BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1958.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02375312.1| cytochrome c4, putative [Burkholderia thailan... 237 1e-60 ref|YP_443390.1| cytochrome c4 [Burkholderia thailandensis E264]... 236 2e-60 ref|YP_001204328.1| putative cytochrome c [Bradyrhizobium sp. OR... 235 5e-60 ref|ZP_02462978.1| possible cytochrome c [Burkholderia thailande... 235 5e-60 ref|YP_107877.1| putative cytochrome c [Burkholderia pseudomalle... 232 4e-59 >ref|ZP_02375312.1| cytochrome c4, putative [Burkholderia thailandensis TXDOH] ref|ZP_02389161.1| cytochrome c4, putative [Burkholderia thailandensis Bt4] ref|ZP_05587901.1| cytochrome c4, putative [Burkholderia thailandensis E264] Length = 226 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 123/206 (59%), Positives = 159/206 (77%) Query: 61 RKLDSMEARMQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYL 120 R D+MEAR+ AC CHG+QG+GTS++YFPR++GKPA YLYNQL+AFR+GRR YPPMNYL Sbjct: 19 RAPDTMEARVLACAACHGRQGEGTSNDYFPRLSGKPAGYLYNQLVAFRDGRRKYPPMNYL 78 Query: 121 VSYLPDAYLKEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHG 180 ++YLPDAYL++IAD+FA++RP F AA ++ + ERGR LV+ GD AH IPAC +CHG Sbjct: 79 LAYLPDAYLRKIADHFASRRPPFPVIAAPAVAPAVLERGRQLVKSGDPAHKIPACASCHG 138 Query: 181 KQLTGMLPGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWL 240 LTGM P IPGL GL Y++ QL WR G R + PDCM+++A+RLTD+D++A+A WL Sbjct: 139 ASLTGMEPAIPGLLGLHAEYLSAQLGAWRYGTRTSYAPDCMQQVASRLTDTDVTAIAAWL 198 Query: 241 AQQPAPDNAAPEASNLIRMPLACGSQ 266 A QPAP N P + + MPLACGS+ Sbjct: 199 ASQPAPANPLPAPAGSLDMPLACGSE 224 >ref|YP_443390.1| cytochrome c4 [Burkholderia thailandensis E264] gb|ABC36979.1| cytochrome c4, putative [Burkholderia thailandensis E264] Length = 238 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 123/206 (59%), Positives = 159/206 (77%) Query: 61 RKLDSMEARMQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYL 120 R D+MEAR+ AC CHG+QG+GTS++YFPR++GKPA YLYNQL+AFR+GRR YPPMNYL Sbjct: 31 RAPDTMEARVLACAACHGRQGEGTSNDYFPRLSGKPAGYLYNQLVAFRDGRRKYPPMNYL 90 Query: 121 VSYLPDAYLKEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHG 180 ++YLPDAYL++IAD+FA++RP F AA ++ + ERGR LV+ GD AH IPAC +CHG Sbjct: 91 LAYLPDAYLRKIADHFASRRPPFPVIAAPAVAPAVLERGRQLVKSGDPAHKIPACASCHG 150 Query: 181 KQLTGMLPGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWL 240 LTGM P IPGL GL Y++ QL WR G R + PDCM+++A+RLTD+D++A+A WL Sbjct: 151 ASLTGMEPAIPGLLGLHAEYLSAQLGAWRYGTRTSYAPDCMQQVASRLTDTDVTAIAAWL 210 Query: 241 AQQPAPDNAAPEASNLIRMPLACGSQ 266 A QPAP N P + + MPLACGS+ Sbjct: 211 ASQPAPANPLPAPAGSLDMPLACGSE 236 >ref|YP_001204328.1| putative cytochrome c [Bradyrhizobium sp. ORS 278] emb|CAL76091.1| Putative cytochrome c [Bradyrhizobium sp. ORS 278] Length = 273 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 119/202 (58%), Positives = 149/202 (73%) Query: 64 DSMEARMQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYLVSY 123 D+M AR++AC CHG +G+GTSD YFPR+AGKP+ YLYNQLLAFR GRR YPPMNYL+ + Sbjct: 69 DTMAARVEACTPCHGNKGEGTSDIYFPRLAGKPSGYLYNQLLAFRTGRRKYPPMNYLLEF 128 Query: 124 LPDAYLKEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHGKQL 183 LP+ YL+++ADYFA QRP AA +S + RG LV GDAA IPAC +CHG QL Sbjct: 129 LPNDYLQDMADYFAGQRPPLPQPAATAVSDEILRRGEVLVTGGDAASQIPACASCHGLQL 188 Query: 184 TGMLPGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWLAQQ 243 TGM PGIPGL GL+P Y++ QL WR G R A PDCM+R+A +LT++D++AVA +LA Sbjct: 189 TGMEPGIPGLLGLRPNYVSAQLGAWRYGTRTAKSPDCMQRVAAKLTEADVTAVAAYLATL 248 Query: 244 PAPDNAAPEASNLIRMPLACGS 265 PA +NAAP + +P ACGS Sbjct: 249 PASENAAPLPKGIYVLPFACGS 270 >ref|ZP_02462978.1| possible cytochrome c [Burkholderia thailandensis MSMB43] Length = 222 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 121/206 (58%), Positives = 161/206 (78%) Query: 61 RKLDSMEARMQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYL 120 R D+MEAR+ AC CHG+QG+GTS++YFPR++GKPA YLYNQL+AFR+GRR YPPMNYL Sbjct: 15 RAPDTMEARVLACAACHGRQGEGTSNDYFPRLSGKPAGYLYNQLVAFRDGRRKYPPMNYL 74 Query: 121 VSYLPDAYLKEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHG 180 ++YLPDAYL++IAD+FA++RP F T AA ++ + ERGR LVQ GD +H +PAC +CHG Sbjct: 75 LAYLPDAYLRKIADHFASRRPPFPTIAAPAVAPAVLERGRQLVQSGDPSHKVPACASCHG 134 Query: 181 KQLTGMLPGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWL 240 LTGM P +PGL GL Y++ QL WR G R + PDCM+++A+RLTD+D++A++ WL Sbjct: 135 ASLTGMEPAVPGLLGLHAEYLSAQLGAWRYGTRTSYAPDCMQQVASRLTDTDVTAISAWL 194 Query: 241 AQQPAPDNAAPEASNLIRMPLACGSQ 266 A QPAP N +P + + MPLACGS+ Sbjct: 195 ASQPAPANPSPAPAGSLDMPLACGSE 220 >ref|YP_107877.1| putative cytochrome c [Burkholderia pseudomallei K96243] ref|YP_332892.1| cytochrome c [Burkholderia pseudomallei 1710b] ref|ZP_04965607.1| putative cytochrome c [Burkholderia pseudomallei 406e] emb|CAH35250.1| putative cytochrome c precursor [Burkholderia pseudomallei K96243] gb|ABA48446.1| possible cytochrome c [Burkholderia pseudomallei 1710b] gb|EDO84893.1| putative cytochrome c [Burkholderia pseudomallei 406e] Length = 238 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 121/206 (58%), Positives = 160/206 (77%) Query: 61 RKLDSMEARMQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYL 120 R D+MEAR+ AC CHG+QG+GTS++YFPR++GKPA YLYNQL+AFR+GRR YPPMNYL Sbjct: 31 RAPDTMEARVLACAACHGRQGEGTSNDYFPRLSGKPAGYLYNQLVAFRDGRRKYPPMNYL 90 Query: 121 VSYLPDAYLKEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHG 180 ++YLPDAYL++IAD+FA++RP F T AA + + ERGR LV+ GD +H IPAC +CHG Sbjct: 91 LAYLPDAYLRKIADHFASRRPPFPTIAAPAAAPAVLERGRLLVKSGDPSHKIPACASCHG 150 Query: 181 KQLTGMLPGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWL 240 LTGM P +PGL GL Y++ QL WR G R + PDCM+++A+RLTD+D++A++ WL Sbjct: 151 ASLTGMEPAVPGLLGLHAEYLSAQLGAWRYGTRTSIAPDCMQQVASRLTDTDVTAISAWL 210 Query: 241 AQQPAPDNAAPEASNLIRMPLACGSQ 266 A QPAP N +P + + MPLACGS+ Sbjct: 211 ASQPAPANPSPAPAGSLDMPLACGSE 236