BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1948.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003768513.1| LysR family transcriptional regulator [Amyco... 147 2e-33 ref|YP_003447534.1| lysR-like transcriptional regulator [Azospir... 140 3e-31 ref|YP_001979939.1| transcriptional regulator protein, LysR fami... 139 5e-31 gb|ABY59060.1| putative LysR family transcriptional regulator [M... 138 9e-31 ref|YP_471052.1| LysR family transcriptional regulator [Rhizobiu... 138 1e-30 >ref|YP_003768513.1| LysR family transcriptional regulator [Amycolatopsis mediterranei U32] gb|ADJ48111.1| LysR family transcriptional regulator [Amycolatopsis mediterranei U32] gb|AEK45012.1| LysR family transcriptional regulator [Amycolatopsis mediterranei S699] Length = 277 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 4 FVYLSEEGTFTGAAERMNLTQQAISAQMKRLEELTGRTLVKRSHHKVELTHDGDALLIAA 63 F+ ++E +FT AA R+ + Q +S ++RLE +G L R H VELT G A+L A Sbjct: 10 FLAVAETRSFTAAARRLGVGQPTVSQHVRRLERDSGGLLFARDTHTVELTARGQAMLAFA 69 Query: 64 RQVVDLADRLRRQFSSMPLEGVVRLGFNPGIAPSLLFPLMSELRRTHPRLEVRCQTAPSE 123 + VVD +R R F L G VR G + A L ++ LRR+HP ++V S+ Sbjct: 70 QTVVDTEERAERHFRGAELRGRVRFGVSEDFALGELPEILHRLRRSHPLVDVELTVELSD 129 Query: 124 QLVARLQSGNLDIVLGAQRAGDLRGEVLRKERLVWVGDVDNLVKEDAPIPLVMLPAPAFI 183 L RL+SG LD+VLG +R G G +L +E LVW+G L++ P+PLV P P+ Sbjct: 130 VLTRRLRSGQLDLVLGKRRPGAHHGRLLWREPLVWIGSAATLLEPGRPVPLVQYPMPSIT 189 Query: 184 REHIFDILGKAGLHWTVHTECDDATTMRAAILAGWGISLFNEETIADEPGFPQHAHTRKL 243 R+ + L +AGL W + T +RAA AG G++L I + L Sbjct: 190 RQLAVECLERAGLEWRAACQTSSLTGLRAAAAAGLGVTLHARSLIPAD-----LIELDGL 244 Query: 244 PDPGHIEFFL 253 P+PG IEF L Sbjct: 245 PEPGDIEFML 254 >ref|YP_003447534.1| lysR-like transcriptional regulator [Azospirillum sp. B510] dbj|BAI70990.1| lysR-like transcriptional regulator [Azospirillum sp. B510] Length = 297 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 135/264 (51%), Gaps = 3/264 (1%) Query: 1 MHMFVYLSEEGTFTGAAERMNLTQQAISAQMKRLEELTGRTLVKRSHHKVELTHDGDALL 60 + FV ++E G FT AA+R+ TQ AIS ++K+LEE GR + +R+ + LTHDG+ L+ Sbjct: 11 LRAFVTVAEAGGFTAAADRLGRTQSAISVKIKKLEETLGRRVFERTSRSLALTHDGELLM 70 Query: 61 IAARQVVDLADRLRRQFSSMPLEGVVRLGFNPGIAPSLLFPLMSELRRTHPRLEVRCQTA 120 AR+++DL D R+F+ EG +RLG L ++ + HPRL + + Sbjct: 71 GYARRLLDLNDETVRRFAEPAAEGELRLGVADYFLADHLPHVLRRFAKLHPRLHIDVRVG 130 Query: 121 PSEQLVARLQSGNLDIVLGAQRAGDLRGEVLRKERLVWVGDVDNLVKEDAPIPLVMLPAP 180 +LV+ L G LD+ + + GD RG E L WV + D+P+P LPAP Sbjct: 131 LCGELVSALDGGELDLAISRRDTGDGRGRGFWSEPLRWVAAPGLEIPADSPLPFCALPAP 190 Query: 181 AFIREHIFDILGKAGLHWTVHTECDDATTMRAAILAGWGISLFNEETIADEPGFPQHAHT 240 R LG+AG W V ++AA+ AG G+++ +E +I D G + Sbjct: 191 CVFRNRGLAALGEAGRSWRVVYTSGSVLGVQAAVRAGLGVAVLSESSIPD--GMRRLGPE 248 Query: 241 RKLPDPGHIEFFLNFATGNRNESI 264 LP+ G ++ + F RN + Sbjct: 249 DGLPELGDVDMAI-FGETPRNRHL 271 >ref|YP_001979939.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gb|ACE92761.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gb|EGE56772.