BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1957.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001115322.1| cytochrome c, class I [Burkholderia vietnami... 540 e-151 ref|YP_001065629.1| cytochrome c family protein [Burkholderia ps... 536 e-150 ref|YP_468522.1| cytochrome-c oxidase [Rhizobium etli CFN 42] >g... 536 e-150 ref|YP_107878.1| putative cytochrome c [Burkholderia pseudomalle... 535 e-150 ref|ZP_04894769.1| cytochrome c family protein [Burkholderia pse... 535 e-150 >ref|YP_001115322.1| cytochrome c, class I [Burkholderia vietnamiensis G4] gb|ABO59067.1| cytochrome c, class I [Burkholderia vietnamiensis G4] Length = 447 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 260/387 (67%), Positives = 307/387 (79%), Gaps = 3/387 (0%) Query: 40 TAGNDIISRGQYLARVGDCVACHTASNGPLFAGGRPMPTPFGNLYVPNITPDDETGIGRW 99 +A D+I RG+YLAR GDC+ACHT + LFAGGR MPTPFG LY PNITPD ETGIGRW Sbjct: 56 SAKVDVIKRGEYLARAGDCIACHTQPSDKLFAGGRAMPTPFGTLYSPNITPDAETGIGRW 115 Query: 100 SADDFHRMMHHGISPDGSLLYPAMPYASYTQVTREDNDAIYAYLMSVPPVKKKNREHELR 159 S+D+F+ MMH G S DGS+LYPAMPYA+YT+VTRED+DAIYAYLMSVPPV++ NR H++R Sbjct: 116 SSDEFYAMMHTGRSRDGSILYPAMPYAAYTKVTREDSDAIYAYLMSVPPVRRPNRPHDMR 175 Query: 160 FPFNQRELLLGWRSLYFKPGEFQSDPGQTVEWNRGAYLVKGLGHCTMCHTAINALGGSSN 219 FP+N RELLLGWR+LYF+ G ++ D ++VEWNRGAYLV+GLGHC+MCHTAINALGGSS Sbjct: 176 FPYNNRELLLGWRTLYFREGVYKPDHEKSVEWNRGAYLVRGLGHCSMCHTAINALGGSSE 235 Query: 220 AKAFEGGMIPNQNWYAPSLTSNMEAGLGNWEIGEIADLLRKGASHRGTVYGPMAEVVYNS 279 +KAFEGG+IP Q+WYAPSLTS+ EAGLG W I +I DLL+KG S RG VYGPMAEVVY+S Sbjct: 236 SKAFEGGLIPMQDWYAPSLTSSREAGLGAWSIADITDLLQKGVSRRGAVYGPMAEVVYDS 295 Query: 280 LQYLTDEDVRAMAVYLKSLPQKQESPPPAPKDRLVAPEKMEL---GRTLYSAQCAVCHGA 336 LQYL+D+DVRAMAVYLKSLPQ P + E+ L G +Y +QCA CHG Sbjct: 296 LQYLSDDDVRAMAVYLKSLPQHGGEGAAEPTSSMSRDERNRLFRVGSKIYDSQCATCHGK 355 Query: 337 NGRGMPPAYPPLAGNPSITMASPVNPIRMVLNGGFPPGTIDNPRPHGMPPFSHILKDDEI 396 NG G P +PPLA N SI M S VNPIRMVLNGG+ PGT NP P+GMPPF+ + DDE+ Sbjct: 356 NGEGKLPDFPPLANNQSIQMVSAVNPIRMVLNGGYAPGTAKNPMPYGMPPFAQSMSDDEV 415 Query: 397 AAVVTYIRVAWGNGGMPVAGQVVNDLR 423 AAVVT+IR AWGN GMPV+ + N LR Sbjct: 416 AAVVTFIRTAWGNRGMPVSAKDANALR 442 >ref|YP_001065629.1| cytochrome c family protein [Burkholderia pseudomallei 1106a] ref|ZP_04813793.1| cytochrome c family protein [Burkholderia pseudomallei 1106b] gb|ABN89186.1| cytochrome c family protein [Burkholderia pseudomallei 1106a] gb|EES24418.1| cytochrome c family protein [Burkholderia pseudomallei 1106b] Length = 430 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 264/398 (66%), Positives = 309/398 (77%), Gaps = 12/398 (3%) Query: 29 EPAASAAPLLRTAGNDIISRGQYLARVGDCVACHTASNGPLFAGGRPMPTPFGNLYVPNI 88 +PAA AA L RG+YLAR GDCVACHT LFAGGR MPTPFG LY PNI Sbjct: 37 QPAADAATL---------KRGEYLARAGDCVACHTVPGEKLFAGGRAMPTPFGTLYSPNI 87 Query: 89 TPDDETGIGRWSADDFHRMMHHGISPDGSLLYPAMPYASYTQVTREDNDAIYAYLMSVPP 148 TPD++ GIG+W+AD+F+ MMH G S DGSLLYPAMP+A+YT+VTR D+DAI+AYL SVPP Sbjct: 88 TPDNDAGIGKWTADEFYTMMHTGRSRDGSLLYPAMPFAAYTKVTRADSDAIFAYLRSVPP 147 Query: 149 VKKKNREHELRFPFNQRELLLGWRSLYFKPGEFQSDPGQTVEWNRGAYLVKGLGHCTMCH 208 VK NR H++RFP+N R+LL+GWR+LYFK GE+Q D ++ EWNRGAYLV+GLGHC+MCH Sbjct: 148 VKLANRPHDMRFPYNNRQLLIGWRTLYFKEGEYQPDHTKSAEWNRGAYLVQGLGHCSMCH 207 Query: 209 TAINALGGSSNAKAFEGGMIPNQNWYAPSLTSNMEAGLGNWEIGEIADLLRKGASHRGTV 268 TAINALGGSS A AFEGG+IP Q WYAPSLTSN EAGLG+W I +I LL+ GASHRG V Sbjct: 208 TAINALGGSSEANAFEGGLIPMQAWYAPSLTSNKEAGLGDWSIADITGLLQAGASHRGAV 267 Query: 269 YGPMAEVVYNSLQYLTDEDVRAMAVYLKSLPQKQESPPPAPKDRLVAPEKM---ELGRTL 325 YGPMAEVVY+SLQYL+D+DVRAM+VYLKSLPQ+ APK + A E+ +LG + Sbjct: 268 YGPMAEVVYDSLQYLSDDDVRAMSVYLKSLPQRGSDAESAPKTTMAASEQARLSKLGAKI 327 Query: 326 YSAQCAVCHGANGRGMPPAYPPLAGNPSITMASPVNPIRMVLNGGFPPGTIDNPRPHGMP 385 Y AQCA CHG GRG PA+PPLAGN SI M S VNPIRMVLNGG+ PGT NP P+GMP Sbjct: 328 YDAQCASCHGKTGRGKTPAFPPLAGNQSIQMTSAVNPIRMVLNGGYAPGTAKNPEPYGMP 387 Query: 386 PFSHILKDDEIAAVVTYIRVAWGNGGMPVAGQVVNDLR 423 PF+ L DDE+AAV T+IR AWGN G PV+ + N LR Sbjct: 388 PFAQSLSDDEVAAVTTFIRTAWGNRGAPVSAKEANALR 425 >ref|YP_468522.1| cytochrome-c oxidase [Rhizobium etli CFN 42] gb|ABC89795.1| probable cytochrome-c oxidase protein [Rhizobium etli CFN 42] Length = 416 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 263/406 (64%), Positives = 312/406 (76%) Query: 18 AASTSWLYLGREPAASAAPLLRTAGNDIISRGQYLARVGDCVACHTASNGPLFAGGRPMP 77 A ++ L L P +A + A D++ +G+YLAR GDCVACHTA G +FAGGR MP Sbjct: 6 AIFSAMLALAATPMPAAPQSPQPAPPDVVKKGEYLARAGDCVACHTAPEGRVFAGGRAMP 65 Query: 78 TPFGNLYVPNITPDDETGIGRWSADDFHRMMHHGISPDGSLLYPAMPYASYTQVTREDND 137 TPFG LY NITPD+ETGIGRWS+DDF++ MHHG PDG LLYPAMP+ SYT+VTRED+D Sbjct: 66 TPFGTLYTSNITPDEETGIGRWSSDDFYKTMHHGRFPDGGLLYPAMPFGSYTKVTREDSD 125 Query: 138 AIYAYLMSVPPVKKKNREHELRFPFNQRELLLGWRSLYFKPGEFQSDPGQTVEWNRGAYL 197 AI+AYL ++ PV + +R HEL FP+N R L+LGWR+LYF GEF+ DPGQ+ EWNRGAYL Sbjct: 126 AIFAYLKAIAPVHQPDRPHELDFPYNNRSLILGWRTLYFNEGEFKPDPGQSEEWNRGAYL 185 Query: 198 VKGLGHCTMCHTAINALGGSSNAKAFEGGMIPNQNWYAPSLTSNMEAGLGNWEIGEIADL 257 V+GLGHC MCHT INALGGSS ++AF+GG+IP Q+WYAPSLTSN EAGLG+W I EI+DL Sbjct: 186 VEGLGHCGMCHTPINALGGSSESEAFKGGLIPMQDWYAPSLTSNKEAGLGDWSIEEISDL 245 Query: 258 LRKGASHRGTVYGPMAEVVYNSLQYLTDEDVRAMAVYLKSLPQKQESPPPAPKDRLVAPE 317 L+KG S RG VYGPMAEVVYNSLQY+TDED+RAMAVYLKS+ Q + +PP A Sbjct: 246 LQKGISTRGAVYGPMAEVVYNSLQYMTDEDIRAMAVYLKSIAQDEPAPPRPSVRTEEASL 305 Query: 318 KMELGRTLYSAQCAVCHGANGRGMPPAYPPLAGNPSITMASPVNPIRMVLNGGFPPGTID 377 + LG+T+Y +CA CHG G G PP YPPLAGN SI M S VN IRMVLNGG+PP TI Sbjct: 306 LISLGKTVYDKECASCHGFEGEGKPPHYPPLAGNQSIQMESAVNGIRMVLNGGYPPATIK 365 Query: 378 NPRPHGMPPFSHILKDDEIAAVVTYIRVAWGNGGMPVAGQVVNDLR 423 NP PHGMPPF+ L DDE+AAVV+YIR AWGN G PV+ N LR Sbjct: 366 NPMPHGMPPFAVSLSDDEVAAVVSYIRTAWGNRGTPVSAAEANKLR 411 >ref|YP_107878.1| putative cytochrome c [Burkholderia pseudomallei K96243] ref|YP_332893.1| cytochrome C [Burkholderia pseudomallei 1710b] ref|YP_001058393.1| cytochrome c family protein [Burkholderia pseudomallei 668] ref|ZP_01770541.1| cytochrome c family protein [Burkholderia pseudomallei 305] ref|ZP_02410685.1| cytochrome c family protein [Burkholderia pseudomallei 14] ref|ZP_02446773.1| cytochrome c family protein [Burkholderia pseudomallei 91] ref|ZP_02454981.1| cytochrome c family protein [Burkholderia pseudomallei 9] ref|ZP_02470568.1| cytochrome c family protein [Burkholderia pseudomallei B7210] ref|ZP_02489253.1| cytochrome c family protein [Burkholderia pseudomallei NCTC 13177] ref|ZP_02497377.1| cytochrome c family protein [Burkholderia pseudomallei 112] ref|ZP_02505408.1| cytochrome c family protein [Burkholderia pseudomallei BCC215] ref|ZP_03455158.1| cytochrome c family protein [Burkholderia pseudomallei 576] ref|ZP_03793085.1| cytochrome c family protein [Burkholderia pseudomallei Pakistan 9] ref|YP_002896086.1| cytochrome c family protein [Burkholderia pseudomallei MSHR346] ref|ZP_04965606.1| cytochrome c family protein [Burkholderia pseudomallei 406e] emb|CAH35251.1| putative cytochrome c precursor [Burkholderia pseudomallei K96243] gb|ABA47644.1| cytochrome C [Burkholderia pseudomallei 1710b] gb|ABN85293.1| cytochrome c family protein [Burkholderia pseudomallei 668] gb|EBA44929.1| cytochrome c family protein [Burkholderia pseudomallei 305] gb|EDO84347.1| cytochrome c family protein [Burkholderia pseudomallei 406e] gb|EEC33536.1| cytochrome c family protein [Burkholderia pseudomallei 576] gb|EEH26426.1| cytochrome c family protein [Burkholderia pseudomallei Pakistan 9] gb|ACQ97429.1| cytochrome c family protein [Burkholderia pseudomallei MSHR346] Length = 430 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 258/381 (67%), Positives = 303/381 (79%), Gaps = 3/381 (0%) Query: 46 ISRGQYLARVGDCVACHTASNGPLFAGGRPMPTPFGNLYVPNITPDDETGIGRWSADDFH 105 + RG+YLAR GDCVACHT LFAGGR MPTPFG LY PNITPD++ GIG+W+AD+F+ Sbjct: 45 LKRGEYLARAGDCVACHTVPGEKLFAGGRAMPTPFGTLYSPNITPDNDAGIGKWTADEFY 104 Query: 106 RMMHHGISPDGSLLYPAMPYASYTQVTREDNDAIYAYLMSVPPVKKKNREHELRFPFNQR 165 MMH G S DGSLLYPAMP+A+YT+VTR D+DAI+AYL SVPPVK NR H++RFP+N R Sbjct: 105 TMMHTGRSRDGSLLYPAMPFAAYTKVTRADSDAIFAYLRSVPPVKLANRPHDMRFPYNNR 164 Query: 166 ELLLGWRSLYFKPGEFQSDPGQTVEWNRGAYLVKGLGHCTMCHTAINALGGSSNAKAFEG 225 +LL+GWR+LYFK GE+Q D ++ EWNRGAYLV+GLGHC+MCHTAINALGGSS A AFEG Sbjct: 165 QLLIGWRTLYFKEGEYQPDHTKSAEWNRGAYLVQGLGHCSMCHTAINALGGSSEANAFEG 224 Query: 226 GMIPNQNWYAPSLTSNMEAGLGNWEIGEIADLLRKGASHRGTVYGPMAEVVYNSLQYLTD 285 G+IP Q WYAPSLTSN EAGLG+W I +I LL+ GASHRG VYGPMAEVVY+SLQYL+D Sbjct: 225 GLIPMQAWYAPSLTSNKEAGLGDWSIADITGLLQAGASHRGAVYGPMAEVVYDSLQYLSD 284 Query: 286 EDVRAMAVYLKSLPQKQESPPPAPKDRLVAPEKM---ELGRTLYSAQCAVCHGANGRGMP 342 +DVRAM+VYLKSLPQ+ APK + A E+ +LG +Y AQCA CHG GRG Sbjct: 285 DDVRAMSVYLKSLPQRGSDAESAPKTTMAASEQARLSKLGAKIYDAQCASCHGKTGRGKT 344 Query: 343 PAYPPLAGNPSITMASPVNPIRMVLNGGFPPGTIDNPRPHGMPPFSHILKDDEIAAVVTY 402 PA+PPLAGN SI M S VNPIRMVLNGG+ PGT NP P+GMPPF+ L DDE+AAV T+ Sbjct: 345 PAFPPLAGNQSIQMTSAVNPIRMVLNGGYAPGTAKNPEPYGMPPFAQSLSDDEVAAVTTF 404 Query: 403 IRVAWGNGGMPVAGQVVNDLR 423 IR AWGN G PV+ + N LR Sbjct: 405 IRTAWGNRGAPVSAKEANALR 425 >ref|ZP_04894769.1| cytochrome c family protein [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04952817.1| cytochrome c family protein [Burkholderia pseudomallei 1710a] gb|EDO91607.1| cytochrome c family protein [Burkholderia pseudomallei Pasteur 52237] gb|EET09836.1| cytochrome c family protein [Burkholderia pseudomallei 1710a] Length = 426 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 258/381 (67%), Positives = 303/381 (79%), Gaps = 3/381 (0%) Query: 46 ISRGQYLARVGDCVACHTASNGPLFAGGRPMPTPFGNLYVPNITPDDETGIGRWSADDFH 105 + RG+YLAR GDCVACHT LFAGGR MPTPFG LY PNITPD++ GIG+W+AD+F+ Sbjct: 41 LKRGEYLARAGDCVACHTVPGEKLFAGGRAMPTPFGTLYSPNITPDNDAGIGKWTADEFY 100 Query: 106 RMMHHGISPDGSLLYPAMPYASYTQVTREDNDAIYAYLMSVPPVKKKNREHELRFPFNQR 165 MMH G S DGSLLYPAMP+A+YT+VTR D+DAI+AYL SVPPVK NR H++RFP+N R Sbjct: 101 TMMHTGRSRDGSLLYPAMPFAAYTKVTRADSDAIFAYLRSVPPVKLANRPHDMRFPYNNR 160 Query: 166 ELLLGWRSLYFKPGEFQSDPGQTVEWNRGAYLVKGLGHCTMCHTAINALGGSSNAKAFEG 225 +LL+GWR+LYFK GE+Q D ++ EWNRGAYLV+GLGHC+MCHTAINALGGSS A AFEG Sbjct: 161 QLLIGWRTLYFKEGEYQPDHTKSAEWNRGAYLVQGLGHCSMCHTAINALGGSSEANAFEG 220 Query: 226 GMIPNQNWYAPSLTSNMEAGLGNWEIGEIADLLRKGASHRGTVYGPMAEVVYNSLQYLTD 285 G+IP Q WYAPSLTSN EAGLG+W I +I LL+ GASHRG VYGPMAEVVY+SLQYL+D Sbjct: 221 GLIPMQAWYAPSLTSNKEAGLGDWSIADITGLLQAGASHRGAVYGPMAEVVYDSLQYLSD 280 Query: 286 EDVRAMAVYLKSLPQKQESPPPAPKDRLVAPEKM---ELGRTLYSAQCAVCHGANGRGMP 342 +DVRAM+VYLKSLPQ+ APK + A E+ +LG +Y AQCA CHG GRG Sbjct: 281 DDVRAMSVYLKSLPQRGSDAESAPKTTMAASEQARLSKLGAKIYDAQCASCHGKTGRGKT 340 Query: 343 PAYPPLAGNPSITMASPVNPIRMVLNGGFPPGTIDNPRPHGMPPFSHILKDDEIAAVVTY 402 PA+PPLAGN SI M S VNPIRMVLNGG+ PGT NP P+GMPPF+ L DDE+AAV T+ Sbjct: 341 PAFPPLAGNQSIQMTSAVNPIRMVLNGGYAPGTAKNPEPYGMPPFAQSLSDDEVAAVTTF 400 Query: 403 IRVAWGNGGMPVAGQVVNDLR 423 IR AWGN G PV+ + N LR Sbjct: 401 IRTAWGNRGAPVSAKEANALR 421