BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1985.p         (90 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002547694.1| transcriptional regulator TetR family [Agrob...    83   2e-14
ref|YP_002547698.1| transcriptional regulator TetR family [Agrob...    68   5e-10
ref|YP_003593830.1| TetR family transcriptional regulator [Caulo...    67   1e-09
ref|YP_002892243.1| transcriptional regulator, TetR family [Tolu...    66   2e-09
ref|YP_003739192.1| TetR-family transcriptional regulator [Erwin...    65   3e-09

>ref|YP_002547694.1| transcriptional regulator TetR family [Agrobacterium vitis S4]
 gb|ACM38978.1| transcriptional regulator TetR family [Agrobacterium vitis S4]
          Length = 250

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 57/89 (64%)

Query: 1  MRVKTVEQRNEFIDAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVI 60
          MRV+T  +R   +D AG +F++ GYA V+M A+AAE G SK TLY YF SK +LF AFV+
Sbjct: 1  MRVRTQAKRQAIVDIAGSMFLRHGYAQVSMAAVAAEVGGSKGTLYGYFPSKADLFAAFVV 60

Query: 61 QAGAGAVEELTKVYVEEDSARDILQRLGL 89
          QAG  A   L     +E  A + L+ LG+
Sbjct: 61 QAGEDAFAPLMDAIDKEQDAANTLKALGM 89


>ref|YP_002547698.1| transcriptional regulator TetR family [Agrobacterium vitis S4]
 gb|ACM38982.1| transcriptional regulator TetR family [Agrobacterium vitis S4]
          Length = 219

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 1  MRVKTVEQRNEFIDAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVI 60
          MR K+  +R + +  AG+LF + G+ AV M  IAA  G SK TLYN+F SKE LFEA+VI
Sbjct: 20 MRTKSETKRRQILTIAGNLFREHGFGAVNMAQIAASVGGSKSTLYNHFPSKEALFEAYVI 79

Query: 61 QAG 63
          +AG
Sbjct: 80 EAG 82


>ref|YP_003593830.1| TetR family transcriptional regulator [Caulobacter segnis ATCC
          21756]
 gb|ADG11212.1| transcriptional regulator, TetR family [Caulobacter segnis ATCC
          21756]
          Length = 206

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 56/89 (62%)

Query: 1  MRVKTVEQRNEFIDAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVI 60
          MRVK+  +R   +DAA  +F+++GY A +M  ++A  G SK TLY+YF+SKE+LF A ++
Sbjct: 1  MRVKSETKRKAILDAAKDVFLERGYVAASMAQVSARVGGSKQTLYSYFASKEDLFVAVML 60

Query: 61 QAGAGAVEELTKVYVEEDSARDILQRLGL 89
          + GA  VE L  V+   D   + ++   L
Sbjct: 61 EKGATQVEPLFDVFQASDDLAEAVRAFAL 89


>ref|YP_002892243.1| transcriptional regulator, TetR family [Tolumonas auensis DSM
          9187]
 gb|ACQ92657.1| transcriptional regulator, TetR family [Tolumonas auensis DSM
          9187]
          Length = 199

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 49/90 (54%)

Query: 1  MRVKTVEQRNEFIDAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVI 60
          MRVK+  +R   I+ A   FI+QG+   +M  IA+  G SK TLYNYFSSKEE+F A + 
Sbjct: 1  MRVKSEARRQAIIEVAKDAFIRQGFENTSMSEIASRVGGSKATLYNYFSSKEEIFAAVME 60

Query: 61 QAGAGAVEELTKVYVEEDSARDILQRLGLQ 90
           +    +    K+  + D  R  L   G+ 
Sbjct: 61 SSATEKIANAFKILEDSDDIRTTLTNFGMH 90


>ref|YP_003739192.1| TetR-family transcriptional regulator [Erwinia billingiae Eb661]
 emb|CAX53474.1| TetR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 220

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 1  MRVKTVEQRNEFIDAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVI 60
          MR  T ++R E +D+A  +F+ QGY   +M+ IA +AG SK TLYNYFSSKE LFE  V 
Sbjct: 1  MRTLTEQKRTEILDSASSVFLDQGYERASMDGIAKKAGCSKATLYNYFSSKESLFEMVVR 60

Query: 61 QAG----AGAVEELTKVYVEEDSARDILQRLG 88
                  GA  EL     +  +  + LQR G
Sbjct: 61 TYSTNYLTGAASELKATESDTFTLSEKLQRFG 92