BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1916.p (655 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777844.1| Asp-tRNAAsn/Glu-tRNAGln amidotransferase sub... 820 0.0 ref|ZP_08822512.1| allophanate hydrolase [Thiorhodococcus drewsi... 656 0.0 ref|YP_004352509.1| allophanate hydrolase [Pseudomonas brassicac... 620 e-175 gb|AEA83929.1| allophanate hydrolase [Pseudomonas stutzeri DSM 4... 617 e-174 ref|YP_001172520.1| allophanate hydrolase [Pseudomonas stutzeri ... 616 e-174 >ref|YP_003777844.1| Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A [Herbaspirillum seropedicae SmR1] gb|ADJ65936.1| Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit protein [Herbaspirillum seropedicae SmR1] Length = 471 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 418/451 (92%), Positives = 431/451 (95%) Query: 1 MIHSFDLRIDALIAAYREARLTPRQVVSRLRESAIALNPQYRLYIHLLSEEETEPYLQAL 60 MIHSFDLRIDAL AAYR L PR V+ RLRESA ALNP YRLYIHLLS+ ETEPYLQAL Sbjct: 1 MIHSFDLRIDALTAAYRNGSLDPRTVMQRLRESAAALNPTYRLYIHLLSQAETEPYLQAL 60 Query: 61 EGQSPHSLPLYGVPFSIKDNIDLAGIPTTAACPAFSYVPRESATLVAQLIALGAIPIGKC 120 E QSPHSLPLYGVPFSIKDNIDLAG+PTTAACPAFSYVPRESATLVAQLIALGAIP+GKC Sbjct: 61 EQQSPHSLPLYGVPFSIKDNIDLAGVPTTAACPAFSYVPRESATLVAQLIALGAIPVGKC 120 Query: 121 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVP 180 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVP Sbjct: 121 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVP 180 Query: 181 AALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQAMQPDERDEY 240 AALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQ+ QPDERDEY Sbjct: 181 AALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQSGQPDERDEY 240 Query: 241 SRANLPHNDAAAFQPPRKGLRVGVPRQLEFLGCSESPSLFVEALGQLEAIGGVSVSIDFS 300 SRANLPHNDA+AFQPP +GLR GVPRQLEFLGCSESPSLFVEAL Q+EAIGGV+V IDFS Sbjct: 241 SRANLPHNDASAFQPPPQGLRFGVPRQLEFLGCSESPSLFVEALAQMEAIGGVAVPIDFS 300 Query: 301 PFLEAARLLYEGPWVAERYSTIEALLHEKPEEILPVIRDVLRKAPQFSAVDTFRAQYRLQ 360 PFL AARLLYEGPWVAERYSTIEALL E+P++ILPVIRDVLRKAPQ+SAVDTFRAQYRLQ Sbjct: 301 PFLAAARLLYEGPWVAERYSTIEALLQERPDDILPVIRDVLRKAPQYSAVDTFRAQYRLQ 360 Query: 361 QLKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPM 420 QLKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPM Sbjct: 361 QLKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPM 420 Query: 421 NFMKNGLPWGITVFGPAFSDQRLLGVADALQ 451 NFMKNGLPWGITVFG AFSDQ LLGVADALQ Sbjct: 421 NFMKNGLPWGITVFGRAFSDQALLGVADALQ 451 >ref|ZP_08822512.1| allophanate hydrolase [Thiorhodococcus drewsii AZ1] gb|EGV32476.1| allophanate hydrolase [Thiorhodococcus drewsii AZ1] Length = 605 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 329/451 (72%), Positives = 373/451 (82%), Gaps = 3/451 (0%) Query: 1 MIHSFDLRIDALIAAYREARLTPRQVVSRLRESAIALNPQYRLYIHLLSEEETEPYLQAL 60 M H DLR+D L AAY LTPR ++ RLR +A+AL+P++ L+IH+LSE E EPYL AL Sbjct: 1 MKHPIDLRLDILSAAYARGDLTPRTLIPRLRAAALALDPEFHLFIHVLSETELEPYLSAL 60 Query: 61 EGQSPHSLPLYGVPFSIKDNIDLAGIPTTAACPAFSYVPRESATLVAQLIALGAIPIGKC 120 + SP LPLYGVPF+IKDNIDLAG+PTTAACPA++Y P SATLV +LIALGA+P+GK Sbjct: 61 DDCSPADLPLYGVPFAIKDNIDLAGVPTTAACPAYAYTPERSATLVERLIALGAVPLGKT 120 Query: 121 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVP 180 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSS+GS+LAVALG++SFALGTDTAGSGRVP Sbjct: 121 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSAGSALAVALGVASFALGTDTAGSGRVP 180 Query: 181 AALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQAMQPDERDEY 240 AALNNLVGLKATKGLLSTAGVVPACRTLDC TFFTATAAEAS LLAL Q DERD Y Sbjct: 181 AALNNLVGLKATKGLLSTAGVVPACRTLDCTTFFTATAAEASRLLALTAQL---DERDAY 237 Query: 241 SRANLPHNDAAAFQPPRKGLRVGVPRQLEFLGCSESPSLFVEALGQLEAIGGVSVSIDFS 300 SRAN NDA AF PR G R GVPRQLEFLGC ESP+LF + L ++GG V IDF Sbjct: 238 SRANPMWNDADAFGTPRAGFRFGVPRQLEFLGCPESPALFERTVEYLRSLGGEPVEIDFD 297 Query: 301 PFLEAARLLYEGPWVAERYSTIEALLHEKPEEILPVIRDVLRKAPQFSAVDTFRAQYRLQ 360 FLEAARLLYEGPWVAERYS L+ ++P+ +LPVIRDVLR APQ +AVD FRAQYRLQ Sbjct: 298 RFLEAARLLYEGPWVAERYSVAGELIEQQPDAVLPVIRDVLRAAPQATAVDAFRAQYRLQ 357 Query: 361 QLKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPM 420 +KAECD +L +DCV+TPAYPRPVTL EL + PV+RN+DLGWYTNFMN+LDYAAVA P Sbjct: 358 AIKAECDPVLDGLDCVLTPAYPRPVTLIELAQDPVRRNADLGWYTNFMNLLDYAAVAVPA 417 Query: 421 NFMKNGLPWGITVFGPAFSDQRLLGVADALQ 451 M NGLPWG+T+FG AF+DQ LLG+ADALQ Sbjct: 418 GTMANGLPWGVTLFGRAFTDQWLLGLADALQ 448 >ref|YP_004352509.1| allophanate hydrolase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67505.1| allophanate hydrolase (urea-1-carboxylate amidohydrolase) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 592 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 325/482 (67%), Positives = 370/482 (76%), Gaps = 14/482 (2%) Query: 4 SFDLRIDALIAAYREARLTPRQVVSRLRESAIALNPQYRLYIHLLSEEETEPYLQALEGQ 63 + LR+D L YR LTPRQ++ LRE A ALNP Y L+IHLL+ EE EPYL ALE + Sbjct: 2 NLSLRLDDLRNTYRSGTLTPRQLLLGLREKAAALNPDYHLFIHLLTAEELEPYLTALESR 61 Query: 64 SPHSLPLYGVPFSIKDNIDLAGIPTTAACPAFSYVPRESATLVAQLIALGAIPIGKCNLD 123 SLPLYGVPF+IKDNIDLAGIPTTAACPAF+YVP SAT+V QL+ALGAIP+GK NLD Sbjct: 62 DLESLPLYGVPFAIKDNIDLAGIPTTAACPAFAYVPPRSATIVEQLLALGAIPLGKTNLD 121 Query: 124 QFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVPAAL 183 QFATGLNGTRSPYGACRNSV PDYP+GGSS+GSSLAVALG++SFALGTDTAGSGRVPAAL Sbjct: 122 QFATGLNGTRSPYGACRNSVLPDYPAGGSSAGSSLAVALGVASFALGTDTAGSGRVPAAL 181 Query: 184 NNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQAMQPDERDEYSRA 243 NNLVGLKAT GL+STAGVVPACRTLDCVT FTATA EAS LLAL +PD RD+YSR Sbjct: 182 NNLVGLKATLGLISTAGVVPACRTLDCVTTFTATAKEASQLLALTA---RPDPRDDYSRH 238 Query: 244 NLPHNDAAAFQPPRKGLRVGVPRQ--LEFLGCSESPSLFVEALGQLEAIGGVSVSIDFSP 301 N ND AAF PR+ R GVPRQ L F GC E P LF+EA+ +LE +GG +V +D SP Sbjct: 239 NPQWNDGAAFGVPRR-FRFGVPRQQDLAFFGCQEGPQLFLEAIERLERLGGEAVELDLSP 297 Query: 302 FLEAARLLYEGPWVAERYSTIEALLHEKPEEILPVIRDVLRKAPQFSAVDTFRAQYRLQQ 361 FLEAARLLYEGPWVAERYS L+ +PE +LPVIR VL KAP V TFRA+YRLQ Sbjct: 298 FLEAARLLYEGPWVAERYSVAGPLMEREPEAVLPVIRAVLAKAPTVDGVQTFRARYRLQA 357 Query: 362 LKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPMN 421 LKA+CDR + +DCV+TP RPVTL EL +PV RNS+LG+YTNFMN+LDYAAVA P Sbjct: 358 LKAQCDRAMDALDCVITPTIGRPVTLAELASEPVLRNSELGYYTNFMNLLDYAAVAVPSA 417 Query: 422 FMKNGLPWGITVFGPAFSDQRLLGVADALQGEEFTGV--------HARGHQVIAGAFRGG 473 FM NGLPWG+T+FG AF+DQ LL VADALQ ++ T + H V+ GA G Sbjct: 418 FMANGLPWGVTLFGRAFTDQYLLSVADALQRQQDTTLPAPANPARHDLARLVVCGAHLDG 477 Query: 474 LG 475 L Sbjct: 478 LA 479 >gb|AEA83929.1| allophanate hydrolase [Pseudomonas stutzeri DSM 4166] Length = 600 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 319/468 (68%), Positives = 374/468 (79%), Gaps = 11/468 (2%) Query: 1 MIHSFDLRIDALIAAYREARLTPRQVVSRLRESAIALNPQYRLYIHLLSEEETEPYLQAL 60 M +FDLR+ L AAY +TPRQ++ LR+ A L+P++ +IHL++ E EPYL AL Sbjct: 1 MTTTFDLRLATLSAAYTAGDITPRQLILGLRDKAAELSPEFNAFIHLMTAAELEPYLAAL 60 Query: 61 EGQSPHSLPLYGVPFSIKDNIDLAGIPTTAACPAFSYVPRESATLVAQLIALGAIPIGKC 120 +G++P LPLYGVPF+IKDNIDLAG+P TAACPAF+Y P SAT+V QL+ALGA+P+GK Sbjct: 61 DGKTPAELPLYGVPFAIKDNIDLAGVPITAACPAFAYTPETSATIVEQLLALGAVPLGKT 120 Query: 121 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVP 180 NLDQFATGLNGTRSPYG CRNSVHPDYPSGGSS+GSSLAVALGL+SFALGTDTAGSGRVP Sbjct: 121 NLDQFATGLNGTRSPYGECRNSVHPDYPSGGSSAGSSLAVALGLASFALGTDTAGSGRVP 180 Query: 181 AALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQAMQPDERDEY 240 AALNNLVGLKA+KGL+STAGVVPACRTLDCVTFFTATAAEAS LLAL + D RDEY Sbjct: 181 AALNNLVGLKASKGLISTAGVVPACRTLDCVTFFTATAAEASQLLALTARL---DPRDEY 237 Query: 241 SRANLPHNDAAAFQPPRKGLRVGVPRQLEFLGCSESPSLFVEALGQLEAIGGVSVSIDFS 300 SR+N ND +AF K R G+P+QLEFLGC+ESP+LF + L+A+GG V IDF Sbjct: 238 SRSNPLWNDGSAFGQI-KTFRFGIPQQLEFLGCAESPALFAATIEHLKALGGEPVEIDFE 296 Query: 301 PFLEAARLLYEGPWVAERYSTIEALLHEKPEEILPVIRDVLRKAPQFSAVDTFRAQYRLQ 360 PFLEAARLLYEGPWVAERYS AL+ ++P+ +LPVI+ VL KAP +AV F+AQYRLQ Sbjct: 297 PFLEAARLLYEGPWVAERYSVAGALIEQQPDAVLPVIKAVLEKAPGTTAVQLFQAQYRLQ 356 Query: 361 QLKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPM 420 QLKA CDR +A VDCV+TPAYPRPVTL EL +PV+RNSDLG+YTNFMNMLDYAAVA P Sbjct: 357 QLKAVCDRTMAEVDCVLTPAYPRPVTLAELHAEPVKRNSDLGYYTNFMNMLDYAAVAVPA 416 Query: 421 NFMKNGLPWGITVFGPAFSDQRLLGVADALQGEEFTGVHARGHQVIAG 468 M NGLPWG+T+FG F+DQ LL +ADALQ H G ++I G Sbjct: 417 GVMANGLPWGVTLFGRVFTDQYLLSLADALQ-------HQTGLKLIGG 457 >ref|YP_001172520.1| allophanate hydrolase [Pseudomonas stutzeri A1501] gb|ABP79678.1| amidase family protein [Pseudomonas stutzeri A1501] Length = 600 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 319/468 (68%), Positives = 373/468 (79%), Gaps = 11/468 (2%) Query: 1 MIHSFDLRIDALIAAYREARLTPRQVVSRLRESAIALNPQYRLYIHLLSEEETEPYLQAL 60 M +FDLR+ L AAY TPRQ++ LR+ A LNP++ +IHL++ E EPYL AL Sbjct: 1 MTTTFDLRLATLSAAYTAGDTTPRQLIIALRDKAAGLNPEFNAFIHLMTAAELEPYLAAL 60 Query: 61 EGQSPHSLPLYGVPFSIKDNIDLAGIPTTAACPAFSYVPRESATLVAQLIALGAIPIGKC 120 +G++P LPLYG+PF+IKDNIDLAG+PTTAACPAF+Y P SAT+V QLIALGA+P+GK Sbjct: 61 DGKTPAELPLYGIPFAIKDNIDLAGVPTTAACPAFAYTPETSATIVEQLIALGAVPLGKT 120 Query: 121 NLDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVP 180 NLDQFATGLNGTRSPYG CRNSVHPDYPSGGSS+GSSLAVALGL SFALGTDTAGSGRVP Sbjct: 121 NLDQFATGLNGTRSPYGECRNSVHPDYPSGGSSAGSSLAVALGLCSFALGTDTAGSGRVP 180 Query: 181 AALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASHLLALCTQAMQPDERDEY 240 AALNNLVGLKA+KGL+STAGVVPACRTLDCVTFFTATAAEAS LLAL T+ D RDEY Sbjct: 181 AALNNLVGLKASKGLISTAGVVPACRTLDCVTFFTATAAEASQLLALTTRL---DPRDEY 237 Query: 241 SRANLPHNDAAAFQPPRKGLRVGVPRQLEFLGCSESPSLFVEALGQLEAIGGVSVSIDFS 300 SR+N ND +AF K R G+P+ LEFLGC+ES +LF + QL+A+GG V +DF+ Sbjct: 238 SRSNPLWNDGSAFGQI-KTFRFGIPQHLEFLGCAESAALFAATIEQLKALGGEPVEVDFA 296 Query: 301 PFLEAARLLYEGPWVAERYSTIEALLHEKPEEILPVIRDVLRKAPQFSAVDTFRAQYRLQ 360 PFLEAARLLYEGPWVAERYS AL+ ++P+ +LPVI+ VL KAP +AV F+AQYRLQ Sbjct: 297 PFLEAARLLYEGPWVAERYSVAGALIEQQPDAVLPVIKAVLEKAPGTTAVQLFQAQYRLQ 356 Query: 361 QLKAECDRILATVDCVVTPAYPRPVTLEELREQPVQRNSDLGWYTNFMNMLDYAAVATPM 420 LKA CDR +A VDCV+TPAYPRPVTL EL +PV+RNSDLG+YTNFMNMLDYAAVA P Sbjct: 357 HLKAVCDRTMAEVDCVLTPAYPRPVTLAELHAEPVKRNSDLGYYTNFMNMLDYAAVAVPA 416 Query: 421 NFMKNGLPWGITVFGPAFSDQRLLGVADALQGEEFTGVHARGHQVIAG 468 M NGLPWG+T+FG F+DQ LL +ADALQ H G ++I G Sbjct: 417 ATMHNGLPWGVTLFGRVFTDQYLLSLADALQ-------HQTGLKLIGG 457