BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1955.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003608112.1| cytochrome C oxidase subunit I [Burkholderia... 617 e-174 ref|YP_001585717.1| cytochrome c oxidase subunit I [Burkholderia... 617 e-174 ref|YP_003603958.1| cytochrome c oxidase subunit I [Burkholderia... 594 e-167 ref|YP_001856586.1| cytochrome c oxidase subunit I [Burkholderia... 593 e-167 ref|ZP_03269726.1| cytochrome c oxidase subunit I [Burkholderia ... 591 e-166 >ref|YP_003608112.1| cytochrome C oxidase subunit I [Burkholderia sp. CCGE1002] gb|ADG18601.1| cytochrome c oxidase subunit I [Burkholderia sp. CCGE1002] Length = 544 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 339/516 (65%), Positives = 407/516 (78%), Gaps = 8/516 (1%) Query: 1 MYIRSPLHSWISNPEHYYRSVTLHGTVMAYVLPTLVAMGIGYAITEIALRQPLLGLRWAW 60 M +RSPL +W+ NPE YYRSVT HGTVMAY LPTLVAMG GYAI E+ALRQ L+GL+WAW Sbjct: 30 MLVRSPLLAWVGNPEIYYRSVTAHGTVMAYALPTLVAMGFGYAICELALRQRLIGLKWAW 89 Query: 61 LGFWLVIGGTVMAGATTAAGKSSVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALMVINL 120 F L+ G +MA A A G++S+L+TFYPPMIGS FYYLG+VLVVVGSWIWVALM +NL Sbjct: 90 AAFILLAVGALMALAPVATGRASLLFTFYPPMIGSVFYYLGIVLVVVGSWIWVALMYVNL 149 Query: 121 LAWKRVHPGQVVPLAMYGNVAGACLWAWTSMGASSEILLQILPASLGWTDTINAGLARVL 180 AW+RV+PG+ +PLAM+ NVAGA LWAWT++GA+ EIL QILP +LG TI+ GLARVL Sbjct: 150 RAWRRVNPGKPIPLAMFANVAGAYLWAWTAVGAALEILFQILPVALGLKSTIDVGLARVL 209 Query: 181 FSWTLHAIVYFWLVPAYLVFYTIFPRAIGGRLYSDTMARVSFALFLVFSMPIGIHHLFAD 240 FSWTLHAIVYFWL+PAY +YT+ PRAIGGRLYSD+MAR++F +FLVF+MPIGIHHL+ D Sbjct: 210 FSWTLHAIVYFWLIPAYTAYYTLVPRAIGGRLYSDSMARIAFVMFLVFAMPIGIHHLYTD 269 Query: 241 PQVGAGFKFVHAAMTAMVSIPTFLTVFTIVASAEIVGRLRGGKGPFGWVRALPWDQPMML 300 PQVG GFKF+H TAMVS+PT LTVFTI AS EI GRLRGG G FGW+ ALPW PMML Sbjct: 270 PQVGTGFKFIHQVFTAMVSVPTLLTVFTICASVEIAGRLRGGTGLFGWLAALPWRNPMML 329 Query: 301 AVTYAFIMLGFGGAGGLINMNYQVNETVHNTQWVTGHFHLIFAGAIVIMYFMAAYELWPQ 360 A+ ++F+MLGFGGAGGLINM+Y ++ T+HNTQW+TGHFHLIF GA+VIMYF AY+LWPQ Sbjct: 330 AIAFSFVMLGFGGAGGLINMSYHLDSTIHNTQWITGHFHLIFGGAVVIMYFAIAYDLWPQ 389 Query: 361 LRHNATPSPRLIKLQIALWFAGMMILTMPWHLVGLLGAPRRMAYYDYTHPALQPHGLLVL 420 L P LI+ Q+ LWF GM+++T PWH VGLLGAPRRMAYYDYT+PA+ P + V Sbjct: 390 LT-GRKPDEGLIRKQLWLWFIGMLVVTFPWHYVGLLGAPRRMAYYDYTNPAIAPQAIWVA 448 Query: 421 ISVVGGMVLVVSAGLFLYILASA------RTQSGPVRPFSFAVAVHPELRPPAPLNSLRL 474 +S GG+VL++S LF+YILA A RT P PF F+ VHP +R P LNS RL Sbjct: 449 VSAFGGVVLLISGALFVYILAKAQFASSRRTDEMPA-PFEFSACVHPVVRVPVALNSFRL 507 Query: 475 WVGMMIALTLVNYAYPIAQLASLPEAWVPVIPIGGQ 510 W+ +MI LT+VNY+ PIAQL LP VP + +G Q Sbjct: 508 WIALMIGLTVVNYSVPIAQLLRLPNTSVPAVAVGAQ 543 >ref|YP_001585717.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] ref|YP_001941565.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] ref|ZP_06846268.1| cytochrome c oxidase subunit I [Burkholderia sp. Ch1-1] gb|ABX19425.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] dbj|BAG47575.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] gb|EFG66105.1| cytochrome c oxidase subunit I [Burkholderia sp. Ch1-1] Length = 541 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 334/511 (65%), Positives = 408/511 (79%), Gaps = 1/511 (0%) Query: 1 MYIRSPLHSWISNPEHYYRSVTLHGTVMAYVLPTLVAMGIGYAITEIALRQPLLGLRWAW 60 MY+RSPLH+W+S PE YYRSVT HG+VMAYV PTL+AMG GYAITE++L Q L+G RWAW Sbjct: 30 MYVRSPLHAWLSAPELYYRSVTAHGSVMAYVFPTLIAMGFGYAITELSLAQRLVGKRWAW 89 Query: 61 LGFWLVIGGTVMAGATTAAGKSSVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALMVINL 120 G+WLV G+++A + G++SVLYTFYPPMIG+PFYY+GVVLVVVGSWIWVALM +NL Sbjct: 90 AGWWLVAVGSIVAMVPVSMGRASVLYTFYPPMIGNPFYYIGVVLVVVGSWIWVALMSVNL 149 Query: 121 LAWKRVHPGQVVPLAMYGNVAGACLWAWTSMGASSEILLQILPASLGWTDTINAGLARVL 180 WK+ +PG VPL M+ NVAG+ LWAWT++GA+ EIL QILP +LG TI++GLARV Sbjct: 150 HVWKKANPGTPVPLPMFANVAGSYLWAWTAVGAAIEILFQILPVALGLRSTIDSGLARVF 209 Query: 181 FSWTLHAIVYFWLVPAYLVFYTIFPRAIGGRLYSDTMARVSFALFLVFSMPIGIHHLFAD 240 FSWTLHAIVYFWL+PAY+ +YT+ PRA+GGRLYSD MAR+SF LFLV +MPIGIHHLFAD Sbjct: 210 FSWTLHAIVYFWLMPAYIAYYTLVPRAVGGRLYSDEMARISFILFLVVAMPIGIHHLFAD 269 Query: 241 PQVGAGFKFVHAAMTAMVSIPTFLTVFTIVASAEIVGRLRGGKGPFGWVRALPWDQPMML 300 PQVG+GFKF+ + TA+V++PT LTVFTI AS EI GRLRGGKG FGW+RALPW +PMML Sbjct: 270 PQVGSGFKFLQSVFTALVAVPTLLTVFTICASVEIAGRLRGGKGAFGWIRALPWHEPMML 329 Query: 301 AVTYAFIMLGFGGAGGLINMNYQVNETVHNTQWVTGHFHLIFAGAIVIMYFMAAYELWPQ 360 AV ++F+MLGFGGAGGLINM+YQ++ T+HNTQW+TGHFHLIF GAIVIMYF AYELWPQ Sbjct: 330 AVAFSFVMLGFGGAGGLINMSYQLDSTIHNTQWITGHFHLIFGGAIVIMYFAIAYELWPQ 389 Query: 361 LRHNATPSPRLIKLQIALWFAGMMILTMPWHLVGLLGAPRRMAYYDYTHPALQPHGLLVL 420 L + S RLI+ Q+ WF GM++ T PWH G+LG PRRMA++DY+ PA+ P + V+ Sbjct: 390 LTGRSLRSVRLIRWQLWTWFVGMIVTTFPWHYAGILGMPRRMAFFDYSDPAIAPEAITVV 449 Query: 421 ISVVGGMVLVVSAGLFLYILASA-RTQSGPVRPFSFAVAVHPELRPPAPLNSLRLWVGMM 479 +S VG ++LV SA LF +LA R P R F F+VAVHP P LNS LW+ +M Sbjct: 450 LSFVGALILVASAVLFFIVLARGHRGAIEPARRFEFSVAVHPPRTLPVALNSFGLWIALM 509 Query: 480 IALTLVNYAYPIAQLASLPEAWVPVIPIGGQ 510 I LT+VNY YPIAQL +LP+ VP + IGGQ Sbjct: 510 IGLTVVNYGYPIAQLLALPQTSVPAVWIGGQ 540 >ref|YP_003603958.1| cytochrome c oxidase subunit I [Burkholderia sp. CCGE1002] gb|ADG14447.1| cytochrome c oxidase subunit I [Burkholderia sp. CCGE1002] Length = 541 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 349/512 (68%), Positives = 409/512 (79%), Gaps = 5/512 (0%) Query: 1 MYIRSPLHSWISNPEHYYRSVTLHGTVMAYVLPTLVAMGIGYAITEIALRQPLLGLRWAW 60 M +RSPL WI +PE YYRSVT HGTVMAYV+PTL+AM GYAI E++L Q L+GL+WAW Sbjct: 30 MLVRSPLLPWIGDPELYYRSVTAHGTVMAYVMPTLIAMAFGYAIVELSLGQRLVGLKWAW 89 Query: 61 LGFWLVIGGTVMAGATTAAGKSSVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALMVINL 120 F ++ G VMA A GK+SVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALM +NL Sbjct: 90 AAFIMLGVGAVMAMVPVALGKASVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALMHVNL 149 Query: 121 LAWKRVHPGQVVPLAMYGNVAGACLWAWTSMGASSEILLQILPASLGWTDTINAGLARVL 180 WKR +PG+ VPLAM+ NVAGA LWAWT++GA+ EIL QILP +LG+ TI+AGLARVL Sbjct: 150 RIWKRANPGKPVPLAMFANVAGAYLWAWTAVGAALEILFQILPVALGFAHTIDAGLARVL 209 Query: 181 FSWTLHAIVYFWLVPAYLVFYTIFPRAIGGRLYSDTMARVSFALFLVFSMPIGIHHLFAD 240 FSWTLHAIVYFWL PAY+ FYT+ PR+IGGRLYSD+MARVSF LFLVF+MPIGIHHLF D Sbjct: 210 FSWTLHAIVYFWLFPAYIAFYTLVPRSIGGRLYSDSMARVSFILFLVFAMPIGIHHLFVD 269 Query: 241 PQVGAGFKFVHAAMTAMVSIPTFLTVFTIVASAEIVGRLRGGKGPFGWVRALPWDQPMML 300 PQVGAGFKF+HA T MVS+PT LTVFTI AS EI GRLRGGKG GW+ ALPW P+ML Sbjct: 270 PQVGAGFKFLHAVFTGMVSVPTLLTVFTICASVEIAGRLRGGKGALGWLTALPWSNPIML 329 Query: 301 AVTYAFIMLGFGGAGGLINMNYQVNETVHNTQWVTGHFHLIFAGAIVIMYFMAAYELWPQ 360 AV ++F+MLGFGGAGGLINM+YQ+N TVHNTQWVTGHFHLIF GAIVIMYF+ AYELWPQ Sbjct: 330 AVAFSFVMLGFGGAGGLINMSYQLNSTVHNTQWVTGHFHLIFGGAIVIMYFVIAYELWPQ 389 Query: 361 LRHNATPSPRLIKLQIALWFAGMMILTMPWHLVGLLGAPRRMAYYDYTHPALQPHGLLVL 420 L A S +L++ Q+ LWF GMM++T+PWH VGLLGAPRRMAYYDY +Q G+ V+ Sbjct: 390 LTGRAIGSAKLMRTQLWLWFIGMMVVTIPWHWVGLLGAPRRMAYYDYAMAGVQGQGVWVI 449 Query: 421 ISVVGGMVLVVSAGLFLYILASARTQSGPVR---PFSFAVAVHPELRPPAPLNSLRLWVG 477 +S VGG++L+VS LF+YIL A++Q GPV F FAVA HP R P LN LWV Sbjct: 450 MSAVGGLILLVSGLLFVYIL--AKSQFGPVEEPPAFRFAVAAHPVERVPVALNGFGLWVA 507 Query: 478 MMIALTLVNYAYPIAQLASLPEAWVPVIPIGG 509 +MI LT+VNY++PI QL LP+ VP + +G Sbjct: 508 LMIGLTVVNYSFPIFQLLGLPQTSVPAVVVGA 539 >ref|YP_001856586.1| cytochrome c oxidase subunit I [Burkholderia phymatum STM815] gb|ACC69540.1| cytochrome c oxidase subunit I [Burkholderia phymatum STM815] Length = 541 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 357/513 (69%), Positives = 415/513 (80%), Gaps = 5/513 (0%) Query: 1 MYIRSPLHSWISNPEHYYRSVTLHGTVMAYVLPTLVAMGIGYAITEIALRQPLLGLRWAW 60 M +RSPL WI PE YYRSVT HGTVMAYVLPTLVAM GYAI E+AL+Q L+GL+WAW Sbjct: 30 MLVRSPLLPWIGEPELYYRSVTAHGTVMAYVLPTLVAMAFGYAIVELALQQALVGLKWAW 89 Query: 61 LGFWLVIGGTVMAGATTAAGKSSVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALMVINL 120 F L++ G VMA AAG++SVL+TFYPPMIGSPFYYLGVVLVVVGSWIWVALM INL Sbjct: 90 AAFILLVVGAVMAMVPVAAGQASVLFTFYPPMIGSPFYYLGVVLVVVGSWIWVALMSINL 149 Query: 121 LAWKRVHPGQVVPLAMYGNVAGACLWAWTSMGASSEILLQILPASLGWTDTINAGLARVL 180 WKR +PG+ VPLAMY NVAGA LWAWT++GA+ EILLQILP +LG TI+AGLARVL Sbjct: 150 HVWKRANPGKPVPLAMYANVAGAYLWAWTAVGAALEILLQILPVALGLKSTIDAGLARVL 209 Query: 181 FSWTLHAIVYFWLVPAYLVFYTIFPRAIGGRLYSDTMARVSFALFLVFSMPIGIHHLFAD 240 FSWTLHAIVYFWLVP+Y+ +YT+ PRAIGGRLYSD+MARVSF LFLVF+MPIGIHHLFAD Sbjct: 210 FSWTLHAIVYFWLVPSYIAYYTLVPRAIGGRLYSDSMARVSFILFLVFAMPIGIHHLFAD 269 Query: 241 PQVGAGFKFVHAAMTAMVSIPTFLTVFTIVASAEIVGRLRGGKGPFGWVRALPWDQPMML 300 PQVG+GFKFVHA T MVS+PT LTVFTI AS EI GRLRGG G FGW++ALPWD PMML Sbjct: 270 PQVGSGFKFVHAVFTGMVSVPTLLTVFTICASVEIAGRLRGGTGAFGWLKALPWDNPMML 329 Query: 301 AVTYAFIMLGFGGAGGLINMNYQVNETVHNTQWVTGHFHLIFAGAIVIMYFMAAYELWPQ 360 + ++FIMLG GGAGGLINM+YQ+NETVHNTQWVTGHFHLIF GAIVIMYF AYELWPQ Sbjct: 330 VIAFSFIMLGLGGAGGLINMSYQLNETVHNTQWVTGHFHLIFGGAIVIMYFAIAYELWPQ 389 Query: 361 LRHNATPSPRLIKLQIALWFAGMMILTMPWHLVGLLGAPRRMAYYDYTHPALQPHGLLVL 420 L A S RL++ Q+ LWF GMM++T+PWH VGLLGAPRRMAYYDY++PA+ P + V Sbjct: 390 LTARAICSVRLVRWQLWLWFIGMMVVTLPWHYVGLLGAPRRMAYYDYSNPAIAPQAIWVA 449 Query: 421 ISVVGGMVLVVSAGLFLYILASARTQSGPV---RPFSFAVAVHPELRPPAPLNSLRLWVG 477 +S +GG+VLV+S LF+YIL A++Q G V + F F+ HP R PA LNS LWV Sbjct: 450 VSAIGGVVLVISGLLFIYIL--AKSQFGTVEQPKQFRFSAPAHPVERVPAALNSFGLWVA 507 Query: 478 MMIALTLVNYAYPIAQLASLPEAWVPVIPIGGQ 510 +MI LT+VNY+ PIAQL L + VP + +G + Sbjct: 508 LMIGLTVVNYSVPIAQLLGLQQTSVPAVSVGAR 540 >ref|ZP_03269726.1| cytochrome c oxidase subunit I [Burkholderia sp. H160] gb|EDZ98683.1| cytochrome c oxidase subunit I [Burkholderia sp. H160] Length = 541 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 347/513 (67%), Positives = 407/513 (79%), Gaps = 5/513 (0%) Query: 1 MYIRSPLHSWISNPEHYYRSVTLHGTVMAYVLPTLVAMGIGYAITEIALRQPLLGLRWAW 60 M +RSPL WI +PE YYRSVT HGTVMAYVLPTLVAMG GYAI E+AL Q L+GL+WAW Sbjct: 30 MLVRSPLLPWIGDPELYYRSVTAHGTVMAYVLPTLVAMGFGYAIVELALAQRLVGLKWAW 89 Query: 61 LGFWLVIGGTVMAGATTAAGKSSVLYTFYPPMIGSPFYYLGVVLVVVGSWIWVALMVINL 120 +++ G VMA A G++SVL+TFYPPMIGSPFYYLGVVLVVVGSWIWVALM +NL Sbjct: 90 AALIVLLVGAVMAMVPVALGQASVLFTFYPPMIGSPFYYLGVVLVVVGSWIWVALMHVNL 149 Query: 121 LAWKRVHPGQVVPLAMYGNVAGACLWAWTSMGASSEILLQILPASLGWTDTINAGLARVL 180 WKR +PG+ VPLAM+ NVAGA LWAWT++GA+ EIL QILP +LG+ TI+AGLARVL Sbjct: 150 RIWKRANPGKPVPLAMFANVAGAYLWAWTAIGAALEILFQILPVALGFAHTIDAGLARVL 209 Query: 181 FSWTLHAIVYFWLVPAYLVFYTIFPRAIGGRLYSDTMARVSFALFLVFSMPIGIHHLFAD 240 FSWTLHAIVYFWL+PAY+ +YT+ PRAIGGRLYSD+MARVSF +FLVF+MPIGIHHLF D Sbjct: 210 FSWTLHAIVYFWLIPAYIAYYTLVPRAIGGRLYSDSMARVSFIMFLVFAMPIGIHHLFVD 269 Query: 241 PQVGAGFKFVHAAMTAMVSIPTFLTVFTIVASAEIVGRLRGGKGPFGWVRALPWDQPMML 300 PQVGAGFKF+H+ T MVS+PT LTVFTI AS EI GRLRGGKG GW+ LPW PMML Sbjct: 270 PQVGAGFKFLHSVFTGMVSVPTLLTVFTICASVEIAGRLRGGKGALGWLTVLPWSNPMML 329 Query: 301 AVTYAFIMLGFGGAGGLINMNYQVNETVHNTQWVTGHFHLIFAGAIVIMYFMAAYELWPQ 360 + ++F+MLGFGGAGGLINM+YQ+N TVHNTQW+TGHFHLIF GAIVIMYF AYELWPQ Sbjct: 330 VLAFSFVMLGFGGAGGLINMSYQMNATVHNTQWITGHFHLIFGGAIVIMYFAIAYELWPQ 389 Query: 361 LRHNATPSPRLIKLQIALWFAGMMILTMPWHLVGLLGAPRRMAYYDYTHPALQPHGLLVL 420 L A S +L++ Q+ LWF GMM++T+PWH VGLLGAPRRMAYYDY +Q G V Sbjct: 390 LTGRAIVSAKLVRTQLWLWFIGMMVVTIPWHWVGLLGAPRRMAYYDYAMAGVQGQGFWVG 449 Query: 421 ISVVGGMVLVVSAGLFLYILASARTQSGPVR---PFSFAVAVHPELRPPAPLNSLRLWVG 477 +S +GG++L+VS LF+YIL A++Q GPV F FAVA HP R P LNS LWV Sbjct: 450 VSAIGGLILLVSGLLFVYIL--AKSQFGPVEEPPAFRFAVAAHPVDRVPVALNSFGLWVA 507 Query: 478 MMIALTLVNYAYPIAQLASLPEAWVPVIPIGGQ 510 +MI LT+VNY+ PI QL LP+ VP + IG Q Sbjct: 508 LMIGLTVVNYSVPIFQLLRLPQTSVPAVVIGAQ 540