BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1981.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004230819.1| carbohydrate-selective porin OprB [Burkholde... 815 0.0 ref|YP_004230847.1| carbohydrate-selective porin OprB [Burkholde... 634 e-179 ref|YP_002547176.1| Carbohydrate-selective porin [Agrobacterium ... 279 1e-72 ref|YP_002978895.1| Carbohydrate-selective porin OprB [Rhizobium... 268 2e-69 ref|YP_002549449.1| Carbohydrate-selective porin protein [Agroba... 258 2e-66 >ref|YP_004230819.1| carbohydrate-selective porin OprB [Burkholderia sp. CCGE1001] gb|ADX57759.1| Carbohydrate-selective porin OprB [Burkholderia sp. CCGE1001] Length = 513 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 425/513 (82%), Positives = 457/513 (89%) Query: 1 MKLFNKLTGAITIAILTLGCSSLCTMASADNLQAAETTNAASGVGSMPLPDKNASPSRDV 60 MKL NKLTG IT+AI+TLGCSSL MAS + AAE NAASG +PL + S DV Sbjct: 1 MKLSNKLTGVITVAIVTLGCSSLSAMASGTDQPAAEAANAASGAAGVPLTGDDIHTSPDV 60 Query: 61 STSSNRDLLQVQTESGQSPPMVSGVSAPPPSEGQLPRKGPLSSIGDALEERGINLGLRLA 120 S S NR LLQ QTE+GQ+PP V+ VSA PPSEG PRKGPLS IGDALE RGINL L L Sbjct: 61 SVSVNRSLLQAQTETGQNPPTVTSVSAAPPSEGHPPRKGPLSGIGDALEARGINLRLLLT 120 Query: 121 NLSAANPSTGIATGKSTDYFTLFTGADVDLQKFAGIPDTKFHFIWAWEPPSHNTVNYTTQ 180 NL+AANPSTGI+TGKSTDYFTLF GADVDL+K GIP+T+FH AWEPPSHNTV++TTQ Sbjct: 121 NLAAANPSTGISTGKSTDYFTLFMGADVDLEKLVGIPNTRFHITEAWEPPSHNTVSFTTQ 180 Query: 181 TGSAFTPLVPQTTTNDLIKFTLSHDLFEKRLHVEYGRMNLTDDFLVPTMCAGCVASTPAI 240 TGSAFTPLV QTTTNDLIKFTLSHDLFEKRLHVEYGRMNLTDDF + +MCAGCV STPAI Sbjct: 181 TGSAFTPLVQQTTTNDLIKFTLSHDLFEKRLHVEYGRMNLTDDFFLSSMCAGCVVSTPAI 240 Query: 241 TLNVPGITKSLWGVRLAYLLSRHISLGFGVVEDNSTLYMNSTGWNWSSRTRTGVIGIANV 300 TLNVPGITKSLWG R+AYLLS H LG GVVEDNSTL+MNSTGWNWS+R+RTGVIGIANV Sbjct: 241 TLNVPGITKSLWGARVAYLLSSHTRLGLGVVEDNSTLFMNSTGWNWSTRSRTGVIGIANV 300 Query: 301 THKTDFSDTRYPLNAEIGVYHNTSPYTDDLHNVDGSSQILNPSGSALKHGNGTWGFYGQA 360 + TDFSDTRYPLNAE GVYHNTSPYTDDLHNVDGSSQ+LNPSG+ALKHGNGTWGFYGQA Sbjct: 301 MYTTDFSDTRYPLNAEAGVYHNTSPYTDDLHNVDGSSQVLNPSGTALKHGNGTWGFYGQA 360 Query: 361 RKVIWTAPGAKGPTPPNVALYGGAFITPGPGQSFPIEAYGGAEYGGFLRDNPAALVGSII 420 RKVIWTAPG++GP PPNVALYGGAFITPGPGQSFP+EAYGGAEYGGFLR+NPAALVGS+I Sbjct: 361 RKVIWTAPGSEGPVPPNVALYGGAFITPGPGQSFPVEAYGGAEYGGFLRNNPAALVGSVI 420 Query: 421 RYIQLSSGRALYEQQLSTVSGWSSDGVNRNTFSFDVHAQYGLAPGVLVNGFAQYLLHPNR 480 RYIQLS GRALYEQQLSTVSGWS DGVNRNTFSFDVHAQYGLAPGVLVNGFAQYLLHPNR Sbjct: 421 RYIQLSRGRALYEQQLSTVSGWSRDGVNRNTFSFDVHAQYGLAPGVLVNGFAQYLLHPNR 480 Query: 481 MHPLAATGSTRSGWMIGLTLLVDLGRITGLTRP 513 MHPLAATGSTRSGWMIGL+LL+DLGR+TGLT P Sbjct: 481 MHPLAATGSTRSGWMIGLSLLIDLGRVTGLTSP 513 >ref|YP_004230847.1| carbohydrate-selective porin OprB [Burkholderia sp. CCGE1001] gb|ADX57787.1| Carbohydrate-selective porin OprB [Burkholderia sp. CCGE1001] Length = 517 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 323/518 (62%), Positives = 390/518 (75%), Gaps = 6/518 (1%) Query: 1 MKLFNKLTGAITIAILTLGCSSLCTMASADNLQ----AAETTNAASGVGSMPLPDKNASP 56 M+ F A + I+ L + MA+ L+ +A+T + G+ D Sbjct: 1 MQQFTGFVHAGKVLIIALALWPIAAMAAGTELEPRILSADTGKSPKDGGTAVSVDSTTVA 60 Query: 57 SRDVSTSSNRDLLQVQTESGQSPPMVSGVSAPPPSEGQLP-RKGPLSSIGDALEERGINL 115 + S S N L Q TE+GQ+PP V VS PP+ L R+GP+S IGDALE RGI + Sbjct: 61 AIGTSVSDNPSL-QASTETGQNPPGVLSVSVQPPTGEPLGHRQGPMSKIGDALEARGITV 119 Query: 116 GLRLANLSAANPSTGIATGKSTDYFTLFTGADVDLQKFAGIPDTKFHFIWAWEPPSHNTV 175 GL L N ANP+TGI+ G S DYF LF ADVDL K G+P+T FH AWEPPSHNT Sbjct: 120 GLLLTNAYFANPTTGISAGNSVDYFALFMSADVDLSKLIGLPNTHFHITEAWEPPSHNTY 179 Query: 176 NYTTQTGSAFTPLVPQTTTNDLIKFTLSHDLFEKRLHVEYGRMNLTDDFLVPTMCAGCVA 235 Y Q GSAFTP QTT+ DL+KFTLSHDLFEKRLH+EYGRMNLTDDF+V +MC GC+A Sbjct: 180 AYAFQAGSAFTPFPVQTTSTDLVKFTLSHDLFEKRLHIEYGRMNLTDDFMVSSMCTGCLA 239 Query: 236 STPAITLNVPGITKSLWGVRLAYLLSRHISLGFGVVEDNSTLYMNSTGWNWSSRTRTGVI 295 STPAITLNVPG KS+WG R+ Y LSRH LG GV+EDN+ L+ +S GW+W +RTRTGVI Sbjct: 240 STPAITLNVPGFAKSVWGARIGYQLSRHTRLGLGVIEDNTALFTSSAGWDWRTRTRTGVI 299 Query: 296 GIANVTHKTDFSDTRYPLNAEIGVYHNTSPYTDDLHNVDGSSQILNPSGSALKHGNGTWG 355 G+AN+ + TDFSDT YPLNAE G+YH+TSPYTDDLHN DGSSQ LNP G+AL HG+GTWG Sbjct: 300 GVANMLYTTDFSDTPYPLNAEAGLYHSTSPYTDDLHNADGSSQALNPQGTALTHGSGTWG 359 Query: 356 FYGQARKVIWTAPGAKGPTPPNVALYGGAFITPGPGQSFPIEAYGGAEYGGFLRDNPAAL 415 FYGQAR+V+WTA G++GP PN+ALYGGAFITPG GQS+P+EA+GGAEYGGFLRDNP AL Sbjct: 360 FYGQARQVVWTATGSEGPVRPNIALYGGAFITPGAGQSYPVEAFGGAEYGGFLRDNPVAL 419 Query: 416 VGSIIRYIQLSSGRALYEQQLSTVSGWSSDGVNRNTFSFDVHAQYGLAPGVLVNGFAQYL 475 +GS IRYI+LS GRALYEQQLSTV+GW V +NTF+FDVHAQYGLAPG+L+NGFAQY Sbjct: 420 IGSTIRYIRLSRGRALYEQQLSTVNGWGGSSVPQNTFAFDVHAQYGLAPGMLINGFAQYF 479 Query: 476 LHPNRMHPLAATGSTRSGWMIGLTLLVDLGRITGLTRP 513 LHPNR H LAA+G +RSG M+G+ +++DLGR++GLT+P Sbjct: 480 LHPNRTHTLAASGPSRSGLMVGVNVVIDLGRVSGLTKP 517 >ref|YP_002547176.1| Carbohydrate-selective porin [Agrobacterium vitis S4] gb|ACM38460.1| Carbohydrate-selective porin [Agrobacterium vitis S4] Length = 459 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 163/416 (39%), Positives = 225/416 (54%), Gaps = 9/416 (2%) Query: 99 GPLSSIGDALEERGINLGLRLANLSAANPSTGIATGKSTDYFTLFTGADVDLQKFAGIPD 158 GPL+S+G L + GI+L L + PS G A G S +Y G +L PD Sbjct: 45 GPLASVGRTLHDNGIDLQLDFVDFYQNAPSFGAAGGSSANYGMFILGVTGNLT-----PD 99 Query: 159 TKFHFIWAWEPPSHNTVNYTTQTGSAFTPLVPQTTTNDLIKFTLSHDLFEKRLHVEYGRM 218 + + + P+ N NY +AF P+ + DL +FT+ DLF RL VE GRM Sbjct: 100 LRVNLVETINAPTQNVDNYLFDLSNAFFPVPIVNSDTDLTRFTIEGDLFNDRLTVEAGRM 159 Query: 219 NLTDDFLVPTMCAG--CVASTPAITLNVPGITKSLWGVRLAYLLSRHISLGFGVVEDNST 276 L DF+ C G CV STPAITLN+PG S+WG RLAY L + +LGFG +EDNS Sbjct: 160 GLNRDFMKKGFCGGIGCVPSTPAITLNMPGEALSVWGGRLAYRLDQTTTLGFGAIEDNSD 219 Query: 277 LYMNSTGWNWSSRTRTGVIGIANVTHKTDFSDTRYPLNAEIGVYHNTSPYTDDLHNVDGS 336 + N GW+W + G I IAN++H F PL E+G YH ++ Y D L+N Sbjct: 220 NWQNGDGWDWGTGDAKGYIAIANISHDETFMQNANPLKYEVGAYHRSTSYEDALYNSGWG 279 Query: 337 SQILNPSGSALKHGNGTWGFYGQARKVIWTAPGAKGPTPPNVALYGGAFITPGPGQSFPI 396 + + + H GT G YGQ RKV+W+ + P P N+A+YGG F T G GQ++P Sbjct: 280 NPTFGANTKIVNHDGGTSGVYGQVRKVVWSE-ASGSPIPENLAVYGGLFHTFGDGQAYPW 338 Query: 397 EAYGGAEYGGFLRDNPAALVGSIIRYIQLSSGRALYEQQLSTVSGWSSDGVNRNTFSFDV 456 EAY G EY GF ++NP A VG+ + YI+LS RA YEQ ++ ++TF DV Sbjct: 339 EAYAGVEYSGFWKENPLATVGASVHYIRLSEERAQYEQNARRFFSGVNEKQPQDTFMVDV 398 Query: 457 HAQYGLAPGVLVNGFAQYLLHPNR-MHPLAATGSTRSGWMIGLTLLVDLGRITGLT 511 HA G +++ A Y+++PN + +TG ++G +I L DLG GL+ Sbjct: 399 HASTGFFGNGILDFGAAYIINPNNSILADYSTGREKNGVVIYAALAFDLGGSLGLS 454 >ref|YP_002978895.1| Carbohydrate-selective porin OprB [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60344.1| Carbohydrate-selective porin OprB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 459 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 159/408 (38%), Positives = 223/408 (54%), Gaps = 10/408 (2%) Query: 99 GPLSSIGDALEERGINLGLRLANLSAANPSTGIATGKSTDYFTLFTGADVDLQKFAGIPD 158 GPLSS G L + GI++ L N+ PS G G S +Y GA +L PD Sbjct: 46 GPLSSTGKWLHDNGIDINLDYINIYQNAPSFGFERGSSANYGMFVFGATGNLT-----PD 100 Query: 159 TKFHFIWAWEPPSHNTVNYTTQTGSAFTPLVPQTTTNDLIKFTLSHDLFEKRLHVEYGRM 218 + ++ PS NT NY ++F P+ + DL + T+ D E RL +E GRM Sbjct: 101 LRVKWVETINYPSFNTDNYLFDLSNSFFPVPVVDSRTDLTRLTVEADFLEDRLEIEAGRM 160 Query: 219 NLTDDFLVPTMCAG--CVASTPAITLNVPGITKSLWGVRLAYLLSRHISLGFGVVEDNST 276 L DF+ C G CV ST AITLN+PG S+WG R Y L+ + ++G G++EDN+ Sbjct: 161 GLGQDFMTRGYCGGLGCVNSTLAITLNMPGEGLSVWGARGEYHLTPNTAVGLGIIEDNAD 220 Query: 277 LYMNSTGWNWSSRTRTGVIGIANVTHKTDFSDTRYPLNAEIGVYHNTSPYTDDLHNVDGS 336 + +GW+W G+I IAN+TH+ F D PL EIG YH +S Y D L+N Sbjct: 221 NWQEGSGWDWGRGDADGMIAIANLTHQESFFDDPNPLRFEIGAYHRSSRYEDALYNSGWG 280 Query: 337 SQILNPSGSALKHGNGTWGFYGQARKVIWTAPGAKGPTPPNVALYGGAFITPGPGQSFPI 396 + PS + ++H GT G YGQ RKV+W+AP + GP P N+ALYGG F T G GQS+P Sbjct: 281 NPTFGPSPTIIEH-QGTTGVYGQVRKVVWSAPDS-GPIPENIALYGGLFHTFGDGQSYPW 338 Query: 397 EAYGGAEYGGFLRDNPAALVGSIIRYIQLSSGRALYEQQLSTVSGWSSDGVNRNTFSFDV 456 EAY G EY GF +NP A +G+ + Y+ LS RA YE+ + R+TF FDV Sbjct: 339 EAYAGIEYSGFWAENPLATIGASVHYLGLSEKRAEYERNARLFFSGIDEKQPRDTFMFDV 398 Query: 457 HAQYGLAPGVLVNGFAQYLLHPN-RMHPLAATGSTRSGWMIGLTLLVD 503 H G+ +++ A Y+++PN + +T + G+++ TL D Sbjct: 399 HGSVGVFERGVLDLGAAYIVNPNTSVLSDYSTARQQDGFVLYATLAFD 446 >ref|YP_002549449.1| Carbohydrate-selective porin protein [Agrobacterium vitis S4] gb|ACM36441.1| Carbohydrate-selective porin protein [Agrobacterium vitis S4] Length = 477 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 158/451 (35%), Positives = 237/451 (52%), Gaps = 22/451 (4%) Query: 68 LLQVQTESGQSPPMVSGVSAPPPSEGQLPR---KGPLSSIGDALEERGINLGLRLANLSA 124 L + P +V+ V P + G LP +GPL+S+G +L + GI+L L N+ Sbjct: 37 LFGIAVPVAAQPALVADV--PSSALGNLPDPVYEGPLASVGKSLHDNGIDLRLDYFNIYQ 94 Query: 125 ANPSTGIATGKSTDYFTLFTGADVDLQKFAGIPDTKFHFIWAWEPPSHNTVNYTTQTGSA 184 ++P+ G ++ T + G D+ PD + + P+HN Y + Sbjct: 95 SSPTYGFSS-------TAYGGLIFDVTGHLS-PDFRLRLTETFNFPAHNVGGY----ANV 142 Query: 185 FTPLVPQTTTNDLIKFTLSHDLFEKRLHVEYGRMNLTDDFLVPTMCAG--CVASTPAITL 242 F V + DL + T D F+ RL +E GRM L ++F+ C G CV ST TL Sbjct: 143 FVGPVRDKSDTDLTRLTFQADFFDDRLLIEAGRMGLVENFMTRGFCDGPACVNSTQGATL 202 Query: 243 NVPGITKSLWGVRLAYLLSRHISLGFGVVEDNSTLYMNSTGWNWSSRTRTGVIGIANVTH 302 ++P ++WG R AY ++ + + GFG+VE+N+ +++ GW+W + G I +AN+ H Sbjct: 203 HLPEAGLAVWGARAAYKMTPNTTAGFGIVENNTDNWLDGDGWDWEKGSTDGYIAVANIIH 262 Query: 303 KTDFSDTRYPLNAEIGVYHNTSPYTDDLHNVD-GSSQILNPSGSALKHGNGTWGFYGQAR 361 F DT PL EIG Y ++ Y D L++ G+ + S + + H NGT G YGQ R Sbjct: 263 AESFIDTPRPLKFEIGAYRRSAAYNDALYDDGPGNPTFSSASPTVITHKNGTNGLYGQVR 322 Query: 362 KVIWTAPGAKGPTPPNVALYGGAFITPGPGQSFPIEAYGGAEYGGFLRDNPAALVGSIIR 421 KV+W+ P GP P N+A YGG F T G GQ++P EAY G EY GFL +NP +G+ I Sbjct: 323 KVLWSDPNG-GPVPKNLAFYGGVFHTLGEGQAYPWEAYAGLEYSGFLPENPLTTIGASIH 381 Query: 422 YIQLSSGRALYEQQLSTVSGWSSDGVNRNTFSFDVHAQYGLAPGVLVNGFAQYLLHPNRM 481 YI LS RA YE V +++TF FDVHA+ GL ++N A Y+++PN + Sbjct: 382 YIALSEERAQYETNARRVMAGLDQRQSKDTFMFDVHARTGLFNRGVINAGAAYIVNPNTI 441 Query: 482 HPLA-ATGSTRSGWMIGLTLLVDLGRITGLT 511 P ++ + G+ + L DLG GL+ Sbjct: 442 VPTDFSSKQQKDGFFFYVALAFDLGGSLGLS 472