BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1967.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004474911.1| DinB family protein [Pseudomonas fulva 12-X]... 223 8e-57 ref|NP_251186.1| hypothetical protein PA2496 [Pseudomonas aerugi... 164 5e-39 ref|YP_790741.1| putative DNA damage-inducible gene [Pseudomonas... 164 5e-39 ref|ZP_04928817.1| hypothetical protein PACG_01412 [Pseudomonas ... 163 6e-39 ref|ZP_01365860.1| hypothetical protein PaerPA_01002989 [Pseudom... 162 1e-38 >ref|YP_004474911.1| DinB family protein [Pseudomonas fulva 12-X] gb|AEF22817.1| DinB family protein [Pseudomonas fulva 12-X] Length = 182 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 114/159 (71%), Positives = 127/159 (79%) Query: 5 NILEYKHWSDRRILDAVAQLTQEEQKRALDFARQQLNHMVRVEELFQARLRGVADPHDST 64 N L+YK W+DRR LDAVAQL Q AL FARQQLNHMVRVEELF+ARL G PHDST Sbjct: 23 NTLKYKAWADRRTLDAVAQLDPLAQSEALAFARQQLNHMVRVEELFRARLLGEPAPHDST 82 Query: 65 NTEHLPELAELEGRLMAANQWLLSYAKGLSASQLKEYISFTFVDGKRGRLSREEVIFHLI 124 NT+ LP+L EL+ RLMAAN+WL +Y GL+ QL+E I F FVDGK+G LSREE IFHL+ Sbjct: 83 NTDTLPQLDELDRRLMAANRWLAAYLDGLTPGQLQEPIRFVFVDGKQGMLSREEAIFHLV 142 Query: 125 NHGTYHRGAIGHALDLAVGTRPADTYNVFIHAAEPERRN 163 NHGTYHRGAIGHALD A G RPADTY VFIH +EPERRN Sbjct: 143 NHGTYHRGAIGHALDRADGNRPADTYTVFIHESEPERRN 181 >ref|NP_251186.1| hypothetical protein PA2496 [Pseudomonas aeruginosa PAO1] ref|YP_002440393.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa LESB58] ref|ZP_04934249.1| hypothetical protein PA2G_01607 [Pseudomonas aeruginosa 2192] ref|ZP_06878560.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa PAb1] ref|ZP_07793581.1| hypothetical protein PA39016_000970019 [Pseudomonas aeruginosa 39016] gb|AAG05884.1|AE004677_1 hypothetical protein PA2496 [Pseudomonas aeruginosa PAO1] gb|EAZ58368.1| hypothetical protein PA2G_01607 [Pseudomonas aeruginosa 2192] emb|CAW27526.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa LESB58] gb|EFQ38677.1| hypothetical protein PA39016_000970019 [Pseudomonas aeruginosa 39016] gb|EGM21014.1| putative DNA damage-inducible protein [Pseudomonas aeruginosa 138244] gb|EGM21862.1| putative DNA damage-inducible protein [Pseudomonas aeruginosa 152504] dbj|GAA18082.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa NCMG1179] gb|AEO75026.1| putative DNA damage-inducible protein [Pseudomonas aeruginosa M18] dbj|BAK90347.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa NCGM2.S1] Length = 171 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 105/156 (67%) Query: 7 LEYKHWSDRRILDAVAQLTQEEQKRALDFARQQLNHMVRVEELFQARLRGVADPHDSTNT 66 YK WSDRR LDA+A++ E +L FA QQLNHM VEELF+ARL G PH TN+ Sbjct: 15 FNYKAWSDRRTLDAIARIDAEAFPASLAFALQQLNHMAIVEELFRARLLGEPAPHQQTNS 74 Query: 67 EHLPELAELEGRLMAANQWLLSYAKGLSASQLKEYISFTFVDGKRGRLSREEVIFHLINH 126 E +P L RL + W Y L + E++ F F DG+ G ++R+E++FH++NH Sbjct: 75 EVVPGYDVLRRRLEDSAAWFAGYVAELPLERRGEWLRFRFADGRDGGMTRQEILFHIVNH 134 Query: 127 GTYHRGAIGHALDLAVGTRPADTYNVFIHAAEPERR 162 GTYHRGAIGHALDLA RPADTY ++IH+A+PERR Sbjct: 135 GTYHRGAIGHALDLAGAPRPADTYTLYIHSAQPERR 170 >ref|YP_790741.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa UCBPP-PA14] gb|ABJ11676.1| putative DNA damage-inducible gene [Pseudomonas aeruginosa UCBPP-PA14] Length = 171 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 105/156 (67%) Query: 7 LEYKHWSDRRILDAVAQLTQEEQKRALDFARQQLNHMVRVEELFQARLRGVADPHDSTNT 66 YK WSDRR LDA+A++ E +L FA QQLNHM VEELF+ARL G PH TN+ Sbjct: 15 FNYKAWSDRRTLDAIARIDAEAFPASLAFALQQLNHMAIVEELFRARLLGEPAPHQQTNS 74 Query: 67 EHLPELAELEGRLMAANQWLLSYAKGLSASQLKEYISFTFVDGKRGRLSREEVIFHLINH 126 E +P L RL + W Y L + E++ F F DG+ G ++R+E++FH++NH Sbjct: 75 EVVPGYDVLRRRLEDSAAWFAGYVAELPLERRGEWLRFRFADGRDGGMTRQEILFHIVNH 134 Query: 127 GTYHRGAIGHALDLAVGTRPADTYNVFIHAAEPERR 162 GTYHRGAIGHALDLA RPADTY ++IH+A+PERR Sbjct: 135 GTYHRGAIGHALDLAGAPRPADTYTLYIHSAQPERR 170 >ref|ZP_04928817.1| hypothetical protein PACG_01412 [Pseudomonas aeruginosa C3719] gb|EAZ52936.1| hypothetical protein PACG_01412 [Pseudomonas aeruginosa C3719] Length = 171 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 105/156 (67%) Query: 7 LEYKHWSDRRILDAVAQLTQEEQKRALDFARQQLNHMVRVEELFQARLRGVADPHDSTNT 66 YK WSDRR LDA+A++ E +L FA QQLNHM VEELF+ARL G PH TN+ Sbjct: 15 FNYKAWSDRRTLDAIARIDAEAFPASLAFALQQLNHMAIVEELFRARLLGEPAPHQQTNS 74 Query: 67 EHLPELAELEGRLMAANQWLLSYAKGLSASQLKEYISFTFVDGKRGRLSREEVIFHLINH 126 E +P L RL + W Y L + E++ F F DG+ G ++R+E++FH++NH Sbjct: 75 EVVPGYDVLRRRLEDSAAWFAGYVAELPLERRGEWLRFRFADGRDGGMTRQEILFHIVNH 134 Query: 127 GTYHRGAIGHALDLAVGTRPADTYNVFIHAAEPERR 162 GTYHRGAIGHALDLA RPADTY ++IH+A+PERR Sbjct: 135 GTYHRGAIGHALDLAGAPRPADTYTLYIHSAQPERR 170 >ref|ZP_01365860.1| hypothetical protein PaerPA_01002989 [Pseudomonas aeruginosa PACS2] Length = 178 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 105/156 (67%) Query: 7 LEYKHWSDRRILDAVAQLTQEEQKRALDFARQQLNHMVRVEELFQARLRGVADPHDSTNT 66 YK WSDRR LDA+A++ E +L FA QQLNHM VEELF+ARL G PH TN+ Sbjct: 22 FNYKAWSDRRTLDAIARIDAEAFPASLAFALQQLNHMAIVEELFRARLLGEPAPHQQTNS 81 Query: 67 EHLPELAELEGRLMAANQWLLSYAKGLSASQLKEYISFTFVDGKRGRLSREEVIFHLINH 126 E +P L RL + W Y L + E++ F F DG+ G ++R+E++FH++NH Sbjct: 82 EVVPGYDVLRRRLEDSAAWFAGYVAELPLERRGEWLRFRFADGRDGGMTRQEILFHIVNH 141 Query: 127 GTYHRGAIGHALDLAVGTRPADTYNVFIHAAEPERR 162 GTYHRGAIGHALDLA RPADTY ++IH+A+PERR Sbjct: 142 GTYHRGAIGHALDLAGAPRPADTYTLYIHSAQPERR 177