BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1953.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003768513.1| LysR family transcriptional regulator [Amyco... 99 3e-19 ref|YP_833357.1| LysR family transcriptional regulator [Arthroba... 97 2e-18 ref|YP_002489715.1| LysR family transcriptional regulator [Arthr... 96 3e-18 ref|YP_949381.1| LysR family transcriptional regulator [Arthroba... 96 3e-18 ref|YP_004242965.1| LysR family transcriptional regulator [Arthr... 92 4e-17 >ref|YP_003768513.1| LysR family transcriptional regulator [Amycolatopsis mediterranei U32] gb|ADJ48111.1| LysR family transcriptional regulator [Amycolatopsis mediterranei U32] gb|AEK45012.1| LysR family transcriptional regulator [Amycolatopsis mediterranei S699] Length = 277 Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 5/188 (2%) Query: 1 MVDIANRIRYQFSNTTLDGLVRFGFTQGFSLPMLFALLSELRRVQPRLEVRCETGRTSQL 60 +VD R F L G VRFG ++ F+L L +L LRR P ++V + L Sbjct: 72 VVDTEERAERHFRGAELRGRVRFGVSEDFALGELPEILHRLRRSHPLVDVELTVELSDVL 131 Query: 61 LAKLEAGGLDVVLGAQADGNAQGEVMRRERLVWVGDLHHLVRPGMTIPLVVLPAPTFIRE 120 +L +G LD+VLG + G G ++ RE LVW+G L+ PG +PLV P P+ R+ Sbjct: 132 TRRLRSGQLDLVLGKRRPGAHHGRLLWREPLVWIGSAATLLEPGRPVPLVQYPMPSITRQ 191 Query: 121 HIFDTLSSAGHKWTVHFESDDPASLRTAIRSGWGISLFNEETVLGDFTLPHAMETTLLPF 180 + L AG +W ++ LR A +G G++L + D +E LP Sbjct: 192 LAVECLERAGLEWRAACQTSSLTGLRAAAAAGLGVTLHARSLIPADL-----IELDGLPE 246 Query: 181 PGHVEFFM 188 PG +EF + Sbjct: 247 PGDIEFML 254 >ref|YP_833357.1| LysR family transcriptional regulator [Arthrobacter sp. FB24] gb|ABK05257.1| transcriptional regulator, LysR family [Arthrobacter sp. FB24] Length = 284 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 4/206 (1%) Query: 9 RYQFSNTTLDGLVRFGFTQGFSLPMLFALLSELRRVQPRLEVRCETGRTSQLLAKLEAGG 68 RY FS + + G +RFG ++ L +L E R++ P++ + G++ QL KL AG Sbjct: 81 RY-FSGSAMRGRLRFGTADDLAITGLPRILREFRQIYPQINLELTVGQSDQLYRKLNAGQ 139 Query: 69 LDVVLGAQADGNAQGEVMRRERLVWVGDLHHLVRPGMTIPLVVLPAPTFIREHIFDTLSS 128 LD+V G G V++ + WVG ++ PG +PL+ P+P+ R+ D L S Sbjct: 140 LDLVFVKWVAGAKDGTVVQHDAFAWVGLEQTVLEPGDPVPLIAYPSPSLSRKLAIDALES 199 Query: 129 AGHKWTVHFESDDPASLRTAIRSGWGISLFNEETVLGDFTLPHAMETTLLPFPGHVEFFM 188 G W + + + + A+R+G G+++ V D + LP G V+F + Sbjct: 200 RGRTWRITCTTRQISGVLAAVRAGIGVAVMPSSLVPDDLKI--ITRRFDLPPVGDVDFTL 257 Query: 189 RYNPLRNDALIRSFA-TVLRKVLNRP 213 NPL N +I + ++ + L RP Sbjct: 258 IRNPLANAEVIDALTQAIVGRTLKRP 283 >ref|YP_002489715.1| LysR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gb|ACL41626.1| transcriptional regulator, LysR family [Arthrobacter chlorophenolicus A6] Length = 288 Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Query: 9 RYQFSNTTLDGLVRFGFTQGFSLPMLFALLSELRRVQPRLEVRCETGRTSQLLAKLEAGG 68 RY FS + + G +RFG ++ L +L E R++ P++ + G++ QL KL AG Sbjct: 85 RY-FSGSAMRGRLRFGTADDLAITGLPRILREFRQIYPQINLELTVGQSDQLYRKLNAGQ 143 Query: 69 LDVVLGAQADGNAQGEVMRRERLVWVGDLHHLVRPGMTIPLVVLPAPTFIREHIFDTLSS 128 LD+V G G V++ + WVG + PG +PL+ P+P+ R+ D L + Sbjct: 144 LDLVFVKWVAGAKDGTVVQHDSFSWVGLEQTSLEPGAPVPLIAYPSPSLSRKLAIDALEA 203 Query: 129 AGHKWTVHFESDDPASLRTAIRSGWGISLFNEETVLGDFTLPHAMETTLLPFPGHVEFFM 188 G W + + + + A+R+G G+++ V D + LP G V+F + Sbjct: 204 HGRTWRITCTTRQISGVLAAVRAGIGVAVMPSSLVPEDLKI--ITRRFDLPAVGDVDFTL 261 Query: 189 RYNPLRNDALIRSFA-TVLRKVLNR 212 NPL N +I + +++ +++NR Sbjct: 262 IRNPLANAEVIDALTQSIVGRIINR 286 >ref|YP_949381.1| LysR family transcriptional regulator [Arthrobacter aurescens TC1] gb|ABM07607.1| putative transcriptional regulator, LysR family [Arthrobacter aurescens TC1] Length = 284 Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 3/198 (1%) Query: 9 RYQFSNTTLDGLVRFGFTQGFSLPMLFALLSELRRVQPRLEVRCETGRTSQLLAKLEAGG 68 RY FS + + G +RFG ++ L +L E R++ P++ + ++ QL +L AG Sbjct: 81 RY-FSGSAMRGRLRFGTADDLAITGLPRILREFRQLYPQINLELTVSQSDQLYKRLNAGQ 139 Query: 69 LDVVLGAQADGNAQGEVMRRERLVWVGDLHHLVRPGMTIPLVVLPAPTFIREHIFDTLSS 128 LD+V G +G V+R + WVG ++ PG +PL+ PAP+ R+ D L + Sbjct: 140 LDLVFVKWVAGAKEGTVVRHDNFAWVGVEQTVLEPGAPVPLIAYPAPSLSRKLAIDALEA 199 Query: 129 AGHKWTVHFESDDPASLRTAIRSGWGISLFNEETVLGDFTLPHAMETTLLPFPGHVEFFM 188 G W + + + + A+R+G G+++ V D + + LP G V+F + Sbjct: 200 EGRTWRITCSTKQISGVLAAVRAGIGVAVMPASLVPEDLKV--ITQRFGLPPVGDVDFTL 257 Query: 189 RYNPLRNDALIRSFATVL 206 NPL N +I + + Sbjct: 258 IRNPLANAEVIDALTQAI 275 >ref|YP_004242965.1| LysR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gb|ADX74831.1| transcriptional regulator, LysR family [Arthrobacter phenanthrenivorans Sphe3] Length = 284 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%) Query: 9 RYQFSNTTLDGLVRFGFTQGFSLPMLFALLSELRRVQPRLEVRCETGRTSQLLAKLEAGG 68 RY FS + + G +RFG ++ L +L E R++ P++ + G++ QL KL AG Sbjct: 81 RY-FSGSAMRGRLRFGTADDLAITGLPRILREFRQIYPQINLELTVGQSDQLYKKLNAGQ 139 Query: 69 LDVVLGAQADGNAQGEVMRRERLVWVGDLHHLVRPGMTIPLVVLPAPTFIREHIFDTLSS 128 LD+V G G V++ + WVG + P +PL+ P+P+ R+ D L + Sbjct: 140 LDLVFVKWVAGAKDGTVVQHDSFSWVGLEQTTLDPAAPVPLIAYPSPSLSRKLAIDALEA 199 Query: 129 AGHKWTVHFESDDPASLRTAIRSGWGISLFNEETVLGDFTLPHAMETTLLPFPGHVEFFM 188 G W + + + + A+R+G G+++ V D + LP G V+F + Sbjct: 200 HGRTWRITCTTRQISGVLAAVRAGIGVAVMPSSLVPEDLKI--ITRRFDLPPVGDVDFTL 257 Query: 189 RYNPLRNDALIRSFA-TVLRKVLNR 212 NPL N +I + +++ + +NR Sbjct: 258 IRNPLANAEVIDALTQSIVGRTINR 282