BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1915.p (1207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae ... 2233 0.0 ref|YP_004379173.1| biotin carboxylation domain-containing prote... 1894 0.0 ref|YP_004475330.1| urea carboxylase [Pseudomonas fulva 12-X] >g... 1880 0.0 ref|ZP_08822511.1| urea carboxylase [Thiorhodococcus drewsii AZ1... 1876 0.0 ref|YP_001186855.1| biotin carboxylation domain-containing prote... 1864 0.0 >ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] gb|ADJ65937.1| urea amidolyase protein [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 2233 bits (5786), Expect = 0.0, Method: Composition-based stats. Identities = 1146/1207 (94%), Positives = 1171/1207 (97%) Query: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY Sbjct: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR Sbjct: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 Query: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELGDAF 180 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAEL DAF Sbjct: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELADAF 180 Query: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDG+GEVIALGVRDCSVQRRNQKVLEE Sbjct: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLEE 240 Query: 241 TPAPNLPEGMADALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 TPAPNLP+GMA+ALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT Sbjct: 241 TPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 Query: 301 EQVWGVDLVRWMIELAAGDLPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAV 360 EQVWGVDLVRWMIELAAGDLPPL QLAA LQP GHAIQARLYAEDPGRQFQPCPGLLTAV Sbjct: 301 EQVWGVDLVRWMIELAAGDLPPLAQLAAGLQPRGHAIQARLYAEDPGRQFQPCPGLLTAV 360 Query: 361 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARVALNSALRETALYGVE 420 FPP DG+ALRIDTWVEAGCEI PYFDPMIAKLISWQPTREAAR+AL++ALR T LYGVE Sbjct: 361 DFPPVDGQALRIDTWVEAGCEIAPYFDPMIAKLISWQPTREAARLALDAALRATLLYGVE 420 Query: 421 TNQHYLRQILDDVPFASGQPWTRCLEHLVYRADTVEVLSPGTQTTVQDHPGRIGYWAVGV 480 TNQHYLRQIL DVPFASGQPWTRCLE LVYRADTVEVL+PGTQTTVQDHPGRIGYWAVGV Sbjct: 421 TNQHYLRQILADVPFASGQPWTRCLEQLVYRADTVEVLAPGTQTTVQDHPGRIGYWAVGV 480 Query: 481 PPSGPMDERALRLGNRLLGNAEDAAGLEVTMMGPVLRFNTAASVVVTGAVIPVLLDGVAQ 540 PPSGPMDERALRLGNRLLGNAE+AAGLEVTM GP+LRFNTAA VVVTGAVIPVLLDGVAQ Sbjct: 481 PPSGPMDERALRLGNRLLGNAEEAAGLEVTMSGPILRFNTAAMVVVTGAVIPVLLDGVAQ 540 Query: 541 PMATVLHIAAGSTLKLGTISGAGARSYLAVRGGVQVPAYLGSRSTFTLGQFGGHAGRALA 600 PMATVLHIAAGSTLKLG ISGAGARSYLAVRGGVQVP YLGSRSTFTLGQFGGHAGRALA Sbjct: 541 PMATVLHIAAGSTLKLGAISGAGARSYLAVRGGVQVPTYLGSRSTFTLGQFGGHAGRALA 600 Query: 601 SGDILHLLPLAGDEMPAAGQVLPADLYPALETVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 SGDILHL PLA D M AGQ LPA LYPALE VRQVRVIYGPHGAPEYFTPAYMETFFAT Sbjct: 601 SGDILHLAPLAADAMTQAGQTLPAALYPALEAVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 Query: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD Sbjct: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 