BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1993.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_299997.1| IclR family transcriptional regulator [Ralstoni... 269 4e-70 ref|YP_001630032.1| transcriptional regulatory protein [Bordetel... 174 2e-41 ref|YP_003592841.1| IclR family transcriptional regulator [Caulo... 167 3e-39 ref|ZP_08867910.1| IclR family transcriptional regulator [Azospi... 166 5e-39 ref|YP_718171.1| IclR family transcriptional regulator [Sphingom... 162 1e-37 >ref|YP_299997.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ65153.1| transcriptional regulator, IclR family [Ralstonia eutropha JMP134] Length = 286 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 143/259 (55%), Positives = 185/259 (71%), Gaps = 1/259 (0%) Query: 66 MATDRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASSGGGYYILG 125 MATDR+L VL LF+L+ P WTV++I L VS S+AYRY+ L E+GLVAS+G Y+LG Sbjct: 23 MATDRALGVLTLFSLDKPMWTVDEIGEQLGVSSSSAYRYLSNLLELGLVASAGAKRYVLG 82 Query: 126 PAILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQS 185 PAI+QLDRQIQLTDP+L +ARPVM L +AP GSV+LLCRAF D+VLC+HQV +GPQ Sbjct: 83 PAIIQLDRQIQLTDPMLQAARPVMAELVDFAPSGSVMLLCRAFGDSVLCVHQVLGKGPQP 142 Query: 186 LISYERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQL 245 ++SYERGRPM + RGATSRIILA + TR L+ +YE+H E+ ++G+ D W FR S+L Sbjct: 143 IVSYERGRPMLMFRGATSRIILAFQQTRMLQAIYEKHHVEIAAAGLGDDWSTFRLGLSRL 202 Query: 246 RKTGYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFVLP-GSAGQEHIPILASVLATGSR 304 R+ GYAVS GEIDP R+GIA +LGE + GSLS+V+ S Q I L+ +L + Sbjct: 203 RRMGYAVSHGEIDPGRVGIAAPILGEDGRAAGSLSYVVAEASVDQGSIARLSHILMGAAH 262 Query: 305 DIAAGMQGSGEDEARRASA 323 +I+ M G+D A A Sbjct: 263 EISISMLAQGKDGTSAADA 281 >ref|YP_001630032.1| transcriptional regulatory protein [Bordetella petrii DSM 12804] emb|CAP41762.1| transcriptional regulatory protein [Bordetella petrii] Length = 259 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 141/246 (57%), Gaps = 1/246 (0%) Query: 67 ATDRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASSGGGYYILGP 126 ATD+ S+ LFT E P WTV++ A L +STAYR+ +L + GL+ + G Y+LGP Sbjct: 3 ATDKLFSIFSLFTYERPEWTVDEAAEQLGYPVSTAYRFFKSLSDEGLIVAYAAGRYVLGP 62 Query: 127 AILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQSL 186 AI+QLDRQI+L DPL+ + +M RLA +P LLCR + + V+C+HQ Sbjct: 63 AIIQLDRQIRLQDPLIKAGSSIMKRLAAESPFDGTFLLCRLYRNQVICVHQESKGFSDLT 122 Query: 187 ISYERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQLR 246 +SYERGR MPL RGA S+IILAH P R ++ + +++ + G+ WE + ++R Sbjct: 123 VSYERGRLMPLHRGAASKIILAHLPVRPIRAYQTANAKDVEAVGLGVDWETMKQSLRRIR 182 Query: 247 KTGYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFV-LPGSAGQEHIPILASVLATGSRD 305 K G ++ E+D IGIA L +GSL V L ++ +P ++ L + + Sbjct: 183 KAGICITRAELDNGAIGIAAPLFLIDGSIVGSLGLVLLEEDTNKQLLPAISEELMAAAAE 242 Query: 306 IAAGMQ 311 I A ++ Sbjct: 243 ITARLR 248 >ref|YP_003592841.1| IclR family transcriptional regulator [Caulobacter segnis ATCC 21756] gb|ADG10223.1| transcriptional regulator, IclR family [Caulobacter segnis ATCC 21756] Length = 269 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 94/215 (43%), Positives = 131/215 (60%) Query: 69 DRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASSGGGYYILGPAI 128 DR LSVL+LFT+ P WTVE AR LEV STAYRY +L + GL+ + G Y++GPAI Sbjct: 5 DRVLSVLQLFTMAEPEWTVEDAARRLEVPTSTAYRYFRSLVDAGLIVNFTAGRYVIGPAI 64 Query: 129 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQSLIS 188 ++LDRQ + DPL+L+A+P ++ L V LLCR + TV+C+ Q G IS Sbjct: 65 IELDRQTRHLDPLILAAQPTLSALVEPLETTGVSLLCRIYRRTVICVDQGRPPGRPLEIS 124 Query: 189 YERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQLRKT 248 YERGRPMPL RGA S+ I AH R LKR +E E ++G+ WE F+++ ++RK Sbjct: 125 YERGRPMPLFRGAASKSITAHITARTLKRYFEDDIEAAAAAGLGADWETFKAKMREIRKA 184 Query: 249 GYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFVL 283 V+ GE+D +G++ + +GS+ VL Sbjct: 185 EVCVTCGELDQGLLGVSAPIFAPDGDILGSIGVVL 219 >ref|ZP_08867910.1| IclR family transcriptional regulator [Azospirillum amazonense Y2] gb|EGY02498.1| IclR family transcriptional regulator [Azospirillum amazonense Y2] Length = 252 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 136/232 (58%) Query: 69 DRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASSGGGYYILGPAI 128 DR LSVL LFT+E P WTVE+ AR L +S STAY Y +L E GL+ +S G Y +GPAI Sbjct: 5 DRVLSVLGLFTIEAPEWTVEEAARALGLSNSTAYEYFRSLVEAGLLVASKAGRYSVGPAI 64 Query: 129 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQSLIS 188 ++LDR + DPL +A + L ++ LLCR + V+C+ Q R P IS Sbjct: 65 IELDRVTRRFDPLTNAASGTLRDLVADLEVEAIGLLCRIYRLKVMCVDQYVRRPPTFAIS 124 Query: 189 YERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQLRKT 248 YERGRPMPL RGA S+IILA+ R L+R Y+ + ++G+ DSW+ F+ Q+RK Sbjct: 125 YERGRPMPLGRGAASKIILANLAPRPLRRFYDGDPAAVAAAGLGDSWDAFKRTVRQIRKP 184 Query: 249 GYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFVLPGSAGQEHIPILASVLA 300 G + GE+D +GI+ + G +GS+ V+ + +H L + +A Sbjct: 185 GVLATVGELDAGLMGISAPVFGAGGDVLGSIGLVVSAADFLDHPARLEATMA 236 >ref|YP_718171.1| IclR family transcriptional regulator [Sphingomonas sp. KA1] dbj|BAF03459.1| putative transcriptional regulator, IclR family [Sphingomonas sp. KA1] Length = 253 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 124/215 (57%) Query: 69 DRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASSGGGYYILGPAI 128 D++L + LF++E P WTVE A + STAYRY +L E GL+ G Y++GPA+ Sbjct: 5 DKALGLAGLFSIEEPQWTVEAAASRTGIPTSTAYRYFRSLNEAGLITDFSAGRYVIGPAV 64 Query: 129 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQSLIS 188 + LDR + TDPL+L+A+ M+ L PD SVV+L R F V+C+ Q IS Sbjct: 65 IHLDRVARGTDPLVLAAQDAMDNLINRGPDRSVVILARIFDRRVMCVDQRRKGYHPLTIS 124 Query: 189 YERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQLRKT 248 YERGRPMPL RG+ S+IILAH R + R + + ++ +G+ + FR +R+ Sbjct: 125 YERGRPMPLYRGSVSKIILAHLSPRLIVRCFHDDRIDIEEAGLGSDLKSFRRNLRLIRRA 184 Query: 249 GYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFVL 283 GY+V+ GE+D IGIA +L LS V+ Sbjct: 185 GYSVTHGEVDKGVIGIAAPILSPNGDVFACLSLVV 219