BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1994.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002873663.1| AraC family regulatory protein [Pseudomonas ... 161 1e-37 ref|YP_004354998.1| AraC family transcriptional regulator [Pseud... 160 2e-37 ref|ZP_07774636.1| transcriptional regulator, AraC family [Pseud... 159 5e-37 ref|YP_004474108.1| AraC family transcriptional regulator [Pseud... 140 2e-31 ref|ZP_03588608.1| transcriptional activator FeaR [Burkholderia ... 123 4e-26 >ref|YP_002873663.1| AraC family regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY50581.1| AraC family regulatory protein [Pseudomonas fluorescens SBW25] Length = 332 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 161/322 (50%), Gaps = 39/322 (12%) Query: 33 MAKLAVVVTDDIAQVDRSQVWKTWLSTYVARDPEDLAT-SGISFSPGDWLGFRGCIEYGD 91 M LA V T+ + + DR WK ++S ++ R PE + P F+G +EYGD Sbjct: 1 MNNLACVSTEQVVRSDRLMKWKEFMSDHLGRTPEYIKRLEATHIDPLHNGNFQGRLEYGD 60 Query: 92 LGEASLCRVRSDACRYVRQPAGTPDVPGTA-MIVLQTRGTSVFRQGQRQAAXA------- 143 LG+ CR+ + A RY R + DV T M++LQ G S F QGQ+ + A Sbjct: 61 LGQLRFCRMTASAHRYSRHLSKALDVVDTPRMLILQVAGVSHFEQGQQSSTVAPDDMLLV 120 Query: 144 -----------------------ALGHLAARS----FGRTGIERMVREQISSAFRECHTM 176 A G L GR G+ RM+ IS A+ + + Sbjct: 121 DCGKPFSVTSTQGCEHFILLFQGAAGQLTQTGDMHLSGRNGLGRMLMHLISDAYHQYPLL 180 Query: 177 PLRSGNVVANTILQLVGSALEASNDNPA---GAAMGLRQRIVQFIDEHLSDEHLTVARIA 233 +S ++ ++I L+ +AL+ D + R+ +I+ HL+D L++ RIA Sbjct: 181 NSQSAGLIGDSIAGLLNNALKNKQDEKQLDHDFRFFKQNRLKAYIERHLADRDLSIERIA 240 Query: 234 EAFGYSSRQIHRMFSDETGMTVAQYLWQRRLAQSLKDLQDSEQAGCTITEIAFRWGFSNA 293 A S R +HR F DE G +V++Y+WQRRL++ +DL++ EQ ++TEIA+ WG+ ++ Sbjct: 241 NAEQCSVRSLHRAFQDELGCSVSEYIWQRRLSRCAEDLRNREQTHRSLTEIAYAWGYGSS 300 Query: 294 AHFSHAFRQAYGLSPRECRVAA 315 +HFS F+ +G+SPR R A Sbjct: 301 SHFSRHFKSTFGMSPRLFRETA 322 >ref|YP_004354998.1| AraC family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69994.1| putative Transcription factor, AraC family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 332 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 162/322 (50%), Gaps = 39/322 (12%) Query: 33 MAKLAVVVTDDIAQVDRSQVWKTWLSTYVARDPEDLATSGISF-SPGDWLGFRGCIEYGD 91 M LA V TD + + DR WK ++S ++ R P+ + +F P F+G +EYGD Sbjct: 1 MNHLACVSTDQVVRSDRLMKWKEFMSDHLGRTPDYIKRLESTFIDPLHESNFQGRLEYGD 60 Query: 92 LGEASLCRVRSDACRYVRQPAGTPDVPGTA-MIVLQTRGTSVFRQGQRQAAXA------- 143 LG+ CR+ + A RY R + D T M+++Q G S F QGQ+ + A Sbjct: 61 LGQLRFCRMTASAHRYSRHLSKAVDALDTPRMLIMQVAGVSHFEQGQQSSVLAPDEMLLV 120 Query: 144 -----------------------ALGHLAARS----FGRTGIERMVREQISSAFRECHTM 176 A G LA GR G+ RM+ IS A+ + + Sbjct: 121 DCGKPFNVTSTQGCEHFILLFQGASGQLAQTGDMHLNGRNGLGRMLMHLISDAYNQYPLL 180 Query: 177 PLRSGNVVANTILQLVGSALEASNDNPA---GAAMGLRQRIVQFIDEHLSDEHLTVARIA 233 S ++ ++I L+ +AL+ + + R+ +I+ HL+D LT+ RIA Sbjct: 181 NNHSAGLIGDSITGLLDNALKNKQEEKQLEHDFRFFKQNRLKAYIERHLADRDLTIERIA 240 Query: 234 EAFGYSSRQIHRMFSDETGMTVAQYLWQRRLAQSLKDLQDSEQAGCTITEIAFRWGFSNA 293 A S R +HR F DE G +V++Y+WQRRL++ +DL++ E A ++TEIA+ WG+ ++ Sbjct: 241 NAEQCSVRSLHRAFQDELGCSVSEYIWQRRLSRCAEDLRNREHAHRSLTEIAYAWGYGSS 300 Query: 294 AHFSHAFRQAYGLSPRECRVAA 315 +HFS F+ +G+SPR R A Sbjct: 301 SHFSRHFKSTFGMSPRLFRDTA 322 >ref|ZP_07774636.1| transcriptional regulator, AraC family [Pseudomonas fluorescens WH6] gb|EFQ64187.1| transcriptional regulator, AraC family [Pseudomonas fluorescens WH6] Length = 332 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 160/322 (49%), Gaps = 39/322 (12%) Query: 33 MAKLAVVVTDDIAQVDRSQVWKTWLSTYVARDPEDLATSGISF-SPGDWLGFRGCIEYGD 91 M LA V TD + + DR WK ++S ++ R P+ + +F P F+G +EYGD Sbjct: 1 MNHLACVSTDQVVRSDRLMKWKEFMSDHLGRTPDYIKRLESTFIDPLHDSNFQGRLEYGD 60 Query: 92 LGEASLCRVRSDACRYVRQPAGTPDVPGTA-MIVLQTRGTSVFRQGQR------------ 138 LG+ CR+ + A RY R + D T M+++Q G S F QGQ+ Sbjct: 61 LGQLRFCRMTASAHRYSRHLSKAIDALDTPRMLIMQVAGVSHFEQGQQSSVLAPDEMLLV 120 Query: 139 ---------------------QAAXAALGHLAARSF-GRTGIERMVREQISSAFRECHTM 176 Q A L A GR G+ RM+ IS A+ + + Sbjct: 121 DCGKPFNVTSMQGCEHFILLFQGASVQLAQTADMHLNGRNGLGRMLMHLISDAYNQYPLL 180 Query: 177 PLRSGNVVANTILQLVGSALEASNDNPA---GAAMGLRQRIVQFIDEHLSDEHLTVARIA 233 S ++ ++I L+ +AL+ + + R+ +I+ HL+D LT+ RIA Sbjct: 181 NNHSAGLIGDSITGLLDNALKNKQEEKQLEHDFRFFKQNRLKAYIERHLADRDLTIERIA 240 Query: 234 EAFGYSSRQIHRMFSDETGMTVAQYLWQRRLAQSLKDLQDSEQAGCTITEIAFRWGFSNA 293 A S R +HR F DE G +V++Y+WQRRL++ +DL++ E A ++TEIA+ WG+ ++ Sbjct: 241 NAEQCSVRSLHRAFQDELGCSVSEYIWQRRLSRCAEDLRNREHAHRSLTEIAYAWGYGSS 300 Query: 294 AHFSHAFRQAYGLSPRECRVAA 315 +HFS F+ +G+SPR R A Sbjct: 301 SHFSRHFKSTFGMSPRLFRDTA 322 >ref|YP_004474108.1| AraC family transcriptional regulator [Pseudomonas fulva 12-X] gb|AEF22014.1| transcriptional regulator, AraC family [Pseudomonas fulva 12-X] Length = 328 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 101/327 (30%), Positives = 151/327 (46%), Gaps = 49/327 (14%) Query: 33 MAKLAVVVTDDIAQVDRSQVWKTWLSTYVARDPEDLATSGIS-FSPGDWLGFRGCIEYGD 91 M+ LA V TD AQ DR W+ ++S ++ + PE + S F F G +EYG Sbjct: 1 MSTLASVSTDPYAQSDRLLKWREFMSNHLGQTPEHVRRLETSYFEALHDQPFTGRLEYGA 60 Query: 92 LGEASLCRVRSDACRYVRQ------PAGTPDVPGTAMIVLQTRGTSVFRQGQRQAAXAA- 144 LGE C + R+ R PA TP +++LQ S F QG ++ Sbjct: 61 LGELHFCHMVCSPHRFTRSLSKTLAPAETP-----WLVILQMSEISHFEQGNKRHVLTPG 115 Query: 145 ------------------------LGHLAARSFG---------RTGIERMVREQISSAFR 171 L H G R G+ RM++ IS + Sbjct: 116 EILLLDCGQPFNVTSMKGCEYLMLLCHGLGSRVGTVPEPHLNSRNGLVRMLQHMISDTYH 175 Query: 172 ECHTMPLRSGNVVANTILQLVGSALEASNDNP---AGAAMGLRQRIVQFIDEHLSDEHLT 228 + M + +++ +I L+ + LE + RI FI+++L+D LT Sbjct: 176 QFPLMNATTASLLGQSITSLLQNTLENQRQQTHLERDFHFFKKSRIRSFIEQNLTDRELT 235 Query: 229 VARIAEAFGYSSRQIHRMFSDETGMTVAQYLWQRRLAQSLKDLQDSEQAGCTITEIAFRW 288 + RIAEA S R +HR F DET + +Y+WQRRLA+ ++L+ E +IT+IA+ W Sbjct: 236 IERIAEALECSVRTLHRAFKDETTSGLNEYIWQRRLARCAEELRKPENLPRSITDIAYAW 295 Query: 289 GFSNAAHFSHAFRQAYGLSPRECRVAA 315 GFS+++HFS AFR YG+ PR R +A Sbjct: 296 GFSSSSHFSKAFRAMYGMPPRLFRESA 322 >ref|ZP_03588608.1| transcriptional activator FeaR [Burkholderia multivorans CGD1] gb|EED96959.1| transcriptional activator FeaR [Burkholderia multivorans CGD1] Length = 330 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 126/301 (41%), Gaps = 40/301 (13%) Query: 51 QVWKTWLSTYVARDPEDLATSGISFSPGDWLGFRGCIEYGDLGEASLCRVRSDACRYVRQ 110 + W +S VA P + F P F G I G +G A RV + Y Q Sbjct: 17 RAWPDLISDLVAGSPPERNRQSCEFEPIGTTPFSGSITCGAVGAARFARVAATPSVYRGQ 76 Query: 111 PAGTPDVPGTAMIVLQTRGTSVFRQGQRQ------------------------------- 139 P D+ + LQT G S+ G RQ Sbjct: 77 PRLGSDI-APLFVALQTHGDSLLGDGVRQIRLLPGEWTVFDARCPFTISSQHCMELIFVN 135 Query: 140 -----AAXAALGHLAARSF---GRTGIERMVREQISSAFRECHTMPLRSGNVVANTILQL 191 A L +F G +G RM + + S FRE + + + L Sbjct: 136 VPGLIPAQPPRQPLIYPTFEPSGTSGSARMFSDLVVSLFRELENVDSNIAISSVDLLRNL 195 Query: 192 VGSALEASNDNPAGAAMGLRQRIVQFIDEHLSDEHLTVARIAEAFGYSSRQIHRMFSDET 251 A PA R+ ++QFI+EHLSD L+ IA A G S RQ+HR+F Sbjct: 196 FSDAFRIQCPWPAQPLETQRRAVLQFIEEHLSDPELSPPSIASALGMSIRQVHRLFKRAG 255 Query: 252 GMTVAQYLWQRRLAQSLKDLQDSEQAGCTITEIAFRWGFSNAAHFSHAFRQAYGLSPREC 311 TV +Y+W+RR+ + ++L+ A ++T IAFRWGFS++ HFS AF++ G++P E Sbjct: 256 SQTVGEYIWKRRIQRCSEELRSGANAALSVTTIAFRWGFSSSPHFSRAFKKEMGMTPSEY 315 Query: 312 R 312 R Sbjct: 316 R 316