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 284 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 3/253 (1%) Query: 1 MHMFVYLSEEGTFTGAAERMNLTQQAISAQMKRLEELTGRTLVKRSHHKVELTHDGDALL 60 + FV + + G+FT AAER+ L Q +S ++RLE GR L+ R HKV LT DG+ALL Sbjct: 7 LRSFVAVEQMGSFTLAAERLGLGQSTVSQHIQRLEATLGRKLLARDTHKVMLTGDGEALL 66 Query: 61 IAARQVVDLADRLRRQFSSMPLEGVVRLGFNPGIAPSLLFPLMSELRRTHPRLEVRCQTA 120 AR ++ + +++ F S L G +RLG + S L + + R+HP +++ A Sbjct: 67 THARAMLSIEGQVQSLFKSNSLRGSLRLGVSEDFVTSQLPAALEDFVRSHPSVDLELTVA 126 Query: 121 PSEQLVARLQSGNLDIVLGAQRAGDLRGEVLRKERLVWVGDVDNLVKEDAPIPLVMLPAP 180 S L +G++D+VL +R GD RG+++ +E LVW+ V P+PL+ P P Sbjct: 127 LSGVLYEMQDNGDIDLVLAKRRLGDARGKLVYREPLVWLARDPERVLASGPLPLIAFPPP 186 Query: 181 AFIREHIFDILGKAGLHWTVHTECDDATTMRAAILAGWGISLFNEETIADEPGFPQHAHT 240 + R + LG+ G+ W + C + + AA AG G+ L ++A P + Sbjct: 187 SVTRAIALEALGRNGVSWRIVCTCGSLSGLTAAARAGMGV-LVQPRSMA--PSGLKEIAA 243 Query: 241 RKLPDPGHIEFFL 253 KLP +EF L Sbjct: 244 GKLPALEDVEFVL 256 >gb|ABY59060.1| putative LysR family transcriptional regulator [Mesorhizobium sp. F28] Length = 361 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 111/200 (55%) Query: 1 MHMFVYLSEEGTFTGAAERMNLTQQAISAQMKRLEELTGRTLVKRSHHKVELTHDGDALL 60 + FV ++E G F+ AAER+N TQ +S Q+KRLE RT + R+ + LT DG+ L+ Sbjct: 63 LRTFVMVAECGGFSRAAERLNSTQSTVSHQIKRLESQAARTFLNRTTRSLSLTEDGEVLI 122 Query: 61 IAARQVVDLADRLRRQFSSMPLEGVVRLGFNPGIAPSLLFPLMSELRRTHPRLEVRCQTA 120 AR+ + LAD ++ F+S L+G VRL + A L ++ +R HP + + Sbjct: 123 DYARKFLRLADDAKQHFNSPRLKGHVRLAASDDFATYSLPEILGRFKRVHPEVRLTVDVG 182 Query: 121 PSEQLVARLQSGNLDIVLGAQRAGDLRGEVLRKERLVWVGDVDNLVKEDAPIPLVMLPAP 180 S LV+RL G D+VLG + G+ GE++ +E+LVWV D ++ P+PL + P P Sbjct: 183 LSGNLVSRLDEGEFDLVLGKRSLGETDGELVSREKLVWVAAPDIVINPHQPLPLAVYPKP 242 Query: 181 AFIREHIFDILGKAGLHWTV 200 R ++L AG W V Sbjct: 243 CLYRSTAIEVLNAAGRSWNV 262 >ref|YP_471052.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gb|ABC92325.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 295 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 3/253 (1%) Query: 1 MHMFVYLSEEGTFTGAAERMNLTQQAISAQMKRLEELTGRTLVKRSHHKVELTHDGDALL 60 + FV + + G+FT AAER+ L+Q +S ++RLE GR L+ R HKV LT DG+ALL Sbjct: 18 LRSFVAIEQTGSFTLAAERLGLSQSTVSQHIQRLEAALGRKLLARDTHKVLLTGDGEALL 77 Query: 61 IAARQVVDLADRLRRQFSSMPLEGVVRLGFNPGIAPSLLFPLMSELRRTHPRLEVRCQTA 120 AR ++ +A ++ F S L G +RLG + S L ++ + R+HP +++ A Sbjct: 78 SHARAMLSIAGQVHALFKSNSLRGSLRLGVSEDFVTSQLPAVLEDFVRSHPSVDLELTVA 137 Query: 121 PSEQLVARLQSGNLDIVLGAQRAGDLRGEVLRKERLVWVGDVDNLVKEDAPIPLVMLPAP 180 S L + +D+VL +R GD RG+++ +E LVW+ V P+PL+ P P Sbjct: 138 LSGVLYEMQDNDEIDLVLAKRRLGDARGKLVYREPLVWLARDPERVLASGPLPLIAFPPP 197 Query: 181 AFIREHIFDILGKAGLHWTVHTECDDATTMRAAILAGWGISLFNEETIADEPGFPQHAHT 240 + R + LG+ G+ W + C + + AA AG G+ L ++A P + Sbjct: 198 SVTRAIALETLGRNGVPWRIVCTCGSLSGLTAAARAGMGV-LVQPRSMA--PSGLKEIAA 254 Query: 241 RKLPDPGHIEFFL 253 KLP +EF L Sbjct: 255 GKLPVLEDVEFVL 267