BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1918.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777843.1| nitrate response regulator protein [Herbaspi... 558 e-157 ref|YP_002354796.1| ANTAR domain-containing protein with unknown... 290 2e-76 ref|YP_001563401.1| response regulator receiver/ANTAR domain-con... 268 1e-69 ref|YP_004489613.1| ANTAR domain-containing protein [Delftia sp.... 267 3e-69 ref|ZP_08405325.1| hypothetical protein HGR_05621 [Hylemonella g... 267 3e-69 >ref|YP_003777843.1| nitrate response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65935.1| nitrate response regulator protein [Herbaspirillum seropedicae SmR1] Length = 414 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 330/419 (78%), Positives = 361/419 (86%), Gaps = 5/419 (1%) Query: 1 MSQVLNYLITARRCEAEELQRLARTCQLVLTVGKLIHCLQQERGLSNIYLGSRGERDAQA 60 MS VL YLITARRCE EELQRL+RTCQ+VLTVG+LIHCLQQERGLSN+YLGS G+RDA A Sbjct: 1 MSNVLTYLITARRCEVEELQRLSRTCQMVLTVGQLIHCLQQERGLSNLYLGSGGQRDAAA 60 Query: 61 WQERVAASQAAQCEFDTWLGSTVPDNALSNGARLYTRIAFALHALDGLPKLRADVAALAC 120 Q RVA SQAA EF WL S DNALSNGARLYTRIAFALHAL+GLP+LR +++AL C Sbjct: 61 RQARVANSQAAAAEFQDWLHSIEQDNALSNGARLYTRIAFALHALEGLPRLREEISALRC 120 Query: 121 TPAASYERFKTVVGALLALVFEAADVAVDPQISRLLVALFNLMQGKEFAGRERAAGAAAF 180 +P SYERFKTVVGALLALVFEAADVAVD QISRLLVALFNLMQGKEFAGRERAAGAAAF Sbjct: 121 SPTESYERFKTVVGALLALVFEAADVAVDAQISRLLVALFNLMQGKEFAGRERAAGAAAF 180 Query: 181 VTGKITREQEQTIETQIEMQEQALRRFESFAEGFRNEWSAMQATLPLADLERLRRKLLTA 240 TGKITREQEQ+IE QIEMQEQALRRFESFAE R W A+QA LPLA+LERLRRKLLT+ Sbjct: 181 ATGKITREQEQSIEYQIEMQEQALRRFESFAEDVRAPWQALQAGLPLAELERLRRKLLTS 240 Query: 241 HGRPLDPELADAWYQCCSTRMDGLHRVEIHLAQYVQSQCQDKIRELQKDLDHQGQFFTQA 300 H R LD E+ADAWYQCCS R+DGLH++EIHLAQ+VQ++CQ KI ELQ++LD Q Q F+Q Sbjct: 241 HERGLDAEMADAWYQCCSARIDGLHQIEIHLAQFVQARCQAKITELQQELDDQDQLFSQQ 300 Query: 301 DDRDPLASLTAFASGLDGQPLPDGSLSAGVGPHLTQSIVDILRTQSERLQNLTQELATVR 360 D DPL L F++ LD Q L D GVG HL SIVD+LR+QSERLQNLT ELATVR Sbjct: 301 DRLDPLTPLAGFSAPLDEQALAD-----GVGSHLAHSIVDMLRSQSERLQNLTAELATVR 355 Query: 361 ESLEERKLIERAKGVLMMKQGLNEEAAYRLLRKHAMNQNRRIAEVAQAILSLTEILPDA 419 +SLEERKLIERAKGVLMMKQGLNEEAAYRLLRKHAMNQNRRIAEVAQAILSLTEILP+A Sbjct: 356 DSLEERKLIERAKGVLMMKQGLNEEAAYRLLRKHAMNQNRRIAEVAQAILSLTEILPEA 414 >ref|YP_002354796.1| ANTAR domain-containing protein with unknown sensor [Thauera sp. MZ1T] gb|ACK53900.1| ANTAR domain protein with unknown sensor [Thauera sp. MZ1T] Length = 462 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 208/456 (45%), Positives = 260/456 (57%), Gaps = 39/456 (8%) Query: 1 MSQVLNYLITARRCEAEELQRLARTCQLVLTVGKLIHCLQQERGLSNIYLGSRGERDAQA 60 M +L +L+ ARRCE EL++LAR+C+LV V +L+H LQ ERG SN++L + G Sbjct: 1 MESILAFLVAARRCELRELEQLARSCELVRAVSELVHRLQAERGCSNLHLAAGGRHFDGD 60 Query: 61 WQERVAASQAAQCEFDTWL-GSTVPDN----ALSNGARLYTRIAFALHALDGLPKLRADV 115 VAAS A TWL + V D A + G+RL TRIA ALHALDGLP LRA + Sbjct: 61 RAACVAASIEADAALRTWLEQADVLDARGGAAPTGGSRLLTRIALALHALDGLPALRATI 120 Query: 116 AALACTPAASYERFKTVVGALLALVFEAADVAVDPQISRLLVALFNLMQGKEFAGRE--- 172 AA CTP + +RF + ALLALVFEAAD+A DP ISRLLVALFNLMQGKEFAG+E Sbjct: 121 AAGRCTPHEATQRFTQAIAALLALVFEAADIATDPAISRLLVALFNLMQGKEFAGQERAA 180 Query: 173 ---RAAGAAAFVTGKITREQEQTIETQIEMQEQALRRFESFA-EGFRNEWSAMQATLPLA 228 A A E + IE QE RF +F R+ W A +PLA Sbjct: 181 GAAAFAAGRANAAANARHPAEPDLLHLIETQEACFARFAAFCPPEVRSAWDAACQAMPLA 240 Query: 229 DLERLRRKLLTA-HGRPLDPELADAWYQCCSTRMDGLHRVEIHLAQYVQSQCQDKIRELQ 287 +LERLRRKLL A G L LA+ W+ CCS R+D L +E LA +++ C +I LQ Sbjct: 241 ELERLRRKLLAAGKGGALPSALAEPWFACCSARLDHLRVIEDLLAGGLRAACAARIAALQ 300 Query: 288 KD--------------LDHQGQFFTQADDR---------DPLASLTAFASGLDGQPLPDG 324 +D D F D +P TA A G + G Sbjct: 301 RDPDDPEVLMCALAGGADAAPVFLAGGADELAGVPGEGDEPGTGQTAIAPGAERPAAAPG 360 Query: 325 SLSAGV---GPHLTQSIVDILRTQSERLQNLTQELATVRESLEERKLIERAKGVLMMKQG 381 L GP LT+S+VD+L QS RLQ + +ELA VR SL+ERKLI+RAK VLM QG Sbjct: 361 RLELAADPFGPRLTRSLVDVLHAQSCRLQAMGEELAAVRASLDERKLIDRAKAVLMRHQG 420 Query: 382 LNEEAAYRLLRKHAMNQNRRIAEVAQAILSLTEILP 417 L+E+AAYRL+R+ AMNQ RR+ +VA+A+L L LP Sbjct: 421 LSEDAAYRLIRQTAMNQGRRLPDVARAVLELEAFLP 456 >ref|YP_001563401.1| response regulator receiver/ANTAR domain-containing protein [Delftia acidovorans SPH-1] gb|ABX35016.1| response regulator receiver and ANTAR domain protein [Delftia acidovorans SPH-1] Length = 421 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 195/431 (45%), Positives = 260/431 (60%), Gaps = 23/431 (5%) Query: 1 MSQVLNYLITARRCEAEELQRLARTCQLVLTVGKLIHCLQQERGLSNIYLGSRGERDAQA 60 M LN+L+ AR+CE EL++L RT LV + +LIH LQ+ERGLSN++L S G R A Sbjct: 1 MKTALNFLVAARQCEIGELEQLQRTSALVDLLSRLIHALQKERGLSNVFLASAGARGGPA 60 Query: 61 WQERVAA----SQAAQCEF---DTWLGSTVPDNALSNGARLYTRIAFALHALDGLPKLRA 113 ++A + AA+ F D G +GARL++RIA L LD LP LR Sbjct: 61 RLAQMAECDRMAAAARDGFERVDMQPGGAGLTGHPGHGARLFSRIAHVLQCLDALPALRE 120 Query: 114 DVAALACTPAASYERFKTVVGALLALVFEAADVAVDPQISRLLVALFNLMQGKEFAGRER 173 VA+ A +P A+ + +V LLA+VFEAAD A +P ISRLLVALFN MQGKEFAG+ER Sbjct: 121 RVASRALSPEAATALYIDLVAGLLAVVFEAADSAPEPGISRLLVALFNFMQGKEFAGQER 180 Query: 174 AAGAAAFVTGKITREQEQTIETQIEMQEQALRRFESFAE----GFRNEWSAMQATLPLAD 229 A G AAF G ++Q I QE+ + F FA E SA AT LA Sbjct: 181 ATGVAAFGAGVSDAPRQQHWLHLIASQERCFQVFAEFAPPHSLALWQESSAADAT--LAV 238 Query: 230 LERLRRKLLT-AHGRPLDPELADAWYQCCSTRMDGLHRVEIHLAQYVQSQCQDKIRELQK 288 +ERLRR T A G PL E+A+ W+ CS RMD L VE L +Q QCQ +I + + Sbjct: 239 IERLRRVGCTAAAGAPLSVEMAEPWFDNCSQRMDALQTVEARLTAELQQQCQHRIADARA 298 Query: 289 DLDHQGQFFTQADDRDPLASLTAFASGLDGQPLPDGSLSAGVGPHLTQSIVDILRTQSER 348 L Q QA LA+ A+ G+ P +A +GP L +S++D+++ QS+R Sbjct: 299 AL----QTLLQAP--QALATTPVSATLAPGELQPP---AARLGPQLDRSVMDLVQDQSQR 349 Query: 349 LQNLTQELATVRESLEERKLIERAKGVLMMKQGLNEEAAYRLLRKHAMNQNRRIAEVAQA 408 LQ + EL TVR +L ERKL+ERAKG+LM ++ L+E A++LLR+ AMNQNRR+A+VAQA Sbjct: 350 LQAMQAELETVRATLTERKLLERAKGLLMARRQLSEGEAHKLLRQTAMNQNRRLADVAQA 409 Query: 409 ILSLTEILPDA 419 +LS+ ++LP A Sbjct: 410 VLSMADLLPPA 420 >ref|YP_004489613.1| ANTAR domain-containing protein [Delftia sp. Cs1-4] gb|AEF91258.1| ANTAR domain protein with unknown sensor [Delftia sp. Cs1-4] Length = 421 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 193/431 (44%), Positives = 257/431 (59%), Gaps = 23/431 (5%) Query: 1 MSQVLNYLITARRCEAEELQRLARTCQLVLTVGKLIHCLQQERGLSNIYLGSRGERDAQA 60 M LN+L+ AR+CE EL++L RT LV + +LIH LQ+ERGLSN++L S G R A Sbjct: 1 MKTALNFLVAARQCEIGELEQLQRTSALVDLLSRLIHALQKERGLSNVFLASAGARGGPA 60 Query: 61 WQ------ERVAASQAAQCEF-DTWLGSTVPDNALSNGARLYTRIAFALHALDGLPKLRA 113 +R+AA+ E D G +GARL++RIA L LD LP LR Sbjct: 61 RLAQMAECDRMAAAARDGFELVDMQPGGAGLTGHPGHGARLFSRIAHVLQCLDALPALRE 120 Query: 114 DVAALACTPAASYERFKTVVGALLALVFEAADVAVDPQISRLLVALFNLMQGKEFAGRER 173 VA+ +P A+ + +V LLA+VFEAAD A +P ISRLLVALFN MQGKEFAG+ER Sbjct: 121 RVASRTLSPEAATALYIDLVAGLLAVVFEAADSAPEPGISRLLVALFNFMQGKEFAGQER 180 Query: 174 AAGAAAFVTGKITREQEQTIETQIEMQEQALRRFESFAE----GFRNEWSAMQATLPLAD 229 A G AAF G ++Q I QE+ + F FA E S AT LA Sbjct: 181 ATGVAAFGAGVSDAPRQQHWLHLIASQERCFQVFAEFAPPHSLALWQESSGADAT--LAV 238 Query: 230 LERLRRKLLT-AHGRPLDPELADAWYQCCSTRMDGLHRVEIHLAQYVQSQCQDKIRELQK 288 +ERLRR T A G PL E+A+ W+ CS RMD L VE L +Q QCQ +I + + Sbjct: 239 IERLRRVGCTAAAGAPLSVEMAEPWFDNCSQRMDALQTVEARLTAELQQQCQHRIADARA 298 Query: 289 DLDHQGQFFTQADDRDPLASLTAFASGLDGQPLPDGSLSAGVGPHLTQSIVDILRTQSER 348 L Q QA LA+ A+ G+ P +A +GP L +S++D+++ QS+R Sbjct: 299 AL----QTLLQAP--QALATTPVSATLAPGELQPP---AARLGPQLDRSVMDLVQDQSQR 349 Query: 349 LQNLTQELATVRESLEERKLIERAKGVLMMKQGLNEEAAYRLLRKHAMNQNRRIAEVAQA 408 LQ + EL TVR +L ERKL+ERAKG+LM ++ L+E A++LLR+ AMNQNRR+A+VAQA Sbjct: 350 LQAMQAELETVRATLTERKLLERAKGLLMARRQLSEGEAHKLLRQTAMNQNRRLADVAQA 409 Query: 409 ILSLTEILPDA 419 +LS+ ++LP A Sbjct: 410 VLSMADLLPPA 420 >ref|ZP_08405325.1| hypothetical protein HGR_05621 [Hylemonella gracilis ATCC 19624] gb|EGI77527.1| hypothetical protein HGR_05621 [Hylemonella gracilis ATCC 19624] Length = 409 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 171/419 (40%), Positives = 259/419 (61%), Gaps = 13/419 (3%) Query: 1 MSQVLNYLITARRCEAEELQRLARTCQLVLTVGKLIHCLQQERGLSNIYLGSRGERDAQA 60 M+ LN+L+ AR+CE EL+ LA T +LV +G+L+H LQ+ERG+SN++L SRGER Sbjct: 1 MNSGLNFLVAARQCEISELEHLALTSELVSVIGRLVHALQKERGISNLFLASRGERFGAQ 60 Query: 61 WQERVAASQAAQCEFDTWLGSTVPDNALS-NGARLYTRIAFALHALDGLPKLRADVAALA 119 +V Q Q E + D + + NGARL+ RIA+ L AL+GLP LRA +A LA Sbjct: 61 RAPQVEECQRLQAEVAARFDALDTDASRARNGARLFNRIAYVLQALEGLPALRARIADLA 120 Query: 120 CTPAASYERFKTVVGALLALVFEAADVAVDPQISRLLVALFNLMQGKEFAGRERAAGAAA 179 TP + F ++ L+ +V EAAD A DP+I+R LVALF+ MQGKE+AG+ERA G+AA Sbjct: 121 LTPEEATTAFVRLITGLMGVVLEAADSATDPEIARALVALFHFMQGKEYAGQERALGSAA 180 Query: 180 FVTGKITREQEQTIETQIEMQEQALRRFESFA-EGFRNEWSAMQATLPLADLERLRRKLL 238 + +G+I E++Q IE Q+ L+ F F+ + R W+ Q T A +++RR Sbjct: 181 YASGRIDPERQQQWRHLIEAQDACLQVFHDFSDDNARASWAEHQDTEAQALQQKMRRVAA 240 Query: 239 TAH-GRPLDPELADAWYQCCSTRMDGLHRVEIHLAQYVQSQCQDKIRELQKDLDHQGQFF 297 A LD + WY+CC+ R+D + +VE LA +++S C+ +I + + +L Sbjct: 241 DARLSSALDSNASLPWYECCTRRIDAMRKVEDALALHLRSLCERRIAQARAEL------- 293 Query: 298 TQADDRDPLASLTAFASGLDGQPLPDGSLSAGVGPHLTQSIVDILRTQSERLQNLTQELA 357 D + L +L A+ D QP LS + PHL +S++ +++ Q+ RLQ ++ ELA Sbjct: 294 --RDQQASLQALQRQAAASDAQP-ATLLLSPSLSPHLERSVLGMVQEQNRRLQAISDELA 350 Query: 358 TVRESLEERKLIERAKGVLMMKQGLNEEAAYRLLRKHAMNQNRRIAEVAQAILSLTEIL 416 T R +L ERK+IERAKG+LM + L+EE A+ +LR+ AMNQ R++ +VA +L++ ++L Sbjct: 351 TTRAALNERKVIERAKGLLMASRKLSEEEAHAMLRQTAMNQGRKLVDVANTVLTMADLL 409