BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1956.p         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_372159.1| hypothetical protein Bcep18194_B1401 [Burkholde...    60   1e-07
ref|YP_001115323.1| hypothetical protein Bcep1808_6155 [Burkhold...    56   2e-06

>ref|YP_372159.1| hypothetical protein Bcep18194_B1401 [Burkholderia sp. 383]
 gb|ABB11515.1| putative membrane protein [Burkholderia sp. 383]
          Length = 59

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 6/64 (9%)

Query: 6  PIPSASAGQSSGEHHDDAHSTDIDAIVQRGPGGAFAVAGLASAIVIALFFLFYFFVYLPR 65
          P P+   G S  EH        +D IV+RGP GA A+AG A+AIV+AL+F FYF V+LPR
Sbjct: 2  PSPAPHDGASDPEHER------VDEIVRRGPRGAIALAGTATAIVVALWFAFYFLVFLPR 55

Query: 66 GIVQ 69
          G++Q
Sbjct: 56 GVIQ 59


>ref|YP_001115323.1| hypothetical protein Bcep1808_6155 [Burkholderia vietnamiensis
          G4]
 ref|YP_001585719.1| hypothetical protein Bmul_5763 [Burkholderia multivorans ATCC
          17616]
 ref|YP_001941563.1| hypothetical protein BMULJ_05758 [Burkholderia multivorans ATCC
          17616]
 ref|ZP_06846270.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|ABO59068.1| hypothetical protein Bcep1808_6155 [Burkholderia vietnamiensis
          G4]
 gb|ABX19427.1| conserved hypothetical protein [Burkholderia multivorans ATCC
          17616]
 dbj|BAG47573.1| putative membrane protein [Burkholderia multivorans ATCC 17616]
 gb|EFG66107.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 5/65 (7%)

Query: 5  DPIPSASAGQSSGEHHDDAHSTDIDAIVQRGPGGAFAVAGLASAIVIALFFLFYFFVYLP 64
          D IP A   +   +  D+ H   +D IV+ GP GA A+AG+A+ IVIA++F FYF V+LP
Sbjct: 7  DGIPQAPIARRLSD--DEQH---VDDIVRMGPKGALALAGIATFIVIAMWFAFYFLVFLP 61

Query: 65 RGIVQ 69
          RG++Q
Sbjct: 62 RGVIQ 66