BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1954.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001115326.1| cytochrome c, class I [Burkholderia vietnami... 179 2e-43 ref|YP_002490268.1| cytochrome c class I [Methylobacterium nodul... 169 1e-40 ref|YP_003069955.1| cytochrome C [Methylobacterium extorquens DM... 167 7e-40 ref|YP_003066081.1| cytochrome C [Methylobacterium extorquens DM... 167 9e-40 ref|YP_001058397.1| cytochrome c family protein [Burkholderia ps... 158 3e-37 >ref|YP_001115326.1| cytochrome c, class I [Burkholderia vietnamiensis G4] ref|YP_001585716.1| cytochrome c class I [Burkholderia multivorans ATCC 17616] ref|YP_001941566.1| cytochrome c553 [Burkholderia multivorans ATCC 17616] ref|ZP_06846267.1| cytochrome c class I [Burkholderia sp. Ch1-1] gb|ABO59071.1| cytochrome c, class I [Burkholderia vietnamiensis G4] gb|ABX19424.1| cytochrome c class I [Burkholderia multivorans ATCC 17616] dbj|BAG47576.1| cytochrome c553 [Burkholderia multivorans ATCC 17616] gb|EFG66104.1| cytochrome c class I [Burkholderia sp. Ch1-1] Length = 266 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 95/170 (55%), Positives = 120/170 (70%), Gaps = 2/170 (1%) Query: 9 AVGRGATLALACTMCHGVQGHSRSDAPGLAGQFPEVIIKQLADYRSGKRSNAVMGALART 68 ++GRGATL+L CTMCHG QG S +++P LAGQ+ V+ KQL D++SG R+NAVM +A Sbjct: 96 SIGRGATLSLRCTMCHGPQGLSFANSPNLAGQYESVVYKQLKDFQSGARTNAVMTPMATN 155 Query: 69 LSERDAADLAAYFASLPRPAQAGGLADSAVPRLVQVGDPLRNIAPCISCHGGADRKIGAP 128 LS++D DLAAY+ASLPR + G A A P +V G P+RNIAPC SCHG A+ K+GAP Sbjct: 156 LSDQDMKDLAAYYASLPR-VRVGASAVPA-PAIVATGSPMRNIAPCASCHGAAENKLGAP 213 Query: 129 WLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAIADYYA 178 WL+G P Y+ +QL F GER ND QMRNVA M DEI A A +Y+ Sbjct: 214 WLEGEPLVYIRQQLLAFAGGERHNDTSEQMRNVARNMTRDEIEAAAKFYS 263 >ref|YP_002490268.1| cytochrome c class I [Methylobacterium nodulans ORS 2060] gb|ACL63101.1| cytochrome c class I [Methylobacterium nodulans ORS 2060] Length = 270 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 92/174 (52%), Positives = 112/174 (64%) Query: 5 ATPQAVGRGATLALACTMCHGVQGHSRSDAPGLAGQFPEVIIKQLADYRSGKRSNAVMGA 64 A P+AVGRGATLA C +CHG G SR+D+P LAGQ+ I KQL D+++G R+NA+M Sbjct: 87 AAPEAVGRGATLAQQCAICHGPTGVSRADSPNLAGQYAAAIYKQLMDFKTGARANAIMTP 146 Query: 65 LARTLSERDAADLAAYFASLPRPAQAGGLADSAVPRLVQVGDPLRNIAPCISCHGGADRK 124 A LS+RD +DLAAY+A LPR D PR+V G PLRNIAPC SCHG D K Sbjct: 147 FAVNLSDRDMSDLAAYYAYLPRLPGFHPDRDKPAPRIVINGAPLRNIAPCGSCHGALDNK 206 Query: 125 IGAPWLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAIADYYA 178 G+PWL+G P Y+ QL F G R ND QMRN+A M +EI A +YA Sbjct: 207 TGSPWLEGQPAAYVKAQLQAFASGARRNDISQQMRNIARRMTREEIDQAAQWYA 260 >ref|YP_003069955.1| cytochrome C [Methylobacterium extorquens DM4] emb|CAX26130.1| putative cytochrome c [Methylobacterium extorquens DM4] Length = 270 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 94/174 (54%), Positives = 112/174 (64%) Query: 5 ATPQAVGRGATLALACTMCHGVQGHSRSDAPGLAGQFPEVIIKQLADYRSGKRSNAVMGA 64 A P AVGRGATLA C +CHG G SR+D+P LAGQ+ + KQLAD+++G R NA M Sbjct: 87 ADPDAVGRGATLAQQCAICHGPTGVSRADSPNLAGQYAPAVYKQLADFKAGVRVNATMTP 146 Query: 65 LARTLSERDAADLAAYFASLPRPAQAGGLADSAVPRLVQVGDPLRNIAPCISCHGGADRK 124 A LS+RD ADLAAY+A LPR +D PR+V G PLRNIAPC SCHG D K Sbjct: 147 FAVDLSDRDMADLAAYYAYLPRLPGFHPASDKPPPRIVINGAPLRNIAPCGSCHGVLDNK 206 Query: 125 IGAPWLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAIADYYA 178 G+PWL+G P Y+ QL F G R ND QMRNVA M +EI A++YA Sbjct: 207 TGSPWLEGQPAAYVKAQLQAFASGARRNDISQQMRNVARRMTPEEIDQAAEWYA 260 >ref|YP_003066081.1| cytochrome C [Methylobacterium extorquens DM4] emb|CAX22025.1| putative cytochrome c [Methylobacterium extorquens DM4] Length = 270 Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 94/174 (54%), Positives = 112/174 (64%) Query: 5 ATPQAVGRGATLALACTMCHGVQGHSRSDAPGLAGQFPEVIIKQLADYRSGKRSNAVMGA 64 A P AVGRGATLA C +CHG G SR+D+P LAGQ+ + KQLAD+++G R NA M Sbjct: 87 ADPDAVGRGATLAQQCAICHGPTGVSRADSPNLAGQYAPAVYKQLADFKAGVRVNATMTP 146 Query: 65 LARTLSERDAADLAAYFASLPRPAQAGGLADSAVPRLVQVGDPLRNIAPCISCHGGADRK 124 A LS+RD ADLAAY+A LPR +D PR+V G PLRNIAPC SCHG D K Sbjct: 147 FAVDLSDRDMADLAAYYAYLPRLPGFHPASDKPPPRIVINGAPLRNIAPCGSCHGVLDNK 206 Query: 125 IGAPWLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAIADYYA 178 G+PWL+G P Y+ QL F G R ND QMRNVA M +EI A++YA Sbjct: 207 TGSPWLEGQPAAYVKAQLQAFASGARRNDISQQMRNVARRMTPEEIDQAAEWYA 260 >ref|YP_001058397.1| cytochrome c family protein [Burkholderia pseudomallei 668] ref|YP_002896090.1| cytochrome c family protein [Burkholderia pseudomallei MSHR346] ref|ZP_04886909.1| cytochrome c family protein [Burkholderia pseudomallei 1655] gb|ABN84274.1| cytochrome c family protein [Burkholderia pseudomallei 668] gb|EDU07893.1| cytochrome c family protein [Burkholderia pseudomallei 1655] gb|ACQ96652.1| cytochrome c family protein [Burkholderia pseudomallei MSHR346] Length = 262 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 85/165 (51%), Positives = 109/165 (66%), Gaps = 3/165 (1%) Query: 1 MSRPATPQAVGRGATLALACTMCHGVQGHSRSDAPGLAGQFPEVIIKQLADYRSGKRSNA 60 M A ++GRGATLA+ CTMCHG +G S +++P LAGQ+ VI KQL D+++G R+NA Sbjct: 85 MMAGADSLSIGRGATLAMRCTMCHGARGMSDANSPNLAGQYAAVIYKQLKDFQTGARTNA 144 Query: 61 VMGALARTLSERDAADLAAYFASLPRPAQAGGLADSAVPRLVQVGDPLRNIAPCISCHGG 120 VM + LS++D DLAA+++ LPR A A +A PR+V G P+RNIAPC SCHGG Sbjct: 145 VMAPMVVNLSDQDMRDLAAFYSYLPRTATALAVAP---PRIVASGAPMRNIAPCASCHGG 201 Query: 121 ADRKIGAPWLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAM 165 D K+G P L+G P Y+ QL F G R ND QMRNVA M Sbjct: 202 MDNKVGGPRLEGEPEIYINAQLQAFASGARHNDISEQMRNVARQM 246