BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1911.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777849.1| nitrate/sulfonate/bicarbonate ABC transporte... 412 e-113 gb|EGH79574.1| binding-protein dependent transport system inner ... 337 8e-91 ref|ZP_07264951.1| binding-protein dependent transport system in... 336 2e-90 ref|YP_237041.1| binding-protein dependent transport system inne... 336 2e-90 ref|ZP_08404688.1| TauC [Hylemonella gracilis ATCC 19624] >gi|33... 335 4e-90 >ref|YP_003777849.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65941.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 259/271 (95%), Positives = 266/271 (98%) Query: 1 MRFLNRHPGRSGQWLLTLLPFLILGLLYAFGSATRLADNPNDKLLPSLAQMVDAVRHMAF 60 MRFLNRHPGRSGQWLLTLLPFLIL LLYA GSATRLADNPNDKLLPSL QMVDAVRHMAF Sbjct: 1 MRFLNRHPGRSGQWLLTLLPFLILALLYAVGSATRLADNPNDKLLPSLMQMVDAVRHMAF 60 Query: 61 MEDPRTGDYLFWSDTLASLQRVLLGLGIAAVAGLVMGIANGIFPVLRAGFSPLLTVISMV 120 MEDPRTGDYLFW+DTLASLQRVLLGLGIAA+AGLV+GI NG+FPVLRAGFSPLLTV+SMV Sbjct: 61 MEDPRTGDYLFWADTLASLQRVLLGLGIAALAGLVLGIVNGVFPVLRAGFSPLLTVMSMV 120 Query: 121 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT 180 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT Sbjct: 121 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT 180 Query: 181 LVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 +VLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY Sbjct: 181 VVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 Query: 241 VVWITLLAWLMDWSLRAIHRRFFPWAEGGRA 271 VVWITLLAWLMDW LRA+HRRFFPWAEGGRA Sbjct: 241 VVWITLLAWLMDWLLRAVHRRFFPWAEGGRA 271 >gb|EGH79574.1| binding-protein dependent transport system inner membrane protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 271 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 194/271 (71%), Positives = 228/271 (84%) Query: 1 MRFLNRHPGRSGQWLLTLLPFLILGLLYAFGSATRLADNPNDKLLPSLAQMVDAVRHMAF 60 MR +NRHP R+G+ +L +LPF +L Y GSATRLA+NP+DKLLPS QM DAV+ MAF Sbjct: 1 MRLINRHPDRAGRLILVILPFALLLFAYFMGSATRLAENPSDKLLPSAVQMADAVKRMAF 60 Query: 61 MEDPRTGDYLFWSDTLASLQRVLLGLGIAAVAGLVMGIANGIFPVLRAGFSPLLTVISMV 120 + DPR+GDYL W D+ +SLQR+ +G GI+A+ GL +GIA GI P+ A SPLLTV+SMV Sbjct: 61 VADPRSGDYLLWQDSASSLQRLAIGFGISALLGLCLGIAAGILPLCGAPLSPLLTVLSMV 120 Query: 121 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT 180 PPLAILPILFIV GL ELSKVMLIVIG+TP+LARDLE R IP ELLIKAQTLGA++WT Sbjct: 121 PPLAILPILFIVFGLGELSKVMLIVIGITPILARDLEQRAREIPVELLIKAQTLGASTWT 180 Query: 181 LVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 L+LRV LPQ+L RLL++LRL LG+AWLFLI+AEAI++T GLGYRIFLVRRYLAMDVILPY Sbjct: 181 LILRVILPQLLPRLLIALRLVLGSAWLFLIAAEAIASTDGLGYRIFLVRRYLAMDVILPY 240 Query: 241 VVWITLLAWLMDWSLRAIHRRFFPWAEGGRA 271 VVWITLLAWLMDWSL+A+ RR FPW EG RA Sbjct: 241 VVWITLLAWLMDWSLKALTRRAFPWYEGARA 271 >ref|ZP_07264951.1| binding-protein dependent transport system inner membrane protein [Pseudomonas syringae pv. syringae 642] Length = 271 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 194/271 (71%), Positives = 228/271 (84%) Query: 1 MRFLNRHPGRSGQWLLTLLPFLILGLLYAFGSATRLADNPNDKLLPSLAQMVDAVRHMAF 60 MR +NRHP R+G+ +L +LPF +L Y GSATRLA+NP+DKLLPS QM DAV+ MAF Sbjct: 1 MRLINRHPDRAGRLILVILPFALLLFAYFMGSATRLAENPSDKLLPSAVQMADAVKRMAF 60 Query: 61 MEDPRTGDYLFWSDTLASLQRVLLGLGIAAVAGLVMGIANGIFPVLRAGFSPLLTVISMV 120 + DPR+GDYL W D+ +SLQR+ +GLGI+A+ GL +GIA GI P+ A SPLLTV+SMV Sbjct: 61 VADPRSGDYLLWQDSASSLQRLAIGLGISALLGLCLGIAAGIMPLCGAPLSPLLTVLSMV 120 Query: 121 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT 180 PPLAILPILFIV GL ELSKVMLIVIG+TP+LARDLE R IP ELLIKAQTLGA++WT Sbjct: 121 PPLAILPILFIVFGLGELSKVMLIVIGITPILARDLEQRAREIPVELLIKAQTLGASTWT 180 Query: 181 LVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 L+LRV LPQ+L RLL++LRL LG+AWLFLI+AEAI++T GLGYRIFLVRRYLAMDVILPY Sbjct: 181 LILRVILPQLLPRLLIALRLVLGSAWLFLIAAEAIASTDGLGYRIFLVRRYLAMDVILPY 240 Query: 241 VVWITLLAWLMDWSLRAIHRRFFPWAEGGRA 271 VVWITLLAWLMDW L+A+ RR FPW EG RA Sbjct: 241 VVWITLLAWLMDWGLKALTRRAFPWYEGARA 271 >ref|YP_237041.1| binding-protein dependent transport system inner membrane protein [Pseudomonas syringae pv. syringae B728a] gb|AAY39003.1| Binding-protein-dependent transport systems inner membrane component [Pseudomonas syringae pv. syringae B728a] gb|EGH41581.1| binding-protein dependent transport system inner membrane protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 271 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 194/271 (71%), Positives = 228/271 (84%) Query: 1 MRFLNRHPGRSGQWLLTLLPFLILGLLYAFGSATRLADNPNDKLLPSLAQMVDAVRHMAF 60 MR +NRHP R+G+ +L +LPF +L Y GSATRLA+NP+DKLLPS QM DAV+ MAF Sbjct: 1 MRLINRHPDRAGRLILVILPFALLLFAYFMGSATRLAENPSDKLLPSAVQMADAVKRMAF 60 Query: 61 MEDPRTGDYLFWSDTLASLQRVLLGLGIAAVAGLVMGIANGIFPVLRAGFSPLLTVISMV 120 + DPR+GDYL W D+ +SLQR+ +GLGI+A+ GL +GIA GI P+ A SPLLTV+SMV Sbjct: 61 VADPRSGDYLLWQDSASSLQRLAIGLGISALLGLCLGIAAGILPLCGAPLSPLLTVLSMV 120 Query: 121 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT 180 PPLAILPILFIV GL ELSKVMLIVIG+TP+LARDLE R IP ELLIKAQTLGA++WT Sbjct: 121 PPLAILPILFIVFGLGELSKVMLIVIGITPILARDLEQRAREIPVELLIKAQTLGASTWT 180 Query: 181 LVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 L+LRV LPQ+L RLL++LRL LG+AWLFLI+AEAI++T GLGYRIFLVRRYLAMDVILPY Sbjct: 181 LILRVILPQLLPRLLIALRLVLGSAWLFLIAAEAIASTDGLGYRIFLVRRYLAMDVILPY 240 Query: 241 VVWITLLAWLMDWSLRAIHRRFFPWAEGGRA 271 VVWITLLAWLMDW L+A+ RR FPW EG RA Sbjct: 241 VVWITLLAWLMDWGLKALTRRAFPWYEGARA 271 >ref|ZP_08404688.1| TauC [Hylemonella gracilis ATCC 19624] gb|EGI78126.1| TauC [Hylemonella gracilis ATCC 19624] Length = 271 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 204/270 (75%), Positives = 230/270 (85%) Query: 1 MRFLNRHPGRSGQWLLTLLPFLILGLLYAFGSATRLADNPNDKLLPSLAQMVDAVRHMAF 60 MRF+NR PGR G+WLL LLP ++L L+Y S+ RLADNP+DKLLP L QM DA+ MAF Sbjct: 1 MRFINRQPGRGGRWLLALLPLILLVLVYGIASSARLADNPDDKLLPGLTQMADAMGRMAF 60 Query: 61 MEDPRTGDYLFWSDTLASLQRVLLGLGIAAVAGLVMGIANGIFPVLRAGFSPLLTVISMV 120 D R+GDYL WSDT ASL R+ LGLGIAA+ GLV G+A G+FP+LRA SP++TV+SMV Sbjct: 61 EADKRSGDYLLWSDTAASLIRLGLGLGIAALTGLVFGVAAGVFPLLRAPLSPMMTVVSMV 120 Query: 121 PPLAILPILFIVMGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWT 180 PPLA+LPILFIV GLDELSKVMLIVIGV P+LARDLE R IP EL +KAQTLGANSWT Sbjct: 121 PPLAVLPILFIVFGLDELSKVMLIVIGVAPILARDLEQRAREIPQELFVKAQTLGANSWT 180 Query: 181 LVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 LVLRV LPQ+L+RLLVSLRL LG+AWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY Sbjct: 181 LVLRVVLPQLLSRLLVSLRLMLGSAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPY 240 Query: 241 VVWITLLAWLMDWSLRAIHRRFFPWAEGGR 270 VVWITLLAWLMDW LR ++R FPW+EGGR Sbjct: 241 VVWITLLAWLMDWGLRGLNRWLFPWSEGGR 270