Query: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFIPVDVSTARRIALAAQAGIASLQAQPVE 780 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRF+PV+V+TARRIALAAQAG+ASLQ QPV+ Sbjct: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFVPVEVNTARRIALAAQAGVASLQPQPVD 780 Query: 781 WSPAPLASPIVLDLGQDEQRLVARLSGDANLLLEVGSPQLDLVLRFRVHALIAALEEQAL 840 WSPAPLASPIVLDLGQDE+RLVARLSGDANLLLEVGSPQLDLVLRFRVHALI ALEEQAL Sbjct: 781 WSPAPLASPIVLDLGQDERRLVARLSGDANLLLEVGSPQLDLVLRFRVHALITALEEQAL 840 Query: 841 PGVIDLTPGIRSLQVHYQPEALPLPRLLETIAGLWDAVCARQNLTVSSRIVHLPLSWDDP 900 PGVIDLTPGIRSLQVHYQPEALPLP LL+TIAGLWDAVCA +NLTVSSRIVHLPLSWDDP Sbjct: 841 PGVIDLTPGIRSLQVHYQPEALPLPTLLQTIAGLWDAVCASENLTVSSRIVHLPLSWDDP 900 Query: 901 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGA 960 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGA Sbjct: 901 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGA 960 Query: 961 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRY 1020 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRY Sbjct: 961 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRY 1020 Query: 1021 REVAAFRGKPWLLRFFDQIRFYPVTADELQTIRRDFPLGRFEVGIEETQLNLADYQDFLQ 1080 REVAAFRGKPWLLRFFDQIRFYPVTA+ELQTIRRDFPLGRFEVGIEETQLNLADYQDFLQ Sbjct: 1021 REVAAFRGKPWLLRFFDQIRFYPVTAEELQTIRRDFPLGRFEVGIEETQLNLADYQDFLQ 1080 Query: 1081 REAEGIAAFRQHQQAAFDAERQRWIASGQANYESEEVSAASDQGPPLQAGQMAVDAPIAG 1140 REA+GIAAFRQHQQAAFDAERQRWIASGQANYESEE SA + + PLQ GQMAVDAPIAG Sbjct: 1081 READGIAAFRQHQQAAFDAERQRWIASGQANYESEESSAIAQEAAPLQDGQMAVDAPIAG 1140 Query: 1141 NLWQVKVSPGQRVAQGELLMILESMKMEINITAPEAGIVAEVRVQPGSPVRAGQCVLVME 1200 NLWQVKVSPGQRVAQGELLMILESMKMEI+I AP AG+VAEVRVQPGSPVRAGQCVLVME Sbjct: 1141 NLWQVKVSPGQRVAQGELLMILESMKMEIHIAAPAAGVVAEVRVQPGSPVRAGQCVLVME 1200 Query: 1201 NTEEEAA 1207 +TEEE A Sbjct: 1201 DTEEEVA 1207 >ref|YP_004379173.1| biotin carboxylation domain-containing protein [Pseudomonas mendocina NK-01] gb|AEB57421.1| biotin carboxylation domain-containing protein [Pseudomonas mendocina NK-01] Length = 1231 Score = 1894 bits (4907), Expect = 0.0, Method: Composition-based stats. Identities = 950/1232 (77%), Positives = 1046/1232 (84%), Gaps = 35/1232 (2%) Query: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 MFD LLIANRGAIACRILRTLR LDV GV VYSEAD SLH+ QA A SLG+GPAAQTY Sbjct: 1 MFDKLLIANRGAIACRILRTLRELDVKGVAVYSEADAASLHIQQAAEAFSLGDGPAAQTY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 L VDKILAAA+ SGA+AIHPGYGFLSENAAFAE CEAAGIAFVGPTP QLR+FGLKHTAR Sbjct: 61 LVVDKILAAAKTSGARAIHPGYGFLSENAAFAETCEAAGIAFVGPTPEQLRVFGLKHTAR 120 Query: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELGDAF 180 ALA++ GVPMLEGT+LLE++D AL A +VGYPVMLKSTAGGGGIGMRVCRS EL DAF Sbjct: 121 ALAKQHGVPMLEGTELLENLDAALVAGEQVGYPVMLKSTAGGGGIGMRVCRSAEELSDAF 180 Query: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 ++V+RLGQNNFSD+GVFIEKYI+RARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE Sbjct: 181 EAVKRLGQNNFSDSGVFIEKYIQRARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 Query: 241 TPAPNLPEGMADALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 TPAPNLP GMAD LCAAAIKLAKAVNYRS GTVEFVYDS A +FYFLEVNTRLQVEHGVT Sbjct: 241 TPAPNLPAGMADELCAAAIKLAKAVNYRSTGTVEFVYDSEAERFYFLEVNTRLQVEHGVT 300 Query: 301 EQVWGVDLVRWMIELAAGDLPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAV 360 EQVWGVDLVRWMIELAAGDLPPL +L L+PSGHAIQARLYAEDPGR FQP PGLLTAV Sbjct: 301 EQVWGVDLVRWMIELAAGDLPPLGELGKALKPSGHAIQARLYAEDPGRDFQPSPGLLTAV 360 Query: 361 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARVALNSALRETALYGVE 420 FP ADGKALRIDTWVEAGCEIPPYFDPMIAKLI+W PTRE A AL+ AL ++ LYGVE Sbjct: 361 QFPEADGKALRIDTWVEAGCEIPPYFDPMIAKLITWAPTREQASAALDKALADSVLYGVE 420 Query: 421 TNQHYLRQILDDVPFASGQPWTRCLEHLVYRADTVEVLSPGTQTTVQDHPGRIGYWAVGV 480 N+ YLRQIL D PFASG PWTRCLE+L Y+A T EVLS GTQTTVQD PGRIGYWAVGV Sbjct: 421 CNRDYLRQILSDAPFASGSPWTRCLENLAYQATTFEVLSAGTQTTVQDFPGRIGYWAVGV 480 Query: 481 PPSGPMDERALRLGNRLLGNAEDAAGLEVTMMGPVLRFNTAASVVVTGAVIPVLLDGVAQ 540 PPSGPMD RALRLGNRLLGN E AA LE+TM GP+LRFNT A + VTGA IP+ +DGV Q Sbjct: 481 PPSGPMDSRALRLGNRLLGNDEGAAALEITMSGPLLRFNTDAVIAVTGAEIPLSIDGVEQ 540 Query: 541 PMATVLHIAAGSTLKLGTISGAGARSYLAVRGGVQVPAYLGSRSTFTLGQFGGHAGRALA 600 PM T L + AGS L LGTI+GAGARSYL++RGG+QVP YLGS+STFTLGQFGGH GRAL Sbjct: 541 PMNTALLVKAGSNLTLGTIAGAGARSYLSIRGGIQVPDYLGSKSTFTLGQFGGHGGRALR 600 Query: 601 SGDILHLLPLAGDEMPAAGQVLPADLYPALETVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 +GD+LH+ LA + AG LPA+LYPAL TVR++RVIYGPHGAPEYFTPAY++TFFAT Sbjct: 601 AGDVLHIPALADRQ---AGNQLPAELYPALPTVREIRVIYGPHGAPEYFTPAYIDTFFAT 657 Query: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 WEVHFNSSRTGVRLIGPKPEWVR+SGGEAGLHPSNIHDNPYA+GAVDFTGDMPVILGPD Sbjct: 658 AWEVHFNSSRTGVRLIGPKPEWVRESGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPD 717 Query: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFIPVDVSTARRIALAAQAGIASLQ----- 775 GPSLGGFVCPVT+IEADLWQ+GQLKAGDKVRF+PVD++TAR +A A+ + +L+ Sbjct: 718 GPSLGGFVCPVTIIEADLWQLGQLKAGDKVRFVPVDIATARELAKASASECNTLRGSGFS 777 Query: 776 ---------------------------AQPVEWSPAPLASPIVLDLGQDEQRLVARLSGD 808 A P + L PIVLDLG+ + RLVARLSGD Sbjct: 778 RDAGGTEIADKSAPTDTTVARMQSGEIAAPESRIASGLQPPIVLDLGEGDTRLVARLSGD 837 Query: 809 ANLLLEVGSPQLDLVLRFRVHALIAALEEQALPGVIDLTPGIRSLQVHYQPEALPLPRLL 868 +LLLE+G P+LDLVLRFR HAL+ ALE + L GVIDLTPGIRSLQVHYQPE L L LL Sbjct: 838 THLLLEIGQPELDLVLRFRGHALMQALEAKRLDGVIDLTPGIRSLQVHYQPETLALHELL 897 Query: 869 ETIAGLWDAVCARQNLTVSSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIR 928 + +AG WDAVCA ++L V SRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIR Sbjct: 898 DIVAGEWDAVCAARDLKVPSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIR 957 Query: 929 RINDLKDIGAVRETVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENS 988 RINDL+++ V TVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENS Sbjct: 958 RINDLENLDEVYRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENS 1017 Query: 989 VGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRYREVAAFRGKPWLLRFFDQIRFYPVTADE 1048 VGIGGAY+C+YGMEGPGGYQFVGRTLQMWNRYREVAAF GKPWLLRFFDQIRFYPV+ADE Sbjct: 1018 VGIGGAYMCVYGMEGPGGYQFVGRTLQMWNRYREVAAFGGKPWLLRFFDQIRFYPVSADE 1077 Query: 1049 LQTIRRDFPLGRFEVGIEETQLNLADYQDFLQREAEGIAAFRQHQQAAFDAERQRWIASG 1108 L IRRDFPLGRF++ IEE++L LADYQ FL EA+GIAAFR Q+ AF AERQRWI SG Sbjct: 1078 LLRIRRDFPLGRFDLRIEESELALADYQQFLTDEADGIAAFRDQQRTAFAAERQRWIDSG 1137 Query: 1109 QANYESEEVSAASDQGPPLQAGQMAVDAPIAGNLWQVKVSPGQRVAQGELLMILESMKME 1168 QA++ES+E A + PL AGQ +V++ IAGNLWQV+V G RV G++L+ILESMKME Sbjct: 1138 QAHFESDEGVAEETEDAPLGAGQCSVNSHIAGNLWQVQVEAGARVEAGDVLVILESMKME 1197 Query: 1169 INITAPEAGIVAEVRVQPGSPVRAGQCVLVME 1200 I +TAP AG V EVRVQPGSPVR GQ V+V+E Sbjct: 1198 IPLTAPMAGTVREVRVQPGSPVRPGQRVVVLE 1229 >ref|YP_004475330.1| urea carboxylase [Pseudomonas fulva 12-X] gb|AEF23236.1| urea carboxylase [Pseudomonas fulva 12-X] Length = 1224 Score = 1880 bits (4871), Expect = 0.0, Method: Composition-based stats. Identities = 958/1225 (78%), Positives = 1048/1225 (85%), Gaps = 28/1225 (2%) Query: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 MF+ LLIANRGAIACRILRTLR LDV GV VYSEAD+ SLHV QAD A SLGEGPAAQTY Sbjct: 1 MFEKLLIANRGAIACRILRTLRELDVKGVTVYSEADVASLHVQQADEAFSLGEGPAAQTY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 L VDKILA AR +GA+AIHPGYGFLSENAAFAEACEAAGIAFVGPTP QLR+FGLKHTAR Sbjct: 61 LVVDKILAVARQTGAKAIHPGYGFLSENAAFAEACEAAGIAFVGPTPEQLRVFGLKHTAR 120 Query: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELGDAF 180 ALA++ GVPMLEGT+LLE+ID AL A +VGYPVMLKSTAGGGGIGMRVCRS AEL DAF Sbjct: 121 ALAKQHGVPMLEGTELLENIDAALVAGEQVGYPVMLKSTAGGGGIGMRVCRSAAELSDAF 180 Query: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 D+V+RLGQNNFSD+GVFIEKYI+RARHLEVQVFGDGQGEV+ALGVRDCSVQRRNQKVLEE Sbjct: 181 DAVKRLGQNNFSDSGVFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEE 240 Query: 241 TPAPNLPEGMADALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 TPAPNLP GM +ALCAAAIKLAKAVNYRSAGTVEFVYDS A +FYFLEVNTRLQVEHGVT Sbjct: 241 TPAPNLPAGMNEALCAAAIKLAKAVNYRSAGTVEFVYDSEAERFYFLEVNTRLQVEHGVT 300 Query: 301 EQVWGVDLVRWMIELAAGDLPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAV 360 EQVWGVDLVRWMIELAAGDLPPL +L L+PSGHAIQARLYAEDPGR FQP PGLLTAV Sbjct: 301 EQVWGVDLVRWMIELAAGDLPPLGELGKALKPSGHAIQARLYAEDPGRDFQPSPGLLTAV 360 Query: 361 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARVALNSALRETALYGVE 420 FP ADGK LRIDTWVEAGCEIPPYFDPMIAKLI+WQP+RE A AL+ AL ++ LYGVE Sbjct: 361 QFPEADGKTLRIDTWVEAGCEIPPYFDPMIAKLITWQPSREQASAALDKALADSVLYGVE 420 Query: 421 TNQHYLRQILDDVPFASGQPWTRCLEHLVYRADTVEVLSPGTQTTVQDHPGRIGYWAVGV 480 N+ YLRQIL D PFASG PWTRCLE+L Y+A T EVLS GTQTTVQD PGRIGYWAVGV Sbjct: 421 CNRDYLRQILSDAPFASGSPWTRCLENLTYQATTFEVLSAGTQTTVQDFPGRIGYWAVGV 480 Query: 481 PPSGPMDERALRLGNRLLGNAEDAAGLEVTMMGPVLRFNTAASVVVTGAVIPVLLDGVAQ 540 PPSGPMD RALRLGNRLLGN E AA LE+TM GP+LRFNT A + VTGA IP+ +DGV Q Sbjct: 481 PPSGPMDSRALRLGNRLLGNDEGAAALEITMSGPLLRFNTDAVIAVTGAEIPLGIDGVEQ 540 Query: 541 PMATVLHIAAGSTLKLGTISGAGARSYLAVRGGVQVPAYLGSRSTFTLGQFGGHAGRALA 600 PM T L IAAGSTL LGTI+GAGARSYL+VRGG+QVP YLGS+STFTLGQFGGH GRAL Sbjct: 541 PMNTALLIAAGSTLALGTIAGAGARSYLSVRGGIQVPDYLGSKSTFTLGQFGGHGGRALR 600 Query: 601 SGDILHLLPLAGDEMPAAGQVLPADLYPALETVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 +GD+LH+ LA + AG LPA+LYPAL VR++RVIYGPHGAPEYFTPAY++TFFAT Sbjct: 601 AGDVLHIPSLADRQ---AGNQLPAELYPALPAVREIRVIYGPHGAPEYFTPAYIDTFFAT 657 Query: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 WEVHFNSSRTGVRLIGPKPEWVR+SGGEAGLHPSNIHDNPYA+GAVDFTGDMPVILGPD Sbjct: 658 AWEVHFNSSRTGVRLIGPKPEWVRESGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPD 717 Query: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFIPVDVSTARRIA---------------- 764 GPSLGGFVCPVT+IEADLWQ+GQLKAGDKVRFI VD++TAR +A Sbjct: 718 GPSLGGFVCPVTIIEADLWQLGQLKAGDKVRFIAVDIATARELAKTNARECTSLCGSGRA 777 Query: 765 ---LAAQAG------IASLQAQPVEWSPAPLASPIVLDLGQDEQRLVARLSGDANLLLEV 815 + AG ++L V + L SPIVLD+GQD+ RLVARLSGD +LLLE+ Sbjct: 778 AFRFSRDAGDTPIADKSALTKATVPTKASELQSPIVLDIGQDDTRLVARLSGDTHLLLEI 837 Query: 816 GSPQLDLVLRFRVHALIAALEEQALPGVIDLTPGIRSLQVHYQPEALPLPRLLETIAGLW 875 G P+LDLVLRFR HAL+ ALE + + GVIDLTPGIRSLQVHYQPE L L +LL +AG W Sbjct: 838 GQPELDLVLRFRGHALMQALEAKQIDGVIDLTPGIRSLQVHYQPETLALQKLLAIVAGEW 897 Query: 876 DAVCARQNLTVSSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKD 935 DAVCA ++L V SRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDL + Sbjct: 898 DAVCAAKDLKVPSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLPN 957 Query: 936 IGAVRETVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAY 995 + V TVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAY Sbjct: 958 LDEVYRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAY 1017 Query: 996 LCIYGMEGPGGYQFVGRTLQMWNRYREVAAFRGKPWLLRFFDQIRFYPVTADELQTIRRD 1055 +C+YGMEGPGGYQFVGRTLQMWNRYREVAAF GKPWLLRFFDQIRFYPV+ADEL IRRD Sbjct: 1018 MCVYGMEGPGGYQFVGRTLQMWNRYREVAAFGGKPWLLRFFDQIRFYPVSADELLRIRRD 1077 Query: 1056 FPLGRFEVGIEETQLNLADYQDFLQREAEGIAAFRQHQQAAFDAERQRWIASGQANYESE 1115 FPLGRFE+ IEE++L LADYQ FL EA+GI AFR Q+ AF AERQRWI SGQA++ES+ Sbjct: 1078 FPLGRFELRIEESELALADYQQFLTDEADGITAFRDQQRTAFAAERQRWIDSGQAHFESD 1137 Query: 1116 EVSAASDQGPPLQAGQMAVDAPIAGNLWQVKVSPGQRVAQGELLMILESMKMEINITAPE 1175 E A + PL AGQ +VD+ IAGNLWQV+V G RV G++L+ILESMKMEI ITAP Sbjct: 1138 EGVAEVTEDAPLDAGQHSVDSHIAGNLWQVQVEAGARVEAGDVLVILESMKMEIPITAPV 1197 Query: 1176 AGIVAEVRVQPGSPVRAGQCVLVME 1200 AGIV EVRVQPG+ VR GQ V V+E Sbjct: 1198 AGIVREVRVQPGAAVRVGQRVAVIE 1222 >ref|ZP_08822511.1| urea carboxylase [Thiorhodococcus drewsii AZ1] gb|EGV32475.1| urea carboxylase [Thiorhodococcus drewsii AZ1] Length = 1199 Score = 1876 bits (4859), Expect = 0.0, Method: Composition-based stats. Identities = 956/1200 (79%), Positives = 1047/1200 (87%), Gaps = 3/1200 (0%) Query: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 MF+ LLIANRGAIACR+LRTLR L V GV VYSEAD+ SLHV QAD AISLG+GPA+QTY Sbjct: 1 MFNKLLIANRGAIACRVLRTLRNLGVQGVTVYSEADVASLHVQQADHAISLGDGPASQTY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 LAVDKILAAARDSG QAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLR+FGLKHTAR Sbjct: 61 LAVDKILAAARDSGVQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRVFGLKHTAR 120 Query: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELGDAF 180 ALAREQGVP+LEGT+LLE +D ALAA ++VGYPVMLKSTAGGGGIGMRVC S EL DAF Sbjct: 121 ALAREQGVPLLEGTELLEDLDSALAAGAQVGYPVMLKSTAGGGGIGMRVCCSSEELTDAF 180 Query: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 D+VRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDG GEVIALGVRDCSVQRRNQKVLEE Sbjct: 181 DTVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGHGEVIALGVRDCSVQRRNQKVLEE 240 Query: 241 TPAPNLPEGMADALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 TPA NLP GMADALCAAA+KLA+AVNYRSAGTVEFVYDS A +FYFLEVNTRLQVEHGVT Sbjct: 241 TPASNLPAGMADALCAAAVKLARAVNYRSAGTVEFVYDSEAERFYFLEVNTRLQVEHGVT 300 Query: 301 EQVWGVDLVRWMIELAAGDLPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAV 360 EQVWGVDLVRWM+ELAAG L PL +L+ L PSGHAIQARLYAEDPGR FQP PGLLTAV Sbjct: 301 EQVWGVDLVRWMVELAAGTLAPLAELSKNLHPSGHAIQARLYAEDPGRDFQPSPGLLTAV 360 Query: 361 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARVALNSALRETALYGVE 420 AFP A G+ALRIDTWVEAGCEIPPYFDPMIAKLI+W PTRE AR++L++AL ++ LYGVE Sbjct: 361 AFPEAVGRALRIDTWVEAGCEIPPYFDPMIAKLIAWAPTREQARLSLDAALADSVLYGVE 420 Query: 421 TNQHYLRQILDDVPFASGQPWTRCLEHLVYRADTVEVLSPGTQTTVQDHPGRIGYWAVGV 480 TN YLRQIL +PF G PWTRCLE LVYRADTVEV+S GTQTTVQD PGR+GYWAVGV Sbjct: 421 TNCDYLRQILSHMPFVVGAPWTRCLEGLVYRADTVEVMSAGTQTTVQDVPGRLGYWAVGV 480 Query: 481 PPSGPMDERALRLGNRLLGNAEDAAGLEVTMMGPVLRFNTAASVVVTGAVIPVLLDGVAQ 540 PPSGPMD+RALRLGNRL+GN E AAGLE+TM GP LRFN A V VTGA IP+ +DGV Q Sbjct: 481 PPSGPMDDRALRLGNRLVGNPESAAGLEITMSGPTLRFNADAVVAVTGAEIPLRVDGVEQ 540 Query: 541 PMATVLHIAAGSTLKLGTISGAGARSYLAVRGGVQVPAYLGSRSTFTLGQFGGHAGRALA 600 P+ T L +AAGSTL LGTI GAGARSYL +RGG+Q+P+YLGS+STFTLGQFGGH GRAL Sbjct: 541 PLHTALFVAAGSTLALGTIVGAGARSYLVLRGGLQLPSYLGSKSTFTLGQFGGHGGRALR 600 Query: 601 SGDILHLLPLAGDEMPAAGQVLPADLYPALETVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 +GD+LHL PL D AG L +L L VR++RVIYGPHGAPEYFTPA +ETFFAT Sbjct: 601 AGDVLHLAPLVDD---TAGAALRDELCLPLPAVRELRVIYGPHGAPEYFTPASIETFFAT 657 Query: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 DWEVHFNSSRTGVRLIGPKP+W RDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD Sbjct: 658 DWEVHFNSSRTGVRLIGPKPDWTRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 717 Query: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFIPVDVSTARRIALAAQAGIASLQAQPVE 780 GPSLGGFVCPVTVIEADLWQ+GQLKAGDKVRF+PVD++TARR+A A + SL PV+ Sbjct: 718 GPSLGGFVCPVTVIEADLWQLGQLKAGDKVRFVPVDIATARRLAEARAQEVNSLALAPVD 777 Query: 781 WSPAPLASPIVLDLGQDEQRLVARLSGDANLLLEVGSPQLDLVLRFRVHALIAALEEQAL 840 W PA LASP+ LD+G + L+ARLSGD +LLLE+G P+LDLVLRFR HAL+ ALE +AL Sbjct: 778 WRPAALASPVALDIGSASKHLMARLSGDTHLLLEIGEPELDLVLRFRAHALMQALESRAL 837 Query: 841 PGVIDLTPGIRSLQVHYQPEALPLPRLLETIAGLWDAVCARQNLTVSSRIVHLPLSWDDP 900 GVIDLTPGIRSLQVHYQP+ LPL +LL I LWD VCA +L+V SRIVHLPLSWDDP Sbjct: 838 AGVIDLTPGIRSLQVHYQPQVLPLAKLLAAIVELWDGVCATDDLSVPSRIVHLPLSWDDP 897 Query: 901 ACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLKDIGAVRETVFDASYLVMGLGDVYLGA 960 ACQLAI+KYMTTVRKDAPWCPSNLEFIRRINDL ++ V TVF+ASYLVMGLGDVYLGA Sbjct: 898 ACQLAIQKYMTTVRKDAPWCPSNLEFIRRINDLPNLDEVYRTVFEASYLVMGLGDVYLGA 957 Query: 961 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRY 1020 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLC+YGMEGPGGYQFVGRTLQMWNRY Sbjct: 958 PVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTLQMWNRY 1017 Query: 1021 REVAAFRGKPWLLRFFDQIRFYPVTADELQTIRRDFPLGRFEVGIEETQLNLADYQDFLQ 1080 R V AF G PWLLRFFDQIRFYPV+AD LQ IRRDFPLGR + IE + LNLADYQ FL Sbjct: 1018 RAVDAFEGNPWLLRFFDQIRFYPVSADALQRIRRDFPLGRHPLRIEHSTLNLADYQAFLT 1077 Query: 1081 REAEGIAAFRQHQQAAFDAERQRWIASGQANYESEEVSAASDQGPPLQAGQMAVDAPIAG 1140 REAEGIAAFR Q+AAFDAERQRWIA+GQA++ESEEV+ PL AGQ A+++ IAG Sbjct: 1078 REAEGIAAFRAQQRAAFDAERQRWIATGQAHFESEEVAPDIGADEPLSAGQHAIESHIAG 1137 Query: 1141 NLWQVKVSPGQRVAQGELLMILESMKMEINITAPEAGIVAEVRVQPGSPVRAGQCVLVME 1200 NLWQV V GQRV G++L++LESMKMEI + AP AGIV EVRVQPGSPVRAGQCV+V+E Sbjct: 1138 NLWQVSVEVGQRVGAGDVLVVLESMKMEIALDAPCAGIVREVRVQPGSPVRAGQCVVVIE 1197 >ref|YP_001186855.1| biotin carboxylation domain-containing protein [Pseudomonas mendocina ymp] gb|ABP84123.1| biotin carboxylation domain protein [Pseudomonas mendocina ymp] Length = 1231 Score = 1864 bits (4829), Expect = 0.0, Method: Composition-based stats. Identities = 956/1232 (77%), Positives = 1052/1232 (85%), Gaps = 35/1232 (2%) Query: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 MFD LLIANRGAIACR+LRTLR L V+GV VY+EAD SLH+ QAD A LG+GPAAQTY Sbjct: 1 MFDKLLIANRGAIACRVLRTLRELKVSGVAVYAEADAASLHIQQADEAFCLGDGPAAQTY 60 Query: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 L VDKILAAA+ SGA+AIHPGYGFLSENAAFAEACEAAGIAFVGPTP QLR+FGLKHTAR Sbjct: 61 LVVDKILAAAKASGAKAIHPGYGFLSENAAFAEACEAAGIAFVGPTPEQLRVFGLKHTAR 120 Query: 121 ALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELGDAF 180 ALA++ GVPMLEGT+LLESID ALAA VGYPVMLKSTAGGGGIGMRVCRS AEL +AF Sbjct: 121 ALAKQHGVPMLEGTELLESIDAALAAGEAVGYPVMLKSTAGGGGIGMRVCRSAAELSEAF 180 Query: 181 DSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE 240 ++V+RLGQNNFSD+GVFIEKYI+RARHLEVQVFGDGQGEV+ALGVRDCSVQRRNQKVLEE Sbjct: 181 EAVKRLGQNNFSDSGVFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEE 240 Query: 241 TPAPNLPEGMADALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVT 300 TPAPNLP GM +ALCAAAIKLAKAV+YRSAGTVEFVYDS A +FYFLEVNTRLQVEHGVT Sbjct: 241 TPAPNLPAGMNEALCAAAIKLAKAVSYRSAGTVEFVYDSEAERFYFLEVNTRLQVEHGVT 300 Query: 301 EQVWGVDLVRWMIELAAGDLPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLTAV 360 EQVWGVDLVRWMIELAAGDLPPL +LA TL+P+GHAIQARLYAEDPGR FQP PGLLTAV Sbjct: 301 EQVWGVDLVRWMIELAAGDLPPLSELAKTLKPNGHAIQARLYAEDPGRDFQPSPGLLTAV 360 Query: 361 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARVALNSALRETALYGVE 420 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLI+W P+RE A ALN AL T LYGVE Sbjct: 361 AFPPADGKALRIDTWVEAGCEIPPYFDPMIAKLITWAPSREEASHALNQALAGTLLYGVE 420 Query: 421 TNQHYLRQILDDVPFASGQPWTRCLEHLVYRADTVEVLSPGTQTTVQDHPGRIGYWAVGV 480 N+ YLRQIL D PFASG PWTRCLE+LVY+A T EVLS GTQT+VQD PGR+GYWAVGV Sbjct: 421 CNRDYLRQILSDAPFASGHPWTRCLENLVYQASTFEVLSAGTQTSVQDFPGRLGYWAVGV 480 Query: 481 PPSGPMDERALRLGNRLLGNAEDAAGLEVTMMGPVLRFNTAASVVVTGAVIPVLLDGVAQ 540 PPSGPMD RALRLGNRLLGN E AAGLE+TM GP+LRFN A V VTGA IP+ +DGV Q Sbjct: 481 PPSGPMDSRALRLGNRLLGNDEGAAGLEITMSGPLLRFNCDAVVAVTGAEIPLSIDGVEQ 540 Query: 541 PMATVLHIAAGSTLKLGTISGAGARSYLAVRGGVQVPAYLGSRSTFTLGQFGGHAGRALA 600 PM T L I AGSTL LGTI+G+GARSYL++RGG+QVP YLGS+STFTLGQFGGH GRAL Sbjct: 541 PMNTALPIEAGSTLTLGTIAGSGARSYLSIRGGIQVPDYLGSKSTFTLGQFGGHGGRALR 600 Query: 601 SGDILHLLPLAGDEMPAAGQVLPADLYPALETVRQVRVIYGPHGAPEYFTPAYMETFFAT 660 +GD+LHLL LA +G LPA+L PAL VR++RVIYGPHGAPEYFTPAY+++F AT Sbjct: 601 AGDVLHLLQLADT---GSGAKLPAELCPALPAVRELRVIYGPHGAPEYFTPAYVDSFLAT 657 Query: 661 DWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPD 720 +WEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYA+GAVDFTGDMPVILGPD Sbjct: 658 EWEVHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPD 717 Query: 721 GPSLGGFVCPVTVIEADLWQIGQLKAGDKVRFIPVDVSTARRIALAAQAGIASL------ 774 GPSLGGFVC VT+IEADLWQ+GQLKAGDKVRF+PVD++TAR +A A+ + SL Sbjct: 718 GPSLGGFVCLVTIIEADLWQLGQLKAGDKVRFVPVDIATARELAKASASECTSLCGSGFS 777 Query: 775 --------------------------QAQPVEWSPAPLASPIVLDLGQDEQRLVARLSGD 808 A P + L SPIVLD+GQ + RLVARLSGD Sbjct: 778 RDAGNTEIADKSAPTDATVARMQSGENAAPESRIASGLQSPIVLDIGQADTRLVARLSGD 837 Query: 809 ANLLLEVGSPQLDLVLRFRVHALIAALEEQALPGVIDLTPGIRSLQVHYQPEALPLPRLL 868 +LLLE+G P+LDLVLRFR HAL+ ALE + L GVIDLTPGIRSLQVHYQPE LPL RLL Sbjct: 838 THLLLEIGQPELDLVLRFRGHALMQALEAKRLAGVIDLTPGIRSLQVHYQPETLPLQRLL 897 Query: 869 ETIAGLWDAVCARQNLTVSSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIR 928 + +AG WDAVCA ++L V SRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIR Sbjct: 898 DLVAGEWDAVCAAKDLKVPSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIR 957 Query: 929 RINDLKDIGAVRETVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENS 988 RINDL ++ V TVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENS Sbjct: 958 RINDLPNLDEVYRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENS 1017 Query: 989 VGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRYREVAAFRGKPWLLRFFDQIRFYPVTADE 1048 VGIGGAY+C+YGMEGPGGYQFVGRTLQMWNRYREV AF GKPWLLRFFDQIRFYPV+ADE Sbjct: 1018 VGIGGAYMCVYGMEGPGGYQFVGRTLQMWNRYREVEAFDGKPWLLRFFDQIRFYPVSADE 1077 Query: 1049 LQTIRRDFPLGRFEVGIEETQLNLADYQDFLQREAEGIAAFRQHQQAAFDAERQRWIASG 1108 L IRRDFPLGR+ + I+ ++L LADYQ FL EAEGIAAFRQ Q+AAFDAERQRWI SG Sbjct: 1078 LLRIRRDFPLGRYPLRIQHSELALADYQRFLDEEAEGIAAFRQQQRAAFDAERQRWIESG 1137 Query: 1109 QANYESEEVSAASDQGPPLQAGQMAVDAPIAGNLWQVKVSPGQRVAQGELLMILESMKME 1168 QA++E EEV+A PL AGQ +D+ IAGNLWQV+V G +V G++L+ILESMKME Sbjct: 1138 QAHFEVEEVAAELGDDAPLSAGQHGIDSHIAGNLWQVQVEAGAQVQAGDVLVILESMKME 1197 Query: 1169 INITAPEAGIVAEVRVQPGSPVRAGQCVLVME 1200 I +TAP AG V EVRVQPGSPVRAGQ V+V+E Sbjct: 1198 IPLTAPVAGTVREVRVQPGSPVRAGQRVVVLE 1229