BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1913.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777847.1| hypothetical protein Hsero_4473 [Herbaspiril... 487 e-136 ref|ZP_08822509.1| urea carboxylase-associated protein 2 [Thiorh... 403 e-110 ref|YP_004714278.1| hypothetical protein PSTAB_1908 [Pseudomonas... 395 e-108 ref|YP_004475327.1| urea carboxylase [Pseudomonas fulva 12-X] >g... 393 e-107 ref|YP_001172522.1| hypothetical protein PST_2009 [Pseudomonas s... 393 e-107 >ref|YP_003777847.1| hypothetical protein Hsero_4473 [Herbaspirillum seropedicae SmR1] gb|ADJ65939.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 231/243 (95%), Positives = 238/243 (97%) Query: 62 MSKDPLALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNL 121 MSKDPLALQARLYEE+LPGGGHTSFILKRGQSLRITDIEG ANVSMMMLNAQQPSERLNL Sbjct: 1 MSKDPLALQARLYEEVLPGGGHTSFILKRGQSLRITDIEGSANVSMMMLNAQQPSERLNL 60 Query: 122 PDTLKGQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQE 181 PDTLKGQHTARLQAGHCLYSDMGRVLAAIT+DTCGWHDSFGGVLNAEEVREKYGQGRYQE Sbjct: 61 PDTLKGQHTARLQAGHCLYSDMGRVLAAITDDTCGWHDSFGGVLNAEEVREKYGQGRYQE 120 Query: 182 LRNGFHRNGADNLLVEMGKWNLDLQDLLMVVNLFSRVNVDAEGVFHFVPGNSKAGDFIEL 241 LRNGF+RNG DNLLVEMGKWNLDLQDLLMVVNLFSRV VDAEGVFHFVPGNSK+GD++EL Sbjct: 121 LRNGFYRNGVDNLLVEMGKWNLDLQDLLMVVNLFSRVEVDAEGVFHFVPGNSKSGDYLEL 180 Query: 242 AAPMDTLIILTALQHPMDPHPHYAPRPVRLAWLQTHSDDSTHACRHSRPENERAFHNTER 301 AAPMDTLIILTALQHPMDPHPHYAPRPVRL WLQTHSDDSTHACRH+RPEN RAFHNTER Sbjct: 181 AAPMDTLIILTALQHPMDPHPHYAPRPVRLEWLQTHSDDSTHACRHARPENARAFHNTER 240 Query: 302 FHL 304 FHL Sbjct: 241 FHL 243 >ref|ZP_08822509.1| urea carboxylase-associated protein 2 [Thiorhodococcus drewsii AZ1] gb|EGV32473.1| urea carboxylase-associated protein 2 [Thiorhodococcus drewsii AZ1] Length = 243 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 189/243 (77%), Positives = 213/243 (87%) Query: 62 MSKDPLALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNL 121 MS DP+A+Q+ LYEE +PGGGHTSFILKRGQ+LR+TDIEGGANVS+M+LNA QPSERLNL Sbjct: 1 MSADPMAVQSALYEETVPGGGHTSFILKRGQTLRLTDIEGGANVSLMLLNASQPSERLNL 60 Query: 122 PDTLKGQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQE 181 PDTLKGQHTARL AGHCLYSDMGRVLAAI DT GWHDSFGGVLNAEEVREKYG+GRYQE Sbjct: 61 PDTLKGQHTARLTAGHCLYSDMGRVLAAIIADTRGWHDSFGGVLNAEEVREKYGEGRYQE 120 Query: 182 LRNGFHRNGADNLLVEMGKWNLDLQDLLMVVNLFSRVNVDAEGVFHFVPGNSKAGDFIEL 241 L NGF RNG DNLLVEMGKWNL L+DLLMVVNLFS+V VDA+G FHF + +AGD++EL Sbjct: 121 LHNGFFRNGTDNLLVEMGKWNLGLEDLLMVVNLFSKVTVDADGGFHFEEDHGQAGDYVEL 180 Query: 242 AAPMDTLIILTALQHPMDPHPHYAPRPVRLAWLQTHSDDSTHACRHSRPENERAFHNTER 301 APMDTL+ILTALQHP+DP+P YAPR V+L+W + SD + CR SRPEN RAFHNTER Sbjct: 181 YAPMDTLVILTALQHPLDPNPQYAPRSVQLSWREERSDGISVVCRTSRPENARAFHNTER 240 Query: 302 FHL 304 F+L Sbjct: 241 FYL 243 >ref|YP_004714278.1| hypothetical protein PSTAB_1908 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ05189.1| hypothetical protein PSTAB_1908 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 242 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 185/238 (77%), Positives = 211/238 (88%) Query: 67 LALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLK 126 LA++ LYEE +PGGGHTSFILKRGQ LR+TD+EGGANVS+M+LNAQ+ SERLNLPDTLK Sbjct: 5 LAIRPTLYEETVPGGGHTSFILKRGQLLRLTDLEGGANVSLMLLNAQEKSERLNLPDTLK 64 Query: 127 GQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQELRNGF 186 GQHTA+L AGHCLYSDMGRVLAAIT DTCGWHDSFGGVLNA+EV EKYGQGRYQELRNGF Sbjct: 65 GQHTAKLTAGHCLYSDMGRVLAAITADTCGWHDSFGGVLNADEVAEKYGQGRYQELRNGF 124 Query: 187 HRNGADNLLVEMGKWNLDLQDLLMVVNLFSRVNVDAEGVFHFVPGNSKAGDFIELAAPMD 246 RNG DNLLVEMGKWNL+LQDLLMV+NLFSRV+V A+G F F G+SKAGD+IEL APMD Sbjct: 125 FRNGTDNLLVEMGKWNLNLQDLLMVLNLFSRVDVTADGAFAFHQGHSKAGDYIELYAPMD 184 Query: 247 TLIILTALQHPMDPHPHYAPRPVRLAWLQTHSDDSTHACRHSRPENERAFHNTERFHL 304 TL+ILTALQHP+DP+P YAP+PV+L+W + SD + CR SRPEN RAFHNTER ++ Sbjct: 185 TLVILTALQHPLDPNPLYAPKPVQLSWHKVESDGISVLCRTSRPENGRAFHNTERLYI 242 >ref|YP_004475327.1| urea carboxylase [Pseudomonas fulva 12-X] gb|AEF23233.1| urea carboxylase-associated protein 2 [Pseudomonas fulva 12-X] Length = 242 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 182/238 (76%), Positives = 207/238 (86%) Query: 67 LALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLK 126 L L+ LYEE +PGGGHTSF+LKRGQ LR+TDIEGGANVS+++ NA + SERLNLPDTLK Sbjct: 5 LTLRPTLYEETVPGGGHTSFVLKRGQLLRLTDIEGGANVSLLLFNATEKSERLNLPDTLK 64 Query: 127 GQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQELRNGF 186 GQHTA+L AGHCLYSDMG+VLAAIT DTCGWHDSFGGVLNAEEV EKYGQGRYQELRNGF Sbjct: 65 GQHTAKLTAGHCLYSDMGKVLAAITADTCGWHDSFGGVLNAEEVAEKYGQGRYQELRNGF 124 Query: 187 HRNGADNLLVEMGKWNLDLQDLLMVVNLFSRVNVDAEGVFHFVPGNSKAGDFIELAAPMD 246 RNG DNLLVEMGKWNL+LQDLLM +NLFSRV+VDA G F F PGNS+AGD++EL APMD Sbjct: 125 FRNGTDNLLVEMGKWNLNLQDLLMNLNLFSRVDVDANGAFQFQPGNSQAGDYVELYAPMD 184 Query: 247 TLIILTALQHPMDPHPHYAPRPVRLAWLQTHSDDSTHACRHSRPENERAFHNTERFHL 304 TL++LTALQHPMDP+P YAP+PV+LAW + SD + CR S PEN RAFHNTER ++ Sbjct: 185 TLVVLTALQHPMDPNPQYAPKPVQLAWSKVESDGISVLCRTSLPENGRAFHNTERQYI 242 >ref|YP_001172522.1| hypothetical protein PST_2009 [Pseudomonas stutzeri A1501] gb|ABP79680.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 242 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 183/238 (76%), Positives = 211/238 (88%) Query: 67 LALQARLYEELLPGGGHTSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLK 126 LA++ LYEE +PGGGHTSF+LKRGQ LR++D+EGGANVS+M+LNAQ+ SERLNLPDTLK Sbjct: 5 LAIRPTLYEETVPGGGHTSFVLKRGQLLRLSDLEGGANVSLMLLNAQEKSERLNLPDTLK 64 Query: 127 GQHTARLQAGHCLYSDMGRVLAAITEDTCGWHDSFGGVLNAEEVREKYGQGRYQELRNGF 186 GQHTA+L AGHCLYSDMGRVLAAIT DTCGWHDSFGGVLNA+EV EKYGQGRYQELRNGF Sbjct: 65 GQHTAKLTAGHCLYSDMGRVLAAITADTCGWHDSFGGVLNADEVAEKYGQGRYQELRNGF 124 Query: 187 HRNGADNLLVEMGKWNLDLQDLLMVVNLFSRVNVDAEGVFHFVPGNSKAGDFIELAAPMD 246 RNG DNLLVEMGKWNL+LQDLLMV+NLFSRV+V A+G F F G+SKAGD+IEL APMD Sbjct: 125 FRNGTDNLLVEMGKWNLNLQDLLMVLNLFSRVDVTADGAFAFHQGHSKAGDYIELYAPMD 184 Query: 247 TLIILTALQHPMDPHPHYAPRPVRLAWLQTHSDDSTHACRHSRPENERAFHNTERFHL 304 TL+ILTALQHP+DP+P YAP+PV+L+W + SD + CR SRPEN RAFHNTER ++ Sbjct: 185 TLVILTALQHPLDPNPLYAPKPVQLSWHKVESDGISVLCRTSRPENGRAFHNTERLYI 242