BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1934.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774339.1| hypothetical protein Hsero_0914 [Herbaspiril... 261 5e-68 ref|YP_002979963.1| hypothetical protein Rpic12D_5075 [Ralstonia... 214 6e-54 ref|YP_002006666.1| hypothetical protein RALTA_A2672 [Cupriavidu... 156 2e-36 ref|YP_001165253.1| hypothetical protein RPRSA1_gp04 [Ralstonia ... 140 2e-31 ref|ZP_02892202.1| conserved hypothetical protein [Burkholderia ... 132 3e-29 >ref|YP_003774339.1| hypothetical protein Hsero_0914 [Herbaspirillum seropedicae SmR1] gb|ADJ62431.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 173/240 (72%) Query: 1 MDIKFSYRYEQSTLPDVSGQLKMLWRTAVLLDQVGVPMADWCPPADTPENSLRNKAFDDD 60 M+IKF YR +LP + LK LW+ A+LLD +G+P+ DWCPPADTP+N+ RN AFD + Sbjct: 1 MNIKFPYRSGIESLPSIYEHLKQLWQVAMLLDTIGMPLEDWCPPADTPDNARRNVAFDKN 60 Query: 61 GPSQAALAIFKEEDKDRDEKDVRSMAVWNGLLEEGSILMNHTLVVREYPSKSTFSLQSTS 120 GPS AA+AIF EE+K + R + VWNG ++G ++ H L + S+S+F L S Sbjct: 61 GPSPAAVAIFHEEEKADPSEKFRILGVWNGKEDDGGAVLLHKLSIASNHSRSSFELNSKG 120 Query: 121 VPALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAIHKVFDDRPGVGWMLFLPKVIKASQ 180 V AL +K ++Q++ LLEI+PAPFI V+ PPY H VF+D PGVGWML+LP+++ +Q Sbjct: 121 VQALEKKENIVQIINTLLEIFPAPFIQVSPPPYATRHAVFEDHPGVGWMLYLPEILTPAQ 180 Query: 181 VPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEEHIKVATSIEIRLVEQDLLPRRSEM 240 VPEA ELIPV D K+KGTIVVS+ +E FSV+N+EH+KVA +IEIRL +QDLLPR S + Sbjct: 181 VPEAPELIPVLDKDNKRKGTIVVSVPNETFSVKNKEHVKVANAIEIRLADQDLLPRFSNL 240 >ref|YP_002979963.1| hypothetical protein Rpic12D_5075 [Ralstonia pickettii 12D] gb|ACS66309.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 239 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 117/240 (48%), Positives = 156/240 (65%), Gaps = 1/240 (0%) Query: 1 MDIKFSYRYEQSTLPDVSGQLKMLWRTAVLLDQVGVPMADWCPPADTPENSLRNKAFDDD 60 M+I ++R +Q TLP QL+ LWR LL +G P+ W PPADTPENSL N+AF+D Sbjct: 1 MNITSTFRLDQQTLPTEDAQLRDLWRVGQLLIPLGYPLNAWHPPADTPENSLLNEAFNDA 60 Query: 61 GPSQAALAIFKEEDKDRDEKDVRSMAVWNGLLEEGSILMNHTLVVREYPSKSTFSLQSTS 120 GP+ AA++I + E ++++ R +VWNG+ G +L L V P + +F L S Sbjct: 61 GPTSAAVSILRAEKQEKELPGWREASVWNGIEGAGGVLFKSALTVTPKPFRCSFELSSKR 120 Query: 121 VPALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAIHKVFDDRPGVGWMLFLPKVIKASQ 180 V A K ++ +V G+L+IWPA + V Y +VF DRPGVGWML+LPKV+ Q Sbjct: 121 VDAFSRKELVLPLVLGVLDIWPAMTLEVHPYKYSTQQQVFPDRPGVGWMLYLPKVLTVQQ 180 Query: 181 VPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEEHIKVATSIEIRLVEQDLLPRRSEM 240 VPEA LIPV D KQ+GT+VVS+ DEPFS N EH+K+A IE+RLV+QDLLPR SE+ Sbjct: 181 VPEAGALIPVMDGK-KQRGTVVVSVADEPFSSDNPEHVKIANQIEVRLVDQDLLPRYSEL 239 >ref|YP_002006666.1| hypothetical protein RALTA_A2672 [Cupriavidus taiwanensis LMG 19424] emb|CAQ70605.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 241 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 143/240 (59%), Gaps = 7/240 (2%) Query: 3 IKFSYRYEQSTLPDVSGQLKMLWRTAVLLDQVGVPMADW-CPPADTPENSLRNKAFDDDG 61 ++ S+R ++ L DV QL L+ A ++ + + +W D+ E +LR AFD+ G Sbjct: 7 LELSFRRKEDGLIDVRRQLAELYEFARIVGRYSKLLDEWYLSYGDSKEEALRYHAFDETG 66 Query: 62 PSQAALAIFKEEDKDRDEKDVRSMAVWNGLLEEGSILMNHTLV-VREYPSKSTFSLQSTS 120 P+ AALA+ E+++R D+RS+A+WNG + +LV V P + SL+ Sbjct: 67 PTTAALAVL--EERNRGVTDIRSIALWNGAEKTAQQASLTSLVNVLGPPDRVALSLRIE- 123 Query: 121 VPALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAIHKVFDDRPGVGWMLFLPKVIKASQ 180 P+ + + ++ + IW P ++ P + HKVF DRPGV W+ +LP+++ Q Sbjct: 124 -PSFADWKVPLLWLEAAVAIW-RPLVASFGPFWYNEHKVFRDRPGVSWLFYLPRILSEQQ 181 Query: 181 VPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEEHIKVATSIEIRLVEQDLLPRRSEM 240 VPEA L PV + GKQ GT+VVSI+DEPFS N EH++VA +IEIRL +QDLLPR +E+ Sbjct: 182 VPEAGLLHPVLNKEGKQIGTVVVSIIDEPFSEHNPEHVRVANAIEIRLADQDLLPRYAEL 241 >ref|YP_001165253.1| hypothetical protein RPRSA1_gp04 [Ralstonia phage phiRSA1] dbj|BAF52381.1| hypothetical protein [Ralstonia phage phiRSA1] Length = 271 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 7/204 (3%) Query: 38 MADWCPPADTPENSLRNKAFDDDGPSQAALAIFKEEDKDRDEKDV-RSMAVWNGLLEEGS 96 M W + +L+ AF+DDGP+ AA A+ +E +K R++ + R++ +WNG EEG Sbjct: 74 MKKWLLGGANMDEALQYGAFEDDGPAPAAEAVLRERNKGREKPPITRTIGLWNG--EEGL 131 Query: 97 ILMNHTLVVREYPSKSTFSLQSTSVPALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAI 156 LV E S + +++S + + + +++IW F+SV YD Sbjct: 132 DGATMGLVYIEANRPSMVNFETSSA-GFLAYDHALAACRAMIDIWRPLFVSVGPDFYDP- 189 Query: 157 HKVFDDRPGVGWMLFLPKVIKASQVPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEE 216 VF DRPGVGWML+LP+ I QVPEA L+PV Q GTI+VS+ DEPF N E Sbjct: 190 --VFKDRPGVGWMLYLPQAITVQQVPEAGALMPVLGDKKHQAGTIIVSVTDEPFCDLNPE 247 Query: 217 HIKVATSIEIRLVEQDLLPRRSEM 240 H+++A IE+RL +Q LLPR +++ Sbjct: 248 HVRIANKIEVRLADQGLLPRYADL 271 >ref|ZP_02892202.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|EDT02221.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 236 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 8/237 (3%) Query: 1 MDIKFSYRYEQSTLPDVSGQLKMLWRTAVLLDQVGVPMADWCPPADTPENSLRNKAFDDD 60 MD +R T D L + + + + W ++ + +L AF+D Sbjct: 1 MDFSLQFRDASLTPTDFEQILSRIHVVTSAMGAIEPNLGTWFAQGESVDEALLYPAFEDG 60 Query: 61 GPSQAALAIFKEEDKDRDEKDVRSMAVWNGLLE--EGSILMNHTLVVREYPSKSTFSLQS 118 PS A LA+ K E + +A+WNG +G+ L H V E ++F + Sbjct: 61 QPSTALLAVLKHEFSADPSRSF--VALWNGNQNKGQGASLACH---VGENVGPNSFDAKV 115 Query: 119 TSVPALMEKSKMIQVVKGLLEIWPAPFISVTDPPYDAIHKVFDDRPGVGWMLFLPKVIKA 178 + L + Q+VK + + ++SV+ Y +VFDD+PGVGWM++LPKV+ Sbjct: 116 SDTSVLTNIESVQQIVKATVAAFNPAYVSVSPRSY-VTKQVFDDKPGVGWMIYLPKVVTQ 174 Query: 179 SQVPEAQELIPVEDSTGKQKGTIVVSIMDEPFSVQNEEHIKVATSIEIRLVEQDLLP 235 QVPEA++LIPV ++ Q GTI+VS D PFS++N EHI+ A IEIRLVEQD+LP Sbjct: 175 QQVPEARDLIPVPEAGRLQTGTIIVSTTDAPFSMKNPEHIETANRIEIRLVEQDILP 231