BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1898.p (502 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBJ38035.1| putative indolepyruvate:ferredoxin oxidoreductas... 693 0.0 ref|NP_519949.1| indolepyruvate oxidoreductase subunit B [Ralsto... 684 0.0 ref|YP_002942582.1| indolepyruvate oxidoreductase subunit B [Var... 675 0.0 ref|YP_004235813.1| Pyruvate/ketoisovalerate oxidoreductase [Aci... 675 0.0 ref|ZP_03318374.1| hypothetical protein PROVALCAL_01305 [Provide... 643 0.0 >emb|CBJ38035.1| putative indolepyruvate:ferredoxin oxidoreductase [Ralstonia solanacearum CMR15] Length = 503 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 373/502 (74%), Positives = 421/502 (83%), Gaps = 4/502 (0%) Query: 1 MSPKPIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG 60 M+ +PIKIAILAMGGEGGGVLADWIVDLGE+NGYFAQTTSVPGVAQRTGATIYYVELFPG Sbjct: 1 MTVEPIKIAILAMGGEGGGVLADWIVDLGEANGYFAQTTSVPGVAQRTGATIYYVELFPG 60 Query: 61 AGQPGARTPVLALMPMPGDVDVVLASELMEAGRAVQRGLVTPDRTTLLSSTHRVYSIGER 120 A AR PVLALMPMPGDVDVVLASELMEAGRAVQRG VT +RTTL++S+HRVYSI E+ Sbjct: 61 AADAPARAPVLALMPMPGDVDVVLASELMEAGRAVQRGFVTSERTTLITSSHRVYSIAEK 120 Query: 121 TAMGDGRVDSDALVEHARKAAKRFVSFDMAESAERVGSVISAVLFGSLCGTGVLPFSRAQ 180 +AMGDGRVD+DAL AR+AA+ F SFDMAE+AER GSV+SAVLFG+L G+GVLPFSR Q Sbjct: 121 SAMGDGRVDNDALARQAREAARHFFSFDMAEAAERAGSVVSAVLFGALSGSGVLPFSREQ 180 Query: 181 FEATIERGGVGVKPSLKAFAVGHDQARQAEAAAPGASAEAAQFKPVQLAAIADQQVVR-L 239 FEATIERGG GVKPSLKAF G+ +A+ + P +A A+Q P A V L Sbjct: 181 FEATIERGGGGVKPSLKAFDAGYAKAKPGQ---PDGTAAASQPTPADAAPAPRDPAVAAL 237 Query: 240 VQQAQAYPDPVAAIAVEGVRRLIDYQDPDYAALYLQRLAALATAPGGQDTELLAESARYL 299 +++A+ + V+AIA+EGVRRLIDYQDP YA+LYL RL ALATAPGG +LL+E+AR+L Sbjct: 238 LERARRFVPQVSAIAIEGVRRLIDYQDPAYASLYLDRLDALATAPGGSQPDLLSETARHL 297 Query: 300 ALWMSYEDTIRVADIKTRSSRFNRVRSDVRAKEEQLVDINEFMHPRLEEICETLPAGLGR 359 ALWMSYEDTIRVAD+KTR SRF RVR +VRAK +QL+ INEFMHPR+EEICETLPAGLGR Sbjct: 298 ALWMSYEDTIRVADLKTRGSRFERVRGEVRAKSDQLLQINEFMHPRIEEICETLPAGLGR 357 Query: 360 WLARPHWAHRLVRRