BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1926.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777832.1| LysR family transcription regulator protein ... 519 e-145 ref|YP_001749242.1| LysR family transcriptional regulator [Pseud... 260 2e-67 gb|EGH54916.1| regulatory protein, LysR:LysR, substrate-binding ... 258 7e-67 ref|ZP_07263715.1| regulatory protein, LysR:LysR, substrate-bind... 258 1e-66 ref|YP_002494943.1| LysR family transcriptional regulator [Methy... 258 1e-66 >ref|YP_003777832.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65924.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 259/292 (88%), Positives = 277/292 (94%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERVGRGIRLTPV 60 MDFRDLKYF VIAEEGHVGRAAERL+KTQPALTKCIDRLEEQLGAPLFER+GRGIRLT V Sbjct: 1 MDFRDLKYFTVIAEEGHVGRAAERLYKTQPALTKCIDRLEEQLGAPLFERLGRGIRLTAV 60 Query: 61 GEALLHRARRISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGICQQLLAEAEKV 120 GEALL+RAR+ISLMMDETAREIGDYAHGREGNIRLGC+PTLAEH+LPG+CQQLL EA+KV Sbjct: 61 GEALLNRARQISLMMDETAREIGDYAHGREGNIRLGCVPTLAEHVLPGVCQQLLGEAQKV 120 Query: 121 TIDLKVSMNDALLEGLKAGELDVVLGPMIQDDELFHTEEIMRDEMVVMASPNHPIFDRKI 180 TIDLKVSMNDALL GLKAGELD+VLGPMIQDDELFHTEEIM+D+MVVMASP HPIFD+KI Sbjct: 121 TIDLKVSMNDALLAGLKAGELDIVLGPMIQDDELFHTEEIMQDQMVVMASPQHPIFDKKI 180 Query: 181 RLRHLLEYQWVLPAQSVLSRQWLDNVFDRHHLSRPTVQITPTVLNMIMPLIERSNLLGFA 240 RLRHLL+YQWVLPAQSVLSRQWLDNVFDRHHL RP VQITPTVLNMI+PLIERSNLLGFA Sbjct: 181 RLRHLLDYQWVLPAQSVLSRQWLDNVFDRHHLPRPKVQITPTVLNMILPLIERSNLLGFA 240 Query: 241 SKLNLLAGRNHLREVVLKETTMLRRMGLSYRRDTYLSPAALRLIKIIRGTAL 292 SKLNL GR HLREVVLKETTMLRRMGL+YRRD YLSPAA RLI+I+ +L Sbjct: 241 SKLNLSEGRGHLREVVLKETTMLRRMGLTYRRDMYLSPAAQRLIRILHEASL 292 >ref|YP_001749242.1| LysR family transcriptional regulator [Pseudomonas putida W619] gb|ACA72873.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 300 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 137/290 (47%), Positives = 195/290 (67%), Gaps = 2/290 (0%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERVGRGIRLTPV 60 MD RDL YF IAE GH+GRAAE+L ++QPALTK I RLEE LGA LF+R GR I+LT V Sbjct: 1 MDLRDLTYFETIAELGHLGRAAEKLNRSQPALTKSIQRLEESLGARLFQRDGRRIKLTDV 60 Query: 61 GEALLHRARRISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGICQQLLAEAEKV 120 G+ L+ R R++ L + ET RE+ D+A+G GNIRLGC ++A+H+LP + LL A +V Sbjct: 61 GQLLVARGRQLQLNIAETEREVRDFANGLVGNIRLGCAASMADHLLPHLTAALLERAPEV 120 Query: 121 TIDLKVSMNDALLEGLKAGELDVVLGPMIQDDELFHTEEIMRDEMVVMASPNHPIFDRKI 180 T+ L ++ +D L E L+AG LDV++ P + DD F T I+ DE +V+AS HP+F I Sbjct: 121 TLKLSIAQDDVLKESLRAGRLDVIISPQLADDPQFTTHAILEDEAIVVASAEHPVFCGPI 180 Query: 181 RLRHLLEYQWVLPAQSVLSRQWLDNVFDRHHLSRPTVQITPTVLNMIMPLIERSNLLGFA 240 L+ L +Y+WVL +V +R+W+DN+F H L P VQ+ ++++ LI R+ LL F Sbjct: 181 ELKDLCQYRWVLAGPTVTARRWIDNLFISHQLPAPQVQVETNAISLLPRLIARTQLLSFV 240 Query: 241 SKLNLL--AGRNHLREVVLKETTMLRRMGLSYRRDTYLSPAALRLIKIIR 288 ++ L G + LREV L++TTM R + +S R D YLSPAA ++ +++ Sbjct: 241 ARETLEHGLGMSWLREVPLQQTTMRRTVAVSVRTDAYLSPAAGVMVALLK 290 >gb|EGH54916.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 300 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 137/295 (46%), Positives = 193/295 (65%), Gaps = 2/295 (0%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERVGRGIRLTPV 60 MD RDL YF IAE GH+GRAAE+L ++QPALTK I RLEE G LF+R GR I+LTPV Sbjct: 1 MDLRDLTYFETIAELGHLGRAAEKLNRSQPALTKSIQRLEESFGTRLFQRDGRRIKLTPV 60 Query: 61 GEALLHRARRISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGICQQLLAEAEKV 120 GE L R + + + +T RE+ D+A G GNIR+GC T+AE+++P + LL V Sbjct: 61 GELLQARGKELQQSIAQTQREVRDFASGMVGNIRVGCAATMAEYLMPKLTSALLQRTPDV 120 Query: 121 TIDLKVSMNDALLEGLKAGELDVVLGPMIQDDELFHTEEIMRDEMVVMASPNHPIFDRKI 180 T+ L + +D L E L++G+LD+++ + D E + I+RDE VV+AS NHPIF + Sbjct: 121 TLKLVIGQDDLLRESLRSGQLDMIICALAPDSEDVTSFAILRDEAVVVASKNHPIFKPSL 180 Query: 181 RLRHLLEYQWVLPAQSVLSRQWLDNVFDRHHLSRPTVQITPTVLNMIMPLIERSNLLGFA 240 ++ L Y+WVLP SV SR+WLD F H L PTVQI ++++ LI RSNLL F Sbjct: 181 KMSDLCAYRWVLPPVSVSSRKWLDATFAAHGLPLPTVQIEANSISLLPGLIARSNLLSFI 240 Query: 241 SKLNLLAGR--NHLREVVLKETTMLRRMGLSYRRDTYLSPAALRLIKIIRGTALD 293 ++ +L G+ HLREV L++TT+ R +G++ R+ YLSPAA +++++R D Sbjct: 241 ARESLEFGKTMQHLREVPLEQTTLKRTIGVTLRKGGYLSPAAEGMLQMLRDNGGD 295 >ref|ZP_07263715.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 300 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 138/295 (46%), Positives = 192/295 (65%), Gaps = 2/295 (0%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERVGRGIRLTPV 60 MD RDL YF IAE GH+GRAAE+L ++QPALTK I RLEE G LF+R GR I+LTPV Sbjct: 1 MDLRDLTYFETIAELGHLGRAAEKLNRSQPALTKSIQRLEESFGTRLFQRDGRRIKLTPV 60 Query: 61 GEALLHRARRISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGICQQLLAEAEKV 120 GE L R + + + +T REI D+A G GNIR+GC T+AE+++P + LL V Sbjct: 61 GELLQARGKELQQSIAQTQREIRDFASGMVGNIRVGCAATMAEYLMPKLTSALLQRTPDV 120 Query: 121 TIDLKVSMNDALLEGLKAGELDVVLGPMIQDDELFHTEEIMRDEMVVMASPNHPIFDRKI 180 T+ L + +D L E L++G+LD+++ + D E + I+RDE VV+AS NHPIF + Sbjct: 121 TLKLVIGQDDLLRESLRSGQLDMIICALAPDSEDVTSFAILRDEAVVVASKNHPIFKPSL 180 Query: 181 RLRHLLEYQWVLPAQSVLSRQWLDNVFDRHHLSRPTVQITPTVLNMIMPLIERSNLLGFA 240 ++ L Y+WVLP SV SR+WLD F H L PTVQI ++++ LI RSNLL F Sbjct: 181 KMSDLCAYRWVLPPVSVSSRKWLDATFAAHGLPLPTVQIEANSISLLPGLISRSNLLSFI 240 Query: 241 SKLNLLAGR--NHLREVVLKETTMLRRMGLSYRRDTYLSPAALRLIKIIRGTALD 293 ++ +L G+ HLREV L++TT R +G++ R+ YLSPAA +++++R D Sbjct: 241 ARESLEFGKTMQHLREVPLEQTTHKRTIGVTLRKGGYLSPAAEGMLQMLRDNGGD 295 >ref|YP_002494943.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL62451.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 318 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 138/291 (47%), Positives = 192/291 (65%), Gaps = 3/291 (1%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERVGRGIRLTPV 60 MD RDL YF VIA+ GH+GRAAERL +TQPALTKCI RLE +GA LF R RG+ LT V Sbjct: 1 MDLRDLAYFEVIADLGHLGRAAERLGRTQPALTKCIQRLEASVGAELFARSSRGLALTQV 60 Query: 61 GEALLHRARRISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGICQQLLAEAEKV 120 GE LL RARR+ MDE RE+ D+A G G++R+G T+AE++LP +C+ L+A A V Sbjct: 61 GEVLLARARRMRTAMDEALREVSDFAAGAAGHVRIGTGATMAEYLLPQVCRALIAAAPAV 120 Query: 121 TIDLKVSMNDALLEGLKAGELDVVLGPMIQDD-ELFHTEEIMRDEMVVMASPNHPIFDRK 179 T++L++ M+ L L+ +LD+++GP++ D + F D++VV+A+ HP+ R Sbjct: 121 TVELQIGMSGVLRTALRDNQLDLIIGPVLASDHDEFAHVTFGTDDVVVVAARGHPLCGRP 180 Query: 180 IRLRHLLEYQWVLPAQSVLSRQWLDNVFDRHHLSRPTVQITPTVLNMIMPLIERSNLLGF 239 + + L++++WVLPA+SV RQWLD VF H L P VQI + M+ LI ++LL F Sbjct: 181 LSIEDLVKWKWVLPAKSVAMRQWLDTVFQAHGLPGPAVQIETNSITMLPRLIGETDLLSF 240 Query: 240 ASKLNLLAGR--NHLREVVLKETTMLRRMGLSYRRDTYLSPAALRLIKIIR 288 S NLL R L + L TTM R +G YRR+ YLSPAALR++ +++ Sbjct: 241 TSTRNLLPDRLGGRLERLGLDATTMRRPLGCVYRREGYLSPAALRVVTLLQ 291