BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1939.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774905.1| NADPH:quinone oxidoreductase [Herbaspirillum... 313 2e-83 ref|YP_002536431.1| alcohol dehydrogenase GroES domain protein [... 169 4e-40 ref|YP_305205.1| NADPH:quinone reductase [Methanosarcina barkeri... 169 6e-40 ref|YP_003589866.1| alcohol dehydrogenase zinc-binding domain-co... 167 2e-39 ref|YP_001761333.1| alcohol dehydrogenase [Shewanella woodyi ATC... 167 3e-39 >ref|YP_003774905.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ62997.1| NADPH:quinone oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 182/308 (59%), Positives = 227/308 (73%), Gaps = 4/308 (1%) Query: 4 QAIRYHQYGPPDVMALEAIAQFPLEPGQVRVSLRAAGVAPLDAKLRAGLLQAQLALTLPK 63 +AI YHQYGPP V+ L + + PL PG VRV+++AAGVAP+D KLRAG LQ +AL LPK Sbjct: 2 RAICYHQYGPPSVLHLCDLDEQPLPPGHVRVAMQAAGVAPVDTKLRAGRLQHLVALDLPK 61 Query: 64 VPGRDGAGVIVESRAEG---LPVGEPVCVMADMFGQGSYADSIVVPAARVVRQPSTLSTR 120 VPGRDGAGVI + EG L VGE VCVM M G+G+ +V+P +VVR+P LS + Sbjct: 62 VPGRDGAGVIT-ALGEGVHTLQVGEAVCVMPSMAGRGTTLAELVLPQEQVVRKPDVLSMQ 120 Query: 121 QAAALLQPGASAWIPIVRTAQVRSGMKVLVHAGSGAVGSLMIQLAAHLGAEVWATCSSAN 180 QAAALLQP SAWI +++TA + +GMKV +HAGSGAVGSLM+QLAAHLGAEV A+C S+N Sbjct: 121 QAAALLQPACSAWIALMQTAPIAAGMKVFIHAGSGAVGSLMVQLAAHLGAEVTASCRSSN 180 Query: 181 RDDVLALGATGVIAYDKEDFSALRGVDVVFDLVGGDTHDRSYPVLKPGGQLVWLVAAPIR 240 + V ALGA+ V+AYD+++ +R DVV DLVGG HD+SY +L+ GGQLVWLVAAPIR Sbjct: 181 VEYVAALGASRVLAYDRDELGRVRDQDVVIDLVGGAAHDQSYRMLRRGGQLVWLVAAPIR 240 Query: 241 ERGEEFKVRVVRAMIDDAPECLHAVAKLAEERVWVPTVGQCFPLAEAARAHALLESGKAA 300 ERGEEF V V RA+I + L VA LA++ VW P V P+ E ARAH +E+G+ Sbjct: 241 ERGEEFGVSVRRALIVEDQSILQQVAALAQQGVWRPAVSGVLPMQEIARAHQRIEAGEVT 300 Query: 301 RGRIVLDI 308 RGR+VLDI Sbjct: 301 RGRLVLDI 308 >ref|YP_002536431.1| alcohol dehydrogenase GroES domain protein [Geobacter sp. FRC-32] gb|ACM19330.1| Alcohol dehydrogenase GroES domain protein [Geobacter sp. FRC-32] Length = 311 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 170/309 (55%), Gaps = 5/309 (1%) Query: 4 QAIRYHQYGPPDVMALEAIAQFPLEPGQVRVSLRAAGVAPLDAKLRAGLLQAQLALTLPK 63 +A+ +YG P+V+ L + + + V + + AA V P+D K+R G LQ L P Sbjct: 2 KAVAIEKYGGPEVLQLMDLPKPAVTKRDVLIEIHAASVNPVDWKIREGYLQDMLHHRFPL 61 Query: 64 VPGRDGAGVIVESRAE--GLPVGEPVCVMADMFGQGSYADSIVVPAARVVRQPSTLSTRQ 121 + G D AGV+V++ E G+ V D+ G+YA+ + V V +P+ +S Sbjct: 62 ILGWDAAGVVVDTGPEVTKFKRGDKVFSRTDIARNGTYAEYVAVDEKYVAMKPANISFEG 121 Query: 122 AAALLQPGASAWIPIVRTAQVRSGMKVLVHAGSGAVGSLMIQLAAHLGAEVWATCSSANR 181 AAA+ G +AW +V A+++ KVL+HAGSG VGS IQLA G V ATCSSA+ Sbjct: 122 AAAVPLVGLTAWQALVDFARMKKDDKVLIHAGSGGVGSFAIQLAKSKGCYVAATCSSAHV 181 Query: 182 DDVLALGATGVIAYDKEDFS-ALRGVDVVFDLVGGDTHDRSYPVLKPG-GQLVWLVAAPI 239 D V +LGA ++ Y K DFS L D+VFD +GG+T+ +S+ VL+ G +V ++ P Sbjct: 182 DFVRSLGADQIVDYTKGDFSLQLHDYDIVFDTIGGETYRKSFKVLRQQHGAMVSILEQPD 241 Query: 240 RERGEEFKVRVVRAMIDDAPECLHAVAKLAEERVWVPTVGQCFPLAEAARAHALLESGKA 299 E E+ VRV + + L +A+L E P VG+ PL EA A L +S Sbjct: 242 HELAEQTGVRVGYLFMHPDGKELGKIAELVEAGDIKPVVGKILPLEEARNAQMLSQS-HH 300 Query: 300 ARGRIVLDI 308 ARG+IVL + Sbjct: 301 ARGKIVLQV 309 >ref|YP_305205.1| NADPH:quinone reductase [Methanosarcina barkeri str. Fusaro] gb|AAZ70625.1| NADPH:quinone reductase [Methanosarcina barkeri str. Fusaro] Length = 308 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 15/311 (4%) Query: 4 QAIRYHQYGPPDVMALEAIAQFPLEPGQVRVSLRAAGVAPLDAKLRAGLLQAQLALTLPK 63 +AIR H +G PDV+ E I + PG+VR+ AAGV P+D K+R G ++ L LP Sbjct: 2 KAIRIHDFGEPDVLKYEDIPESQPGPGEVRIRAIAAGVNPIDWKIRRGYME----LPLPM 57 Query: 64 VPGRDGAGVIVESRAEGLPVGEPVCVMADMFG-----QGSYADSIVVPAARVVRQPSTLS 118 G D AGV V++ +G+ +P ++FG QG YA+ IVV + ++ ++P ++ Sbjct: 58 TMGSDVAGV-VDAIGQGVDSFQP---EDEVFGKASAGQGGYAEYIVVNSTQIAQKPKSIG 113 Query: 119 TRQAAALLQPGASAWIPIVRTAQVRSGMKVLVHAGSGAVGSLMIQLAAHLGAEVWATCSS 178 ++AA+ G +AW + A + G VL+H SG VG+ +Q A GA V T SS Sbjct: 114 FIESAAIPTAGLAAWQSLFDIAGLEKGQSVLIHGASGGVGTFAVQFAKWKGAYVIGTASS 173 Query: 179 ANRDDVLALGATGVIAYDKEDFSAL-RGVDVVFDLVGGDTHDRSYPVLKPGGQLVWLVAA 237 N + + ++G VI Y + F + +DVV D +GGDT +RS+ VLKPGG LV VA+ Sbjct: 174 KNAEFLKSIGCDEVIDYRNQQFEEIVSNLDVVLDTIGGDTFERSWGVLKPGGFLVTTVAS 233 Query: 238 PIRERGEEFKVRVVRAMIDDAPECLHAVAKLAEERVWVPTVGQCFPLAEAARAHALLESG 297 ++ VR R + + L +A + +ER P V PLA+A +AH + ESG Sbjct: 234 IPEGTPQKHGVRAERLITQADGKELAQIAAIIDERKIKPIVTTVLPLADAQKAHEMSESG 293 Query: 298 KAARGRIVLDI 308 RG+IVL I Sbjct: 294 H-TRGKIVLRI 303 >ref|YP_003589866.1| alcohol dehydrogenase zinc-binding domain-containing protein [Bacillus tusciae DSM 2912] gb|ADG06722.1| Alcohol dehydrogenase zinc-binding domain protein [Bacillus tusciae DSM 2912] Length = 309 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 168/308 (54%), Gaps = 4/308 (1%) Query: 4 QAIRYHQYGPPDVMALEAIAQFPLEPGQVRVSLRAAGVAPLDAKLRAGLLQAQLALTLPK 63 +A+ YG P+ + + + + L V + + AA V P+D K+R G L+++L LP Sbjct: 2 KAVLIENYGGPEQLKIADVPKPELRETDVLIEVHAASVNPVDWKIRRGYLKSRLNHRLPL 61 Query: 64 VPGRDGAGVIVE--SRAEGLPVGEPVCVMADMFGQGSYADSIVVPAARVVRQPSTLSTRQ 121 + G D AG +VE S+ VG+ V D+ G+YA+ + V + V ++P+ LS + Sbjct: 62 ILGWDAAGTVVETGSKVTRFRVGDEVFTRPDIERDGTYAEYVAVDQSLVAKKPANLSFEE 121 Query: 122 AAALLQPGASAWIPIVRTAQVRSGMKVLVHAGSGAVGSLMIQLAAHLGAEVWATCSSANR 181 AA++ +A ++ A V+ G VL+HAG+G VGS IQ+A LGA+V T S+ N Sbjct: 122 AASVPLAAMTAREALIDHAGVKPGDTVLIHAGAGGVGSFAIQIARLLGAQVITTVSTRNV 181 Query: 182 DDVLALGATGVIAYDKEDFSA-LRGVDVVFDLVGGDTHDRSYPVLKPGGQLVWLVAAPIR 240 D LGA VI Y ++DF+A LR +DVV D +GG+ S VLK GG LV +V P Sbjct: 182 DFAKQLGADLVIDYTRDDFTATLRDLDVVLDTLGGEVQLLSMNVLKKGGMLVSIVMPPDL 241 Query: 241 ERGEEFKVRVVRAMIDDAPECLHAVAKLAEERVWVPTVGQCFPLAEAARAHALLESGKAA 300 E+ +R + L + K E+ P VG FPL E A+AH L ESG + Sbjct: 242 ALAEQKGIRRAYFFLQPDGNKLEEIGKWIEQGHIKPAVGAVFPLEEVAKAHELSESGH-S 300 Query: 301 RGRIVLDI 308 RG+IVL + Sbjct: 301 RGKIVLKV 308 >ref|YP_001761333.1| alcohol dehydrogenase [Shewanella woodyi ATCC 51908] gb|ACA87238.1| Alcohol dehydrogenase zinc-binding domain protein [Shewanella woodyi ATCC 51908] Length = 313 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 168/307 (54%), Gaps = 3/307 (0%) Query: 4 QAIRYHQYGPPDVMALEAIAQFPLEPGQVRVSLRAAGVAPLDAKLRAGLLQAQLALTLPK 63 +A++ +++G V+ L + +V + +++A V P+D K+R G LQ L +LP Sbjct: 6 KAVQINEFGDHSVLLLNDVVIPTPNENEVLIKVKSAAVNPVDWKIREGYLQPLLNHSLPL 65 Query: 64 VPGRDGAGVIVE--SRAEGLPVGEPVCVMADMFGQGSYADSIVVPAARVVRQPSTLSTRQ 121 G D +G +V L VG+ V D+ GSYA+ V A +PS+ + ++ Sbjct: 66 TLGWDVSGEVVAIGKNVTNLKVGDAVYSRPDIAKNGSYAEYQTVVAEEAALKPSSFTWQE 125 Query: 122 AAALLQPGASAWIPIVRTAQVRSGMKVLVHAGSGAVGSLMIQLAAHLGAEVWATCSSANR 181 AA + +AW + A++ SG +VL+HAGSGAVG IQLA GA V+ T SS N Sbjct: 126 AAGVPLAALTAWQSLYGLAKLESGDRVLIHAGSGAVGQFAIQLAKLRGAYVYTTTSSKNT 185 Query: 182 DDVLALGATGVIAYDKEDFSALRGVDVVFDLVGGDTHDRSYPVLKPGGQLVWLVAAPIRE 241 + V+ LGA I Y ++DFS L+ +DVVFD +GG+T +S+ LK GG+LV + P Sbjct: 186 ELVMGLGADQSIDYHQDDFSQLKDIDVVFDTIGGETQAKSWKTLKKGGRLVSITETPDDA 245 Query: 242 RGEEFKVRVVRAMIDDAPECLHAVAKLAEERVWVPTVGQCFPLAEAARAHALLESGKAAR 301 ++ + + E L +A+LA+ T+ F L++ A AH E+G+ A+ Sbjct: 246 IAAKYDISAFFCFVQPNGEQLKKLAELADAGQLTVTIDSEFSLSQVAEAHKRSETGR-AQ 304 Query: 302 GRIVLDI 308 G+I++++ Sbjct: 305 GKIIINV 311