BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1905.p         (170 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004235806.1| MarR family transcriptional regulator [Acido...   212   1e-53
ref|NP_519942.1| transcription regulator protein [Ralstonia sola...   210   5e-53
emb|CBJ38028.1| Transcriptional regulator, MarR family [Ralstoni...   209   1e-52
ref|ZP_03318381.1| hypothetical protein PROVALCAL_01312 [Provide...   167   3e-40
ref|ZP_05974241.2| transcription regulator protein [Providencia ...   165   2e-39

>ref|YP_004235806.1| MarR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gb|ADX47239.1| transcriptional regulator, MarR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 179

 Score =  212 bits (540), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 118/166 (71%), Positives = 135/166 (81%), Gaps = 8/166 (4%)

Query: 3   LPIAPGDGVSLLLSEEEAARGMAKSKAFVDNYLPALLGQAWQLLSTQFHAVVEAHGLSVL 62
           LP AP  G        E A GMAK+K FVDNYLPALLGQAW L+ST+FHA VE  GLSVL
Sbjct: 20  LPAAPDPG--------EVACGMAKTKDFVDNYLPALLGQAWHLVSTEFHATVEQSGLSVL 71

Query: 63  EWRVLSILASNGGMSISALADAAVSKQPTVTRLLLRLEAQGHVERTTSQDDRRFTLVRVT 122
           EWRVLS LAS G M+ISALA   VSKQPTVTRLLLR+EAQGHV+R TS DDRR+TLVRVT
Sbjct: 72  EWRVLSTLASQGAMTISALAQTTVSKQPTVTRLLLRMEAQGHVDRATSLDDRRYTLVRVT 131

Query: 123 RNGRRLVSGLIELAEQHEREVLASMNPQKVEMLKELLQEIITRYRP 168
           R+GRRLV+GLIE AE+HER +LA ++P+KVE+LKELL E+I R+RP
Sbjct: 132 RSGRRLVAGLIEQAERHERAILAPLDPRKVEVLKELLHELIARHRP 177


>ref|NP_519942.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 emb|CAD15523.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
          Length = 147

 Score =  210 bits (535), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 112/146 (76%), Positives = 131/146 (89%)

Query: 24  MAKSKAFVDNYLPALLGQAWQLLSTQFHAVVEAHGLSVLEWRVLSILASNGGMSISALAD 83
           M ++KAFVD+YLPALLG+AW L+STQFHAVVE HGLSVLEWRVLS LASNG MSIS LA+
Sbjct: 1   MTRTKAFVDDYLPALLGRAWHLVSTQFHAVVEQHGLSVLEWRVLSTLASNGPMSISVLAE 60

Query: 84  AAVSKQPTVTRLLLRLEAQGHVERTTSQDDRRFTLVRVTRNGRRLVSGLIELAEQHEREV 143
            AVSKQPTVTRLLLRLEAQGHVER+TS+DDRR+TLVRVTRNGRRLVSGLI LAE+HER +
Sbjct: 61  KAVSKQPTVTRLLLRLEAQGHVERSTSRDDRRYTLVRVTRNGRRLVSGLIALAEEHERAI 120

Query: 144 LASMNPQKVEMLKELLQEIITRYRPQ 169
           L  M+ QK++ LK++L E+I+R+ PQ
Sbjct: 121 LEPMSQQKIDTLKDILHELISRHAPQ 146


>emb|CBJ38028.1| Transcriptional regulator, MarR family [Ralstonia solanacearum
           CMR15]
          Length = 147

 Score =  209 bits (531), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 110/146 (75%), Positives = 129/146 (88%)

Query: 24  MAKSKAFVDNYLPALLGQAWQLLSTQFHAVVEAHGLSVLEWRVLSILASNGGMSISALAD 83
           M ++KAFVD+YLPALLG+AW L+STQFH VVE HGLSVLEWRVLS LASNG MSIS LA+
Sbjct: 1   MTRTKAFVDDYLPALLGRAWHLVSTQFHTVVEQHGLSVLEWRVLSTLASNGPMSISVLAE 60

Query: 84  AAVSKQPTVTRLLLRLEAQGHVERTTSQDDRRFTLVRVTRNGRRLVSGLIELAEQHEREV 143
            AVSKQPTVTRLLLRLEAQGHVER+TS+DDRR+TLVRVTRNGRRLVSGLI LAE+HER +
Sbjct: 61  KAVSKQPTVTRLLLRLEAQGHVERSTSRDDRRYTLVRVTRNGRRLVSGLIALAEEHERSI 120

Query: 144 LASMNPQKVEMLKELLQEIITRYRPQ 169
           L  ++ QK++ LK++L E+I R+ PQ
Sbjct: 121 LEPLSQQKIDTLKDILHELINRHSPQ 146


>ref|ZP_03318381.1| hypothetical protein PROVALCAL_01312 [Providencia alcalifaciens DSM
           30120]
 gb|EEB46588.1| hypothetical protein PROVALCAL_01312 [Providencia alcalifaciens DSM
           30120]
          Length = 176

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/148 (63%), Positives = 115/148 (77%), Gaps = 2/148 (1%)

Query: 24  MAKSKAFVDNYLPALLGQAWQLLSTQFHAVVEAHGLSVLEWRVLSILASNGGMSISALAD 83
           M KSK FVDNYLPALLGQAW L+S++FHAVVEA+GLSVLEWRVLS LA+NG M I+ L+ 
Sbjct: 27  MPKSKVFVDNYLPALLGQAWMLVSSEFHAVVEANGLSVLEWRVLSTLANNGSMGITELSQ 86

Query: 84  AAVSKQPTVTRLLLRLEAQGHVER--TTSQDDRRFTLVRVTRNGRRLVSGLIELAEQHER 141
             VSKQPT+TR+L RLE QGHV R    S  DRR TLV VT +G  LV GL+  AE+HER
Sbjct: 87  KTVSKQPTITRVLQRLEQQGHVIRHNNHSGSDRRVTLVSVTSSGVELVEGLLVAAEEHER 146

Query: 142 EVLASMNPQKVEMLKELLQEIITRYRPQ 169
           +VLA +  +K +MLK++LQE+I R+ P+
Sbjct: 147 QVLAPLGARKSKMLKQVLQELIDRHSPE 174


>ref|ZP_05974241.2| transcription regulator protein [Providencia rustigianii DSM 4541]
 gb|EFB70837.1| transcription regulator protein [Providencia rustigianii DSM 4541]
          Length = 176

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 114/148 (77%), Gaps = 2/148 (1%)

Query: 24  MAKSKAFVDNYLPALLGQAWQLLSTQFHAVVEAHGLSVLEWRVLSILASNGGMSISALAD 83
           M +SK FVDNYLPALLGQAW L+S++FHAVVEAHGLSVLEWRVLS LA+NG M I+ L+ 
Sbjct: 27  MPESKVFVDNYLPALLGQAWMLVSSEFHAVVEAHGLSVLEWRVLSTLANNGSMGITELSQ 86

Query: 84  AAVSKQPTVTRLLLRLEAQGHVERTTSQ--DDRRFTLVRVTRNGRRLVSGLIELAEQHER 141
             VSKQPT+TR+L RLE QGHV R  +    DRR TLV VT +G  LV GL+  AE+HE+
Sbjct: 87  KTVSKQPTITRVLQRLEQQGHVIRHNNHTGSDRRVTLVSVTSSGVALVEGLLVAAEEHEK 146

Query: 142 EVLASMNPQKVEMLKELLQEIITRYRPQ 169
            VLA +  +K +MLK++LQE+I R+ P+
Sbjct: 147 LVLAPLGTRKSKMLKQILQELIDRHSPE 174