BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1919.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777842.1| transmembrane protein [Herbaspirillum serope... 335 4e-90 ref|YP_003452075.1| hypothetical protein AZL_c02380 [Azospirillu... 201 7e-50 ref|YP_003963901.1| hypothetical protein EIO_1469 [Ketogulonicig... 164 7e-39 ref|YP_001168562.1| hypothetical protein Rsph17025_2368 [Rhodoba... 164 1e-38 ref|YP_001532980.1| hypothetical protein Dshi_1637 [Dinoroseobac... 163 1e-38 >ref|YP_003777842.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65934.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 199/233 (85%), Positives = 209/233 (89%), Gaps = 3/233 (1%) Query: 1 MIGIAMTTSTADSSPSS---PIASAPPARATPPATPAVRHSWIDNLQGQLFGVVMIAFGM 57 MIGIAM+TST ++ SS PIA PA PA VRHSWIDNLQGQ FGVVM+AFGM Sbjct: 1 MIGIAMSTSTTSTAASSASRPIAPVAPAPVRGPAASPVRHSWIDNLQGQFFGVVMVAFGM 60 Query: 58 SMLHSLGLIIGQIAGVAFLVTYATGISFGMAFTLINLPFYLLAALRMGAAFTWRTLAAVT 117 SMLHSLGLIIGQIAGVAFLV+Y +GISFG+AFTLINLPFYLLAALRMGAAFTWRTLAAVT Sbjct: 61 SMLHSLGLIIGQIAGVAFLVSYGSGISFGLAFTLINLPFYLLAALRMGAAFTWRTLAAVT 120 Query: 118 AVSVLTNVAGNYISYSHLDPAVGAVLAGLCVGIGLIGLFRHQASCGGMSILATYVQERTG 177 AVS+LTN+AGNYISY HLDPAVGAVLAGLCVGIGLI LFRHQASCGGMSILA YVQERTG Sbjct: 121 AVSLLTNIAGNYISYRHLDPAVGAVLAGLCVGIGLIALFRHQASCGGMSILAAYVQERTG 180 Query: 178 FKAGWLLMGFDLALFATAALFLPMDRVFYSLVGAITMNLFVAWNHRYEWYIAR 230 FKAGWLLMGFDLALFATAA FLPM+RV YSL GAITMNLFVAWNHRYEWYIAR Sbjct: 181 FKAGWLLMGFDLALFATAAWFLPMERVLYSLAGAITMNLFVAWNHRYEWYIAR 233 >ref|YP_003452075.1| hypothetical protein AZL_c02380 [Azospirillum sp. B510] dbj|BAI75531.1| hypothetical protein AZL_c02380 [Azospirillum sp. B510] Length = 221 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 118/228 (51%), Positives = 161/228 (70%), Gaps = 9/228 (3%) Query: 4 IAMTTSTADSSPSS-PIASAPPARATPPATPAVRHSWIDNLQGQLFGVVMIAFGMSMLHS 62 I MT ++A + PSS AS+ RA HS DN+QGQLFGVVM +FG+++LH+ Sbjct: 2 IGMTNNSASTIPSSLEQASSERRRAA--------HSVFDNVQGQLFGVVMTSFGIAILHA 53 Query: 63 LGLIIGQIAGVAFLVTYATGISFGMAFTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVL 122 GL+ GQ AG+ F+++YATG+ FG+ F L+NLPFY LA R+G FT ++L AVT +SVL Sbjct: 54 AGLVTGQAAGLTFVISYATGVDFGILFFLVNLPFYFLALARIGVRFTIKSLIAVTGISVL 113 Query: 123 TNVAGNYISYSHLDPAVGAVLAGLCVGIGLIGLFRHQASCGGMSILATYVQERTGFKAGW 182 + + + +S +DP V AVLAG C+GIG+IGLFRH AS GG+ ILA Y+QE+TGF+AGW Sbjct: 114 SGLLPRMMIFSTIDPYVAAVLAGFCIGIGVIGLFRHGASGGGVGILAYYLQEKTGFRAGW 173 Query: 183 LLMGFDLALFATAALFLPMDRVFYSLVGAITMNLFVAWNHRYEWYIAR 230 L FD+A+F+ AA L + S++GA +N FVA+NHR +WY+AR Sbjct: 174 LQALFDVAVFSAAAFVLDWPALLASMLGAAVLNGFVAFNHRADWYVAR 221 >ref|YP_003963901.1| hypothetical protein EIO_1469 [Ketogulonicigenium vulgare Y25] gb|ADO42601.1| putative membrane protein [Ketogulonicigenium vulgare Y25] gb|AEM40794.1| putative transmembrane YitT family protein [Ketogulonigenium vulgarum WSH-001] Length = 224 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 94/201 (46%), Positives = 130/201 (64%) Query: 29 PPATPAVRHSWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQIAGVAFLVTYATGISFGMA 88 P + A HS D+ QG FG VM AFGM +L SLG I GQ+AG+A L++Y +G SFG+ Sbjct: 23 PMSDKASPHSLFDDAQGIAFGTVMAAFGMVILTSLGFITGQMAGLAVLISYVSGWSFGVV 82 Query: 89 FTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVLTNVAGNYISYSHLDPAVGAVLAGLCV 148 F +INLPFY + RMG F +TL +V+ +S L+ + +++S+ L+P GAV+ G Sbjct: 83 FFVINLPFYWIGYKRMGLRFMVKTLISVSLLSALSILMRDWVSFDLLNPLFGAVIYGFIA 142 Query: 149 GIGLIGLFRHQASCGGMSILATYVQERTGFKAGWLLMGFDLALFATAALFLPMDRVFYSL 208 G L+ LFRH AS GG+ ILA Y+QE T F+AG + M FD ALF A + +P+ V YS Sbjct: 143 GSALLALFRHGASLGGIGILAVYLQEHTRFRAGHIQMAFDSALFVVALIVMPLHLVIYSF 202 Query: 209 VGAITMNLFVAWNHRYEWYIA 229 +GA+ +N +A NHR + YI Sbjct: 203 IGAVVLNFVIAVNHRRDRYIG 223 >ref|YP_001168562.1| hypothetical protein Rsph17025_2368 [Rhodobacter sphaeroides ATCC 17025] gb|ABP71257.1| protein of unknown function DUF161 [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 97/201 (48%), Positives = 128/201 (63%) Query: 29 PPATPAVRHSWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQIAGVAFLVTYATGISFGMA 88 P T H+ +++ Q +G M AFG+++L LGL+ GQ AG+A L++YATG F Sbjct: 3 PVMTETTAHTRLEDAQAIAYGCTMAAFGITILTHLGLVTGQTAGLAVLISYATGWGFAPV 62 Query: 89 FTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVLTNVAGNYISYSHLDPAVGAVLAGLCV 148 F IN+PFY L RMG AFT +T +V +S L V +IS++HLDPA GAVL GL Sbjct: 63 FFAINIPFYWLGYRRMGPAFTIKTFLSVALLSALAQVMPQWISFAHLDPAFGAVLFGLTS 122 Query: 149 GIGLIGLFRHQASCGGMSILATYVQERTGFKAGWLLMGFDLALFATAALFLPMDRVFYSL 208 G L+ LFRH AS GG+ ILA Y+Q+RTGF+AGW + FD LFA A L V +S Sbjct: 123 GSALLALFRHGASLGGIGILALYLQDRTGFRAGWTQLAFDAVLFAVALLLREWPLVAWSF 182 Query: 209 VGAITMNLFVAWNHRYEWYIA 229 +GA+ +NL +A NHR + YIA Sbjct: 183 LGALVVNLVIAINHRRDRYIA 203 >ref|YP_001532980.1| hypothetical protein Dshi_1637 [Dinoroseobacter shibae DFL 12] gb|ABV93379.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 208 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 135/206 (65%) Query: 24 PARATPPATPAVRHSWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQIAGVAFLVTYATGI 83 PA P+ +RHS +D+ QG GV++ A G++ L LGL+ GQ AG+A +++YATG Sbjct: 2 PAPVPLPSPDDIRHSALDDAQGLCIGVLLCAVGLTFLSHLGLVTGQTAGLALVISYATGW 61 Query: 84 SFGMAFTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVLTNVAGNYISYSHLDPAVGAVL 143 SFG+ F ++NLPFY LA ++G FT ++LA VTA+S+ T + + P +GAV+ Sbjct: 62 SFGLVFFVVNLPFYWLAYRKLGLEFTLKSLACVTALSLATEAMPLGFTIEKITPVLGAVI 121 Query: 144 AGLCVGIGLIGLFRHQASCGGMSILATYVQERTGFKAGWLLMGFDLALFATAALFLPMDR 203 G G+GL+ +FRH+ S GG+ ++A VQ+RTG +AG++ + FDL LFA AA P+ Sbjct: 122 FGATTGLGLLAIFRHRGSLGGLGVVALLVQDRTGVRAGYVQLLFDLVLFAVAAFLFPLSI 181 Query: 204 VFYSLVGAITMNLFVAWNHRYEWYIA 229 + YSLVGA +N +A+NH + YIA Sbjct: 182 IAYSLVGAAVVNGVIAFNHNRKRYIA 207