BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1960.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08388289.1| efflux transporter, outer membrane factor (OM... 291 2e-76 ref|YP_001260957.1| RND efflux system outer membrane lipoprotein... 275 1e-71 ref|ZP_06860778.1| RND efflux system outer membrane lipoprotein ... 253 4e-65 ref|ZP_05031789.1| efflux transporter, outer membrane factor lip... 227 3e-57 ref|YP_004715521.1| outer membrane protein OprJ [Pseudomonas stu... 222 9e-56 >ref|ZP_08388289.1| efflux transporter, outer membrane factor (OMF) lipo, NodT family protein [Sphingomonas sp. S17] gb|EGI55589.1| efflux transporter, outer membrane factor (OMF) lipo, NodT family protein [Sphingomonas sp. S17] Length = 462 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 222/441 (50%), Positives = 296/441 (67%), Gaps = 12/441 (2%) Query: 22 ACAGPRPGQPEQAAVTLPAQWREPLASTQGISLSRWWEAFADPVLNQLVDQVLAGNSDLA 81 C G RP +P +AV P WR L I+ ++WW+AF DP L LV LA N DL Sbjct: 16 GCIGARPQRPADSAVVAPPAWRTTLGPGSPIA-AQWWQAFGDPQLTALVTTALANNPDLG 74 Query: 82 MAAARVQQARASSRLATAQRMPSLSASGMGAHQGDVDAFGHARVQDAWQAELSLSYELDL 141 AAARV++ARA RLA AQ P+++A + V AFG Q + SY+ DL Sbjct: 75 SAAARVEEARAQERLARAQLSPNITAGVPLSEARTVTAFGTGLDALGAQPVVQASYDFDL 134 Query: 142 FGRLADQDAAARASLLATDAARSTLRLALIATATSTYIALRAQQARLEVLDQTLEMRAQS 201 FGRL AAARA LLAT+AAR T+RLAL + S Y+ LRA RL + ++TL RA + Sbjct: 135 FGRLRSARAAARAQLLATEAARDTVRLALASGVASGYVTLRALDHRLHIAEETLAARADA 194 Query: 202 LQLARRRAQQGYASRLEVEQSQSEYAATEQLIASTRMSISRNEHALALSAG--------- 252 L++ARRRA+ GY S LE+ Q+Q EY +TEQL+A+ +++++R E+AL++ G Sbjct: 195 LRIARRRAETGYTSNLELRQAQGEYRSTEQLVAAAQLAVTRQENALSVLIGGTPGPIARG 254 Query: 253 --LQALTLPAFRPDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVV 310 + L PA PA LLR+RPD+FQAEQ LVAAD +LD+ARAA++PSL + S G+V Sbjct: 255 LPIDRLIRPAIPDGLPADLLRRRPDLFQAEQALVAADRSLDSARAAMLPSLGLTGSAGIV 314 Query: 311 GSNLLPDPLSIFSAGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDA 370 S+ L +PL+IFS GGS+LAP+ D GRLRAQADA+AARRD+AAYAY+KA L A+R+V+D+ Sbjct: 315 LSSALKNPLTIFSIGGSVLAPIFDAGRLRAQADASAARRDQAAYAYRKAALTAFREVDDS 374 Query: 371 LAAARGAQAQQQAVQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQAR 430 LA+ R + Q A+ Q A AL ++ RYRAGYS YLEQLDAQRGLL+A+L +A+ Sbjct: 375 LASVRRSGEQAVALAGQRTAQASALRIASNRYRAGYSSYLEQLDAQRGLLNAELALAEAQ 434 Query: 431 ADRLSAMVSLAQALGGGWEAE 451 A++L+A ++L QA+GGGW E Sbjct: 435 ANQLTAYITLYQAMGGGWSDE 455 >ref|YP_001260957.1| RND efflux system outer membrane lipoprotein [Sphingomonas wittichii RW1] gb|ABQ66819.1| RND efflux system, outer membrane lipoprotein, NodT family [Sphingomonas wittichii RW1] Length = 459 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 196/428 (45%), Positives = 267/428 (62%), Gaps = 17/428 (3%) Query: 36 VTLPAQWRE--PLASTQGISLSRWWEAFADPVLNQLVDQVLAGNSDLAMAAARVQQARAS 93 V PA WR PL++ + WW F DP L LVD+ LA NSD+ +AA RV++ARA+ Sbjct: 28 VDAPAAWRTAAPLSAVE----RDWWTGFGDPALTALVDRALANNSDIGIAAGRVREARAN 83 Query: 94 SRLATAQRMPSLSASGMGAHQGDVDAFGHARVQDAWQAELSLSYELDLFGRLADQDAAAR 153 A A +P+L A+ G + FG A VQ+A Q ++ +YE+DLFGRLADQ +AAR Sbjct: 84 LAAARATLLPTLDANLTGGRTRSISPFGTAEVQNAAQPQVQAAYEIDLFGRLADQRSAAR 143 Query: 154 ASLLATDAARSTLRLALIATATSTYIALRAQQARLEVLDQTLEMRAQSLQLARRRAQQGY 213 ++ LA++AAR +RLA+ + S Y+ L RL++ TL R SL++AR R GY Sbjct: 144 SAYLASEAARDAVRLAIASATASGYVTLLGLDTRLDIARHTLAARGTSLKIARSRVSNGY 203 Query: 214 ASRLEVEQSQSEYAATEQLIASTRMSISRNEHALALSAG-----------LQALTLPAFR 262 + +LE++Q+Q+EY AT ++ ++++R EH L L G L L P Sbjct: 204 SPKLELQQAQAEYDATAAIVPQIELAVARTEHGLNLLTGDTPQAIGRGATLATLAQPPLA 263 Query: 263 PDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVVGSNLLPDPLSIF 322 P+ LLR+RPDI QAE+QL AAD +L AR +P LR+ S G S+LL DP++++ Sbjct: 264 GGLPSELLRRRPDIAQAERQLAAADSSLAVARKRFLPQLRLSASAGAAFSSLLDDPITLW 323 Query: 323 SAGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDALAAARGAQAQQQ 382 GGSILAP+ GGRL AQA+A A +RD+AA+AY+KAVL +R+VEDALA+ R Q Sbjct: 324 QVGGSILAPIFQGGRLTAQAEAAAGQRDQAAFAYRKAVLTGFREVEDALASVRRIDEQVA 383 Query: 383 AVQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQARADRLSAMVSLAQ 442 Q L EAL ++ RYR GYSPYLEQLDAQR LL+A+L Q ++D +A + L Q Sbjct: 384 LAIHQRDTLAEALRLATNRYREGYSPYLEQLDAQRQLLAAELNLAQLQSDGFAARIQLYQ 443 Query: 443 ALGGGWEA 450 ALGGGW A Sbjct: 444 ALGGGWTA 451 >ref|ZP_06860778.1| RND efflux system outer membrane lipoprotein [Citromicrobium bathyomarinum JL354] Length = 428 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 190/424 (44%), Positives = 263/424 (62%), Gaps = 12/424 (2%) Query: 35 AVTLPAQWREPLASTQGISLSRWWEAFADPVLNQLVDQVLAGNSDLAMAAARVQQARASS 94 AV P +WR L + + +RWWE+F DP L++LV+Q N D+ +AAARV +ARA+ Sbjct: 4 AVAPPIEWRTQLGAGAPVE-ARWWESFGDPQLSRLVEQARINNPDVRIAAARVDEARATE 62 Query: 95 RLATAQRMPSLSASGMGAHQGDVDAFGHARVQDAWQAELSLSYELDLFGRLADQDAAARA 154 + + +PSL G Q DV A G + A Q SYELDLFG+ A + AA A Sbjct: 63 QASRGYLLPSLGVGVEGGVQRDVSALGRPQESVAAQPTFRASYELDLFGKNAARVDAAEA 122 Query: 155 SLLATDAARSTLRLALIATATSTYIALRAQQARLEVLDQTLEMRAQSLQLARRRAQQGYA 214 + A+ AA RLA+ A + YI L A ARL VL+ TL R ++L+ AR RA+ GY Sbjct: 123 GVAASAAAEEAARLAVSAATATGYITLLALDARLAVLEDTLAARQEALKFARDRAEVGYT 182 Query: 215 SRLEVEQSQSEYAATEQLIASTRMSISRNEHALALSAG-----------LQALTLPAFRP 263 S+L + Q+++EY AT QL+ + I+R E+AL++ G L L PA Sbjct: 183 SQLPLRQAEAEYQATAQLVPQLKAQIARQENALSVLTGELPGGIERGGTLDELVAPAPPA 242 Query: 264 DQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVVGSNLLPDPLSIFS 323 P+ LLR+RPDI AE ++ AAD + ARA MPS+ +G S G+ S+LL DP+S++S Sbjct: 243 TLPSELLRRRPDIAAAEYRIAAADAKMRVARADFMPSIDLGASAGLALSDLLADPISVWS 302 Query: 324 AGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDALAAARGAQAQQQA 383 GGSILAP+ GGRL+AQ D A+RD+AA+AY+ VL A+R+VED +A QQ A Sbjct: 303 LGGSILAPIFQGGRLQAQLDGATAQRDQAAWAYRSTVLGAFREVEDRMAILANLGEQQTA 362 Query: 384 VQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQARADRLSAMVSLAQA 443 ++ Q+ A+ +AL +R RYRAGY+PY+EQ+DAQR LL +L VQA+AD L+ +V L QA Sbjct: 363 LEAQQSAVADALRHARNRYRAGYTPYIEQVDAQRALLGVELSLVQAKADELTTLVGLYQA 422 Query: 444 LGGG 447 +GG Sbjct: 423 VGGA 426 >ref|ZP_05031789.1| efflux transporter, outer membrane factor lipoprotein, NodT family [Brevundimonas sp. BAL3] gb|EDX79218.1| efflux transporter, outer membrane factor lipoprotein, NodT family [Brevundimonas sp. BAL3] Length = 461 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 193/443 (43%), Positives = 274/443 (61%), Gaps = 13/443 (2%) Query: 17 AAMLAACAGPRPGQ-PEQAAVTLPAQWREPLASTQGISLSRWWEAFADPVLNQLVDQVLA 75 A +++ CA P Q P + AV P WR + + + WW AF D L V++ LA Sbjct: 12 ALVMSGCATVGPTQAPVETAVAAPESWRAETQAGSAVE-AGWWSAFGDAALTAAVEEALA 70 Query: 76 GNSDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQGDVDAFGHARVQDAWQAELSL 135 N+D+A+A +RV++A A + + + PSL+ S +++AFG A Q +L + Sbjct: 71 RNTDIAVAESRVREAEAFAAQSRSALSPSLTGSVAAQEARELNAFGQAAEAALAQPQLQV 130 Query: 136 SYELDLFGRLADQDAAARASLLATDAARSTLRLALIATATSTYIALRAQQARLEVLDQTL 195 +YE+DL+GRL DAAARASL A+ +R L++ Y+AL A A+LEV +TL Sbjct: 131 AYEIDLWGRLRSADAAARASLQASRFSRDAAALSVAGATARAYVALVALDAQLEVASRTL 190 Query: 196 EMRAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIASTRMSISRNEHALALSAG--- 252 R ++ LARRRA+ G SRLE+ Q+++E+ A Q I + ++I R E+AL L G Sbjct: 191 VSREDAVTLARRRAEAGQTSRLELTQAEAEFQAAAQRIPALELAIRRQENALRLLTGALP 250 Query: 253 -------LQALTLPAFRPDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGL 305 AL LP P P++LL +RPDI QAE QLVAAD + ++RAAL+P +R+ Sbjct: 251 GPSARGRFDALILPDPEPGLPSSLLVRRPDIAQAEAQLVAADASFASSRAALLPQVRLSA 310 Query: 306 SGGVVGSNLLPDPLSIFSAGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWR 365 S + L DP++I+SAGGS+LAPL DGGRL AQADA+ ARRD+AA AY++ VL A+ Sbjct: 311 SLAELFVEGL-DPVTIWSAGGSVLAPLFDGGRLTAQADASEARRDQAALAYRRVVLRAFS 369 Query: 366 DVEDALAAARGAQAQQQAVQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLL 425 +VE+A+ QAQ + Q +AL EA+ +R RYRAGY+ YLE+LDAQRGLL+A+ Sbjct: 370 EVENAMEGVDRLQAQADRAEAQRLALNEAVFHARNRYRAGYTSYLEELDAQRGLLTAETA 429 Query: 426 EVQARADRLSAMVSLAQALGGGW 448 +Q R +++ V+L QALGGGW Sbjct: 430 LIQLREMQMTNAVALYQALGGGW 452 >ref|YP_004715521.1| outer membrane protein OprJ [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ06432.1| outer membrane protein OprJ precursor [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 465 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 176/444 (39%), Positives = 250/444 (56%), Gaps = 15/444 (3%) Query: 19 MLAACAGPR-PGQPEQAAVTLPAQWREPLASTQGISLSRWWEAFADPVLNQLVDQVLAGN 77 ++A C PR P PE +P+QWR+P + +++WW F DP L LVD+ LA N Sbjct: 15 VMAGCVPPRQPLPPEARLDEVPSQWRQP--NHGNAPVAQWWRGFGDPALLDLVDRALARN 72 Query: 78 SDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQGDVDAFGHARVQDAWQAELSLSY 137 +D+ + A R+ AR RL+ A +PSL A D+ G R A Q L +Y Sbjct: 73 TDVLIGAERLAAARERIRLSRAALLPSLDAVFGLERSQDLGPLGLTRTTAA-QPGLQFAY 131 Query: 138 ELDLFGRLADQDAAARASLLATDAARSTLRLALIATATSTYIALRAQQARLEVLDQTLEM 197 E+DL+GRLA AA A++A + TLRLAL AT Y+AL + +L++ +T+ Sbjct: 132 EVDLWGRLASLREAAELQFQASEAEQQTLRLALAATVAQGYVALLSLDRQLQLTHETVRS 191 Query: 198 RAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIASTRMSISRNEHALALSAG----- 252 R +L +A R++ GY S LE Q++SEY A QL+ + EHAL G Sbjct: 192 RRAALAVAEDRSRMGYTSELEQTQARSEYEAAAQLVPRLEQASLEQEHALRRLTGDPPGP 251 Query: 253 -----LQALTLPAFRPDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSG 307 L AL PA P+ALLRQRPD++QAE QL A+D LD+ R +P +++ S Sbjct: 252 VPRGTLAALQAPAVPGSLPSALLRQRPDLYQAELQLAASDRFLDSERDRFLPRVQLSASL 311 Query: 308 GVVGSNLLP-DPLSIFSAGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRD 366 G + + L DP+ ++S G S+LAPL DG RL A A R++AAYAY++A L A+ + Sbjct: 312 GRLYVDALDYDPVKVWSLGASVLAPLFDGERLEAGVAVATAERNQAAYAYRRAALNAFSE 371 Query: 367 VEDALAAARGAQAQQQAVQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLE 426 VE+AL+ Q + ++ + L +LA++ RY GYS YLE LDAQR L QL E Sbjct: 372 VENALSGLDSLARQSRRLEARREVLARSLAIAEDRYHGGYSSYLEALDAQRNLFDTQLAE 431 Query: 427 VQARADRLSAMVSLAQALGGGWEA 450 VQ + +L+ ++ L +ALGGGW A Sbjct: 432 VQLQEAQLNRLIELYRALGGGWRA 455