+Q++D + N Sbjct: 215 FKNDDPASSSQQFFDGQSVRNTQSGQSAWANFTASYEVFPKVSVGINGYYFRQISDDQVN 274 Query: 285 GTDMADSREQVLGVGLGAMFTIHRGDKRDALWINSYTESHVRNRTRNSLVVQARYAYEF 343 G+ ++DSRE+VLG+G G + I + A W+N+Y E+ V NR+R +VQ RY + F Sbjct: 275 GSRLSDSREKVLGIGPGLFWKI---SEPQAFWLNTYKETGVENRSRADYMVQVRYVHTF 330 >ref|YP_004354990.1| hypothetical protein PSEBR_a3640 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69986.1| Conserved hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 330 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 149/299 (49%), Positives = 208/299 (69%), Gaps = 6/299 (2%) Query: 47 GLNLGETSFMDGFSRTDPGWAYLPALRYANGNAIKDGSGRDSAAFKDPRIDSVTLINHLS 106 G+NLG TSF DGF+ PG + L+++ ++I+ G+ + AF DP+I+ +T+IN LS Sbjct: 36 GINLGGTSFYDGFA-GPPGLTHQTYLKFSTASSIRTNGGKKNGAFDDPKINVITMINQLS 94 Query: 107 YTSPIRI-GNATLGLNALLPVVSLDGRFGQPGATLTGGGTSIGDMTISPSLQFDPVMGAA 165 Y SP G A LG + L+PVVSLDG FG GA L T +GD+T+ P +QFDP++ A+ Sbjct: 95 YYSPDTFAGGAHLGWSLLVPVVSLDGDFGDNGAKLKDNATGLGDVTVGPQVQFDPIVDAS 154 Query: 166 G-PLYSQRLEFSFLLPTGHYNRNNDLNQGAGYYSINPFWAATLLPTPRWEISWRLHYLYN 224 G P++ QR+ F +LPTG Y+++ DLN G+ ++S+NP+WAAT +P PRWE+SWRL+YLYN Sbjct: 155 GRPVFVQRMAFDTILPTGKYDKDKDLNPGSNHFSLNPYWAATWMPAPRWEVSWRLNYLYN 214 Query: 225 FKNTQPAGSAPLAYQGQSVRDTQAGQAAWINLSTSYEVMRDVRLGINSYYFKQLTDSKTN 284 FKN PA S+ ++GQ+VRDTQ+GQ+AW N + SYEV V +GIN YYF+Q++D K N Sbjct: 215 FKNDDPASSSQQFFEGQAVRDTQSGQSAWANFTASYEVFPKVSVGINGYYFRQISDDKVN 274 Query: 285 GTDMADSREQVLGVGLGAMFTIHRGDKRDALWINSYTESHVRNRTRNSLVVQARYAYEF 343 G + DSRE+VLG G G + I DK A W+N+Y E+ V NR+R VQ RY ++F Sbjct: 275 GNTLTDSREKVLGFGPGLFWKITE-DK--AFWLNTYKETGVENRSRADYQVQVRYVHKF 330