BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1965.p         (148 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773989.1| transcription regulator protein [Herbaspiril...   265   2e-69
ref|YP_001629202.1| putative transcriptional regulator [Bordetel...   204   3e-51
ref|NP_888874.1| transcriptional regulator [Bordetella bronchise...   204   5e-51
ref|ZP_06056288.1| transcriptional regulator [Acinetobacter calc...   201   4e-50
gb|AEP05838.1| putative transcriptional regulator [Acinetobacter...   200   5e-50

>ref|YP_003773989.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62081.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 148

 Score =  265 bits (676), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/148 (87%), Positives = 138/148 (93%)

Query: 1   MSTQLNHDEEYCPVARSVSVVGDRWALLIVRDAFDGVCRFGDFQRNLSVSKNILADRLRK 60
           MS+  +H EE+CPVARSV VVGDRWALLIVRDAFDG+ RFGDFQRNLSVSKNILADRLRK
Sbjct: 1   MSSHADHHEEHCPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRK 60

Query: 61  LVDANILEMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGERHSVLIDAET 120
           LVDANILEMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGE+HSVLID +T
Sbjct: 61  LVDANILEMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGEKHSVLIDTDT 120

Query: 121 GKRVTYMAPLSTDGSPLHPARTLVRKVK 148
           GK V YMAP+S DGS L+PARTLVRKVK
Sbjct: 121 GKPVAYMAPISRDGSHLNPARTLVRKVK 148


>ref|YP_001629202.1| putative transcriptional regulator [Bordetella petrii DSM 12804]
 emb|CAP40931.1| putative transcriptional regulator [Bordetella petrii]
          Length = 147

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 101/140 (72%), Positives = 115/140 (82%)

Query: 8   DEEYCPVARSVSVVGDRWALLIVRDAFDGVCRFGDFQRNLSVSKNILADRLRKLVDANIL 67
           ++E CPVAR+V +VGDRW+LLIVRDAFDG  RFGDFQR L +++NIL+DRLRKLV+A IL
Sbjct: 7   NDEPCPVARAVEIVGDRWSLLIVRDAFDGTRRFGDFQRGLGMARNILSDRLRKLVEAGIL 66

Query: 68  EMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGERHSVLIDAETGKRVTYM 127
           E Q ASDGT+YQEYVLT  G  LFP+VVALRQWGE HLFKRGERHSVLID  TGK +  M
Sbjct: 67  ETQDASDGTAYQEYVLTPQGESLFPVVVALRQWGEQHLFKRGERHSVLIDTRTGKPIPRM 126

Query: 128 APLSTDGSPLHPARTLVRKV 147
           AP + DGS L PA T VRKV
Sbjct: 127 APQARDGSVLTPAATAVRKV 146


>ref|NP_888874.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 emb|CAE32827.1| putative transcriptional regulator [Bordetella bronchiseptica RB50]
          Length = 148

 Score =  204 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 98/141 (69%), Positives = 117/141 (82%)

Query: 8   DEEYCPVARSVSVVGDRWALLIVRDAFDGVCRFGDFQRNLSVSKNILADRLRKLVDANIL 67
           ++E CPVAR V ++GDRW+LLIVRDAFDG  RFGDFQR L V++NIL+DRLRKLV+A +L
Sbjct: 8   NDEPCPVARCVDLIGDRWSLLIVRDAFDGARRFGDFQRGLGVARNILSDRLRKLVEAGVL 67

Query: 68  EMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGERHSVLIDAETGKRVTYM 127
           EMQ ASDG++YQEYVLT  G  LFP++VALRQWGE HLF+RGERHSVLID  TGK V +M
Sbjct: 68  EMQDASDGSAYQEYVLTARGESLFPVLVALRQWGERHLFERGERHSVLIDRRTGKPVAFM 127

Query: 128 APLSTDGSPLHPARTLVRKVK 148
           AP++ DG+ L PA   VRKVK
Sbjct: 128 APVAQDGTALAPAAAEVRKVK 148


>ref|ZP_06056288.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gb|EEY77587.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 148

 Score =  201 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/140 (66%), Positives = 120/140 (85%)

Query: 9   EEYCPVARSVSVVGDRWALLIVRDAFDGVCRFGDFQRNLSVSKNILADRLRKLVDANILE 68
           +E CPVAR V+++GDRW+LLIVRDAFDG+ RFGDFQR+L V++NIL+DRL+KLVDA++LE
Sbjct: 9   DEPCPVARCVNLIGDRWSLLIVRDAFDGMRRFGDFQRSLGVARNILSDRLKKLVDADVLE 68

Query: 69  MQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGERHSVLIDAETGKRVTYMA 128
           MQ ASDGT+YQEYVLT  G  LFP+VVALRQWGE +LF+ GERHS+LID  TG+++ +MA
Sbjct: 69  MQDASDGTAYQEYVLTAKGESLFPVVVALRQWGEQNLFESGERHSLLIDKNTGQQIPFMA 128

Query: 129 PLSTDGSPLHPARTLVRKVK 148
           P++ DG  L+ + T V+KVK
Sbjct: 129 PVAADGKVLNASDTQVQKVK 148


>gb|AEP05838.1| putative transcriptional regulator [Acinetobacter baumannii
           MDR-ZJ06]
          Length = 148

 Score =  200 bits (509), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 93/148 (62%), Positives = 121/148 (81%)

Query: 1   MSTQLNHDEEYCPVARSVSVVGDRWALLIVRDAFDGVCRFGDFQRNLSVSKNILADRLRK 60
           M+  +   EE CPVAR V+++GDRW+LLIVRDAFDG+ RFGDFQR+L V++NIL+DRL+K
Sbjct: 1   MANSILMKEEPCPVARCVNLIGDRWSLLIVRDAFDGMRRFGDFQRSLGVARNILSDRLKK 60

Query: 61  LVDANILEMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGERHSVLIDAET 120
           LV+A +LEMQ ASDGT+YQEYVLT  G  LFP++VALRQWGE +LF+ GERHS+LID  T
Sbjct: 61  LVEAGVLEMQDASDGTAYQEYVLTTKGESLFPVIVALRQWGEHNLFESGERHSLLIDKNT 120

Query: 121 GKRVTYMAPLSTDGSPLHPARTLVRKVK 148
           G+++ +MAP++ DG  L  + T V+KVK
Sbjct: 121 GQQIPFMAPVTADGKVLKASDTQVQKVK 148