BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1979.p (476 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004230821.1| regulatory protein GntR HTH [Burkholderia sp... 687 0.0 ref|YP_003592844.1| regulatory protein GntR HTH [Caulobacter seg... 405 e-111 ref|YP_003487180.1| hypothetical protein SCAB_14661 [Streptomyce... 185 1e-44 ref|YP_003592834.1| transcriptional regulator-like protein [Caul... 177 3e-42 ref|ZP_08867932.1| transcriptional regulator GntR family [Azospi... 150 5e-34 >ref|YP_004230821.1| regulatory protein GntR HTH [Burkholderia sp. CCGE1001] gb|ADX57761.1| regulatory protein GntR HTH [Burkholderia sp. CCGE1001] Length = 419 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 368/419 (87%), Positives = 384/419 (91%) Query: 58 MTMAQPASAQSYASQRKTVSHWKTANPLFDAIVGGGSANTKAACIIAAQIEEDLIGRSWP 117 MTMAQP SAQSYA+Q TVS WKTANPLFDAIVG SANTKAACIIAAQIEEDLIGRSWP Sbjct: 1 MTMAQPTSAQSYANQGTTVSQWKTANPLFDAIVGARSANTKAACIIAAQIEEDLIGRSWP 60 Query: 118 TGTIYGSETHLESKFGVCRSVVREAVRILESRGTARMRRGPNGGLLILAPSMSLVLEAID 177 TGTIYGSE HLE++FGVCR VVREAVRILESRGTARMRRGPNGGLLILAPSM +VLEA+D Sbjct: 61 TGTIYGSEAHLETRFGVCRVVVREAVRILESRGTARMRRGPNGGLLILAPSMPIVLEALD 120 Query: 178 RYVTSHCRELHRGKDGRTILQAVHARLIGPGAKNCVGPGLASFLEEMISAVNQHARQGPS 237 RYVTSHCRELHRG GRTIL AVHARLIG G K CVG GL FLE +ISAV+QHA +GPS Sbjct: 121 RYVTSHCRELHRGSGGRTILHAVHARLIGSGPKICVGAGLVDFLERLISAVDQHAHEGPS 180 Query: 238 GRIPLGATVESARSRAQHIFRLLMKDLNSSRAIDRRLGSELDLCDRYGADRDVLRQAVRV 297 GR+PLGA ESARSRAQHIFRLLMKDLNSS IDRRLGSELDLCDRYGADRDVLRQAVRV Sbjct: 181 GRVPLGAAAESARSRAQHIFRLLMKDLNSSHEIDRRLGSELDLCDRYGADRDVLRQAVRV 240 Query: 298 LEFEGIAESVAGRGKGLMTRTPEPAALCRLINCYFTAARVTPSDAMSLFKLLSVEAISIA 357 LEFEGIAESVAGRGKGLMTRTPEPAALCRLINCYFTAARVTPSDAMSLFKLLSVEAISIA Sbjct: 241 LEFEGIAESVAGRGKGLMTRTPEPAALCRLINCYFTAARVTPSDAMSLFKLLSVEAISIA 300 Query: 358 AEDATDEELARLKNAQRLLHAADVRMTPKVMQEAEESQFGIIDEPLVDILLRCTKSYSTW 417 AE+ATD ELARLK+ QRLLHAADV +T KVMQEAEESQFGIIDEPLVDILLRCTKSYSTW Sbjct: 301 AEEATDGELARLKDVQRLLHAADVPVTAKVMQEAEESQFGIIDEPLVDILLRCTKSYSTW 360 Query: 418 WSSLRNPQSEQLDIIYRTETLKVISALLERDVTAVAAAQAAKVERLNGLILNQHRAVSA 476 WSS+RNPQSEQLDIIYR ETLKVISALLERDVTA A AQAAKVERLNGL+L Q ++A Sbjct: 361 WSSIRNPQSEQLDIIYRAETLKVISALLERDVTAAATAQAAKVERLNGLVLTQGHILAA 419 >ref|YP_003592844.1| regulatory protein GntR HTH [Caulobacter segnis ATCC 21756] gb|ADG10226.1| regulatory protein GntR HTH [Caulobacter segnis ATCC 21756] Length = 377 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 227/378 (60%), Positives = 281/378 (74%), Gaps = 1/378 (0%) Query: 90 VGGGSANTKAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVRILESR 149 +G ++ KAAC IA +IE DLI R WP GTIYGSE L +FGV R V+REAVRILESR Sbjct: 1 MGATASAKKAACAIARRIEGDLIARGWPIGTIYGSEAELADRFGVSRMVLREAVRILESR 60 Query: 150 GTARMRRGPNGGLLILAPSMSLVLEAIDRYVTSHCRELHRGKDGRTILQAVHARLIGPGA 209 GTARMRRGPNGGLL+LAP M+ VLEAI RYVTSH +G R +L A H + P + Sbjct: 61 GTARMRRGPNGGLLVLAPEMAAVLEAIHRYVTSHRGLDLQGSICRQVLNAAHLQTAHPSS 120 Query: 210 KNCVGPGLASFLEEMISAVNQHARQGPSGRIPLGATVESARSRAQHIFRLLMKDLNSSRA 269 +G G+ FL + +AV +AR+G GRI + AT ARSRA+ +FRLL+KDL +++A Sbjct: 121 GRPIGAGMEDFLAGLTAAVEHYAREGAEGRIAMRAT-PGARSRAEQVFRLLIKDLGNAKA 179 Query: 270 IDRRLGSELDLCDRYGADRDVLRQAVRVLEFEGIAESVAGRGKGLMTRTPEPAALCRLIN 329 +RRLGSE+DLC+RYGADR VLRQAVR+LEFEG+A S AGRGKGLMTR+P+P ALC+LI+ Sbjct: 180 DNRRLGSEMDLCERYGADRSVLRQAVRMLEFEGVAVSTAGRGKGLMTRSPDPTALCQLIS 239 Query: 330 CYFTAARVTPSDAMSLFKLLSVEAISIAAEDATDEELARLKNAQRLLHAADVRMTPKVMQ 389 CYF A VTP DAM++FK LS+E +SIAA AT+ + RLK A+R L ++ VMQ Sbjct: 240 CYFAAVGVTPDDAMAVFKRLSIEVVSIAARVATNSDRTRLKRARRWLSERHGTVSADVMQ 299 Query: 390 EAEESQFGIIDEPLVDILLRCTKSYSTWWSSLRNPQSEQLDIIYRTETLKVISALLERDV 449 AEESQF I+ EPL+DILLRCTKSY +W S+LR+P E L +YR ETLKVI+A+L+R+ Sbjct: 300 LAEESQFRIVSEPLIDILLRCTKSYPSWSSALRDPDDELLGALYREETLKVIAAILDRNP 359 Query: 450 TAVAAAQAAKVERLNGLI 467 A AAAQAAKV+RL LI Sbjct: 360 VAAAAAQAAKVDRLAALI 377 >ref|YP_003487180.1| hypothetical protein SCAB_14661 [Streptomyces scabiei 87.22] emb|CBG68614.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 428 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 208/426 (48%), Gaps = 35/426 (8%) Query: 63 PASAQSYASQRKTVSHWKTANPLFDAIVGGGSANTKAACIIAAQIEEDLIGRSWPTGTIY 122 PA+A S A A+ L D I G A+ K AC IA +EEDLI R WP Sbjct: 13 PAAAMSSAVH--------DASLLADVIDEWGGADEKGACRIARLVEEDLIARGWPQDASL 64 Query: 123 GSETHLESKFGVCRSVVREAVRILESRGTARMRRGPNGGLLILAPSMSLVLEAIDRYVTS 182 GSE L ++GV R+VVREAVRILE RGTARM RGP+G P+ L + +D T+ Sbjct: 65 GSEVELAERYGVGRAVVREAVRILEVRGTARMVRGPSG------PNSGLRVREVDHTRTA 118 Query: 183 HCRELHRGKDGRTILQAVHARLIGPGAKNCVGP----------GLASFLEEMISAVNQHA 232 G T Q V A +N + G S ++ V Sbjct: 119 KFLMGFVLFFGTTEPQLVEAEEAIQRVRNGLSDDVRNDADLIVGQVSVALDLFDDVLGAI 178 Query: 233 RQGPSGR--IPLGATVESA-----RSRAQHIFRLLMKDLNSSRAID-RRLGSELDLCDRY 284 RQ SG IP TV A RSRA I ++++ + + + RLGSE DLC RY Sbjct: 179 RQMMSGNGAIPGNPTVLFAPEVLNRSRAGQITERILRECTAEQWVQGHRLGSEEDLCFRY 238 Query: 285 GADRDVLRQAVRVLEFEGIAESVAGRGKGLMTRTPEPAALCRLINCYFTAARVTPSDAMS 344 G DR RQAVR+LE G AE+ GRG+GL++RTP A+ RL+ C ++ + P M Sbjct: 239 GVDRGAFRQAVRILESAGAAETYCGRGRGLVSRTPRAGAVARLVACLLASSGIHPDIVMR 298 Query: 345 LFKLLSVEAISIAAEDATDEELARLKNA-QRLLHAADVRMTPKVMQ--EAEESQFGIIDE 401 +F+LLSVE +++AAE AT ++ A L A D + EE+ +D Sbjct: 299 IFRLLSVEMVALAAERATPTTCQQIATALSSLRRALDQGANTGLASIFAVEEAALEAVDN 358 Query: 402 PLVDILLRCTKSYSTWWSSLRNPQSEQLDIIYRTETLKVISALLERDVTAVAAAQAAKVE 461 PL+DIL + + Y R ++ +Y T V++A + D A +AQ A+VE Sbjct: 359 PLLDILTQSLRGYPPARIPERISVLSIMNQLYLPLTRPVLAAFRKNDPQAARSAQRARVE 418 Query: 462 RLNGLI 467 + +I Sbjct: 419 TFSNVI 424 >ref|YP_003592834.1| transcriptional regulator-like protein [Caulobacter segnis ATCC 21756] gb|ADG10216.1| Transcriptional regulators-like protein [Caulobacter segnis ATCC 21756] Length = 428 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 145/384 (37%), Positives = 196/384 (51%), Gaps = 20/384 (5%) Query: 98 KAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVRILESRGTARMRRG 157 K AC IA +IEE LI WP G + GSE L +FG R+V+REAVRIL RGTARM RG Sbjct: 40 KGACRIARRIEESLIVSGWPYGAVCGSEQALAERFGAGRAVIREAVRILAVRGTARMVRG 99 Query: 158 PNGGLLILA-----PSMSLVLEAIDRYVTSHCRELHRGKDGRTILQAVHARLIGPGAKNC 212 P GGL +LA + LV + VT + R L L GP + Sbjct: 100 PRGGLQVLALDSRHTAAFLVGFGLFFGVTPVQLDETEAALDRVRLDLDALHLPGPEGTSR 159 Query: 213 VGPGLASFLEEMISAVNQHARQGPSGRIPLGATVESAR-SRAQHIF-RLLMKDLNSSRAI 270 A F E+++ AV Q G S R + T E R SRA I R+L++ A Sbjct: 160 FAAVFA-FFEDVVRAVRQAVSDGGSVRSSVLLTPEHLRHSRAGQIAERMLLECTAEEWAR 218 Query: 271 DRRLGSELDLCDRYGADRDVLRQAVRVLEFEGIAESVAGRGKGLMTRTPEPAALCRLINC 330 RRLGSE DLC RYGADRD RQAVR+LE G AE+ GRG GL+++ P L RL++C Sbjct: 219 GRRLGSEEDLCFRYGADRDAFRQAVRILESAGAAETFCGRGHGLVSQAPREGTLARLVSC 278 Query: 331 YFTAARVTPSDAMSLFKLLSVEAISIAAEDATDEELAR----LKNAQRLLHAADVRMTPK 386 +F + V M +F+ LSV I++AA A+ E+ R L + L D + Sbjct: 279 FFASGGVQAHIVMQVFERLSVGVIAMAASRASAEDCERVSQTLAKLEDSLERQDAVASLP 338 Query: 387 VMQEAEESQFGIIDEPLVDILLRCTKSYSTWWSSLRNPQSEQ-LDIIYR---TETLKVIS 442 + +AEE+ +I PL+ + + + Y S R P+ LD++ R T + ++ Sbjct: 339 HVFDAEEAIASVIANPLLQLFTKSLRGY----PSARIPRDPALLDVMNRRFLTLSRPLLE 394 Query: 443 ALLERDVTAVAAAQAAKVERLNGL 466 AL + A AQ A+V+ L L Sbjct: 395 ALRNNNAQDAARAQKARVQGLARL 418 >ref|ZP_08867932.1| transcriptional regulator GntR family [Azospirillum amazonense Y2] gb|EGY02487.1| transcriptional regulator GntR family [Azospirillum amazonense Y2] Length = 451 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 109/292 (37%), Positives = 155/292 (53%), Gaps = 13/292 (4%) Query: 85 LFDAIVGGGSANTKAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVR 144 L D I + K AC IA IEE LI WP G GSE L FG+ R+V+REAVR Sbjct: 28 LADVIGERRTTGEKGACRIARLIEEKLITGGWPHGMSCGSEQALIEGFGIGRAVIREAVR 87 Query: 145 ILESRGTARMRRGPNGGLLILA--PSMS---LVLEAIDRYVTSHCRELHRGKDG-RTILQ 198 ILE RGTARM RGP GGL +L P + LV + VT C L +D R + Q Sbjct: 88 ILEVRGTARMVRGPGGGLRVLKIDPRRTADFLVGFGLFSGVTDTC--LREAEDALRRVRQ 145 Query: 199 AVHARLIGPGAKNCVGPG-LASFLEEMISAVNQHARQGPSGRIP---LGATVESARSRAQ 254 ++ P + P + F ++++ A+ Q + + L A RSRA Sbjct: 146 SLDVWPHRPSGRAGRQPAAVLDFFDDVVGALRQTMMEANGDTLRPSVLLAPEVLRRSRAG 205 Query: 255 HIFRLLMKDLNSSRAI-DRRLGSELDLCDRYGADRDVLRQAVRVLEFEGIAESVAGRGKG 313 I ++++ + + RLGSE DLC Y +RD+ RQAVR+LE G A + GRG G Sbjct: 206 QIAGRMLRECTVEQWVRGHRLGSEEDLCFHYSVERDIFRQAVRILESVGAAVAFCGRGHG 265 Query: 314 LMTRTPEPAALCRLINCYFTAARVTPSDAMSLFKLLSVEAISIAAEDATDEE 365 L+++ P A+ RL++C F ++ V P M +F+ LSVE +++AA A+ ++ Sbjct: 266 LVSQAPRAGAVARLVSCLFASSEVQPQAVMLVFQRLSVEIVALAAAKASPQD 317