BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1989.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_933923.1| putative LysR-type transcriptional regulator Na...   151   5e-35
ref|YP_157769.1| LysR family transcriptional regulator [Aromatol...   148   5e-34
ref|YP_004847278.1| LysR family transcriptional regulator [Pseud...   137   1e-30
ref|ZP_03698663.1| transcriptional regulator, LysR family [Lutie...   136   1e-30
ref|YP_002942281.1| LysR family transcriptional regulator [Vario...   122   3e-26

>ref|YP_933923.1| putative LysR-type transcriptional regulator NahR [Azoarcus sp.
           BH72]
 emb|CAL95036.1| putative LysR-type transcriptional regulator NahR [Azoarcus sp.
           BH72]
          Length = 302

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 109/142 (76%)

Query: 1   MDNLDLRQLRIFLEIYKTQSISQAAASLDLGQPAVSMALAKLREHYGDPLFSRTSGGMLP 60
           M +L++R L +F EIYKT+S+++AA +L LGQPAVS+AL KLREH+GDPLF RTS GM P
Sbjct: 1   MQSLEVRLLTVFDEIYKTRSVTRAADNLGLGQPAVSIALGKLREHFGDPLFVRTSTGMEP 60

Query: 61  TPLAEQIVGPMRLALSTLTSTLQHRVSFDPARSDRLFRLCITDIGQRVIIPRLLAHLKQA 120
           TPL E++V P+R AL  L + L  R +FDP+ + R FR+C+TDI Q V++PRL AHL+  
Sbjct: 61  TPLGEELVQPIRAALDALAAALGRRTAFDPSSAQRSFRICMTDISQLVLLPRLWAHLRAT 120

Query: 121 APAIRMELSYVSERTSKDLESA 142
           AP IR++++++S  T+K LE+ 
Sbjct: 121 APGIRIDIAHLSTETAKMLEAG 142


>ref|YP_157769.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 emb|CAI06868.1| transcriptional regulator, LysR family [Aromatoleum aromaticum
           EbN1]
          Length = 301

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/142 (52%), Positives = 105/142 (73%)

Query: 1   MDNLDLRQLRIFLEIYKTQSISQAAASLDLGQPAVSMALAKLREHYGDPLFSRTSGGMLP 60
           M+ L++RQL +F EIYKT+S+S+AA +L LGQPAVS+AL KLREH+GDPLF RTS GM P
Sbjct: 1   METLEIRQLSVFDEIYKTRSVSRAAENLGLGQPAVSIALGKLREHFGDPLFVRTSAGMEP 60

Query: 61  TPLAEQIVGPMRLALSTLTSTLQHRVSFDPARSDRLFRLCITDIGQRVIIPRLLAHLKQA 120
           TPL E++  P+R+A++ +++   HR  FDP R+ R FR+ +TDI Q V++PRL   L+  
Sbjct: 61  TPLGEELAEPIRVAVAAVSAASGHRAEFDPTRARRTFRIAMTDISQLVLLPRLWERLRTV 120

Query: 121 APAIRMELSYVSERTSKDLESA 142
           AP I ++++ +S  T+  LES 
Sbjct: 121 APGIHIDIANLSANTAGMLESG 142


>ref|YP_004847278.1| LysR family transcriptional regulator [Pseudogulbenkiania sp. NH8B]
 dbj|BAK76864.1| transcriptional regulator, LysR family [Pseudogulbenkiania sp.
           NH8B]
          Length = 303

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 99/142 (69%)

Query: 1   MDNLDLRQLRIFLEIYKTQSISQAAASLDLGQPAVSMALAKLREHYGDPLFSRTSGGMLP 60
           M   D+R L++F EIYKT+S+++AA +L LGQPAVS+ALAKLREH+ DPLF R + GM P
Sbjct: 1   MQTADVRLLQVFDEIYKTRSVTRAADNLGLGQPAVSIALAKLREHFDDPLFVRIANGMEP 60

Query: 61  TPLAEQIVGPMRLALSTLTSTLQHRVSFDPARSDRLFRLCITDIGQRVIIPRLLAHLKQA 120
           TP+A ++   +R AL  L     HR+ FDPA S+R F + +TDI Q V++P+L A L++ 
Sbjct: 61  TPMARELEHAVRQALDALDLVFGHRIDFDPASSERTFCISMTDISQLVLLPKLWAQLRKT 120

Query: 121 APAIRMELSYVSERTSKDLESA 142
           +P + +++  +S  T + LE+ 
Sbjct: 121 SPGVHIDIVPLSTETPRMLETG 142


>ref|ZP_03698663.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gb|EEG08657.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 303

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 99/142 (69%)

Query: 1   MDNLDLRQLRIFLEIYKTQSISQAAASLDLGQPAVSMALAKLREHYGDPLFSRTSGGMLP 60
           M   D+R L++F EIYKT+S+++AA +L LGQPAVS+ALAKLREH+ DPLF R + GM P
Sbjct: 1   MQTADVRLLQVFDEIYKTRSVTRAADNLGLGQPAVSIALAKLREHFDDPLFVRIANGMEP 60

Query: 61  TPLAEQIVGPMRLALSTLTSTLQHRVSFDPARSDRLFRLCITDIGQRVIIPRLLAHLKQA 120
           TP+A ++   +R AL  L     HR+ FDPA S+R F + +TDI Q V++P+L A L++ 
Sbjct: 61  TPMARELEHAVRQALDALDLVFGHRIDFDPASSERTFCISMTDISQLVLLPKLWAQLRKT 120

Query: 121 APAIRMELSYVSERTSKDLESA 142
           +P + +++  +S  T + LE+ 
Sbjct: 121 SPGVHIDIVPLSAETPRMLETG 142


>ref|YP_002942281.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gb|ACS17015.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 299

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/144 (46%), Positives = 88/144 (61%)

Query: 1   MDNLDLRQLRIFLEIYKTQSISQAAASLDLGQPAVSMALAKLREHYGDPLFSRTSGGMLP 60
           M  LDL  L +F E+YKT ++S AA  L L Q A S ALA+LR H+GD LF RTS GM P
Sbjct: 1   MAQLDLEWLLVFDEVYKTANVSSAAERLGLSQSAASTALARLRTHFGDKLFVRTSRGMEP 60

Query: 61  TPLAEQIVGPMRLALSTLTSTLQHRVSFDPARSDRLFRLCITDIGQRVIIPRLLAHLKQA 120
           TP A QI   +   L  L      R SFDPA + R FR+C+TDI + V++P LL HL++ 
Sbjct: 61  TPYARQIQPLVLDILDRLNRAKGGRASFDPASAARSFRICMTDISEVVLLPSLLDHLRRT 120

Query: 121 APAIRMELSYVSERTSKDLESAVL 144
           AP +R+E   +S  + + LE   +
Sbjct: 121 APGVRIETEIISTESGRRLEEGAV 144