BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1971.p         (234 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_996721.1| hypothetical protein Veis_1950 [Verminephrobact...   176   2e-42
ref|YP_004752389.1| transposase [Collimonas fungivorans Ter331] ...    77   2e-12
ref|YP_004754358.1| transposase [Collimonas fungivorans Ter331] ...    73   3e-11
ref|YP_001100373.1| transposase (partial) [Herminiimonas arsenic...    73   4e-11
ref|YP_001100793.1| transposase (partial) [Herminiimonas arsenic...    72   9e-11

>ref|YP_996721.1| hypothetical protein Veis_1950 [Verminephrobacter eiseniae EF01-2]
 gb|ABM57703.1| hypothetical protein Veis_1950 [Verminephrobacter eiseniae EF01-2]
          Length = 488

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 114/194 (58%)

Query: 40  PLQKTEVYDADLRIISCYVEGDAPVPQESLRLHDFFLNKGITFAQEDADSLEITVPSLPP 99
           PL  + +Y A+LRI SCYV  ++  P++   LHD+ LN+ I+  +   + +++      P
Sbjct: 283 PLGISNMYRAELRITSCYVNNESARPKDGFALHDYLLNRMISLTESLVNKIDVKPFGFLP 342

Query: 100 MPLGNGTKALPAIAPAPMHNVGYLTTDLVPRFPYLLVPYKEGTVITGTPSAGTLGLEMDG 159
               N    LP + P PM + GYL +DL+ RFPYL   +  G  +T  P+ G + ++ DG
Sbjct: 343 GVFPNNVSMLPGVIPGPMRHFGYLVSDLLSRFPYLPANHSVGKSMTAKPTRGGIDIDADG 402

Query: 160 TAIGALKYWNQRWQPSHPSDASTPCGIALVVNNDQFERLAPAPSYKLQHFWELTIHEREN 219
             IG L YWNQRWQP+H     TPCG AL +     E  +P P ++LQ +WEL I ER+N
Sbjct: 403 VHIGHLTYWNQRWQPTHSKGIGTPCGTALTLKEAHLEGFSPNPVFRLQRYWELKIFERDN 462

Query: 220 SYSDWNERVLHGAI 233
           S+ +WN+R L+G +
Sbjct: 463 SHMNWNKRTLYGRV 476


>ref|YP_004752389.1| transposase [Collimonas fungivorans Ter331]
 gb|AEK61566.1| transposase [Collimonas fungivorans Ter331]
          Length = 175

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query: 1   MHADLRVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTPL 41
           +HADL  LGFEGSYDRVAAFARQW++DQLDRVSSASKGT +
Sbjct: 85  IHADLCSLGFEGSYDRVAAFARQWRLDQLDRVSSASKGTSM 125


>ref|YP_004754358.1| transposase [Collimonas fungivorans Ter331]
 gb|AEK63535.1| transposase [Collimonas fungivorans Ter331]
          Length = 144

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query: 1   MHADLRVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGT 39
           +HADL  LGFEGSYDRVAAFARQW++DQLDRV+SASKGT
Sbjct: 85  IHADLCALGFEGSYDRVAAFARQWRLDQLDRVNSASKGT 123


>ref|YP_001100373.1| transposase (partial) [Herminiimonas arsenicoxydans]
          Length = 122

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/39 (84%), Positives = 35/39 (89%)

Query: 1   MHADLRVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGT 39
           MH DL  LGFEGSYDRVAAFARQWKVDQL+RV+SASK T
Sbjct: 82  MHIDLCALGFEGSYDRVAAFARQWKVDQLERVNSASKST 120


>ref|YP_001100793.1| transposase (partial) [Herminiimonas arsenicoxydans]
          Length = 131

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query: 1   MHADLRVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTPLQKTEV 46
           MH DL  LGFEGSYDRVAAF RQWK DQL+RV+SASK T ++K  +
Sbjct: 82  MHIDLYALGFEGSYDRVAAFDRQWKADQLERVNSASKSTQVRKKAI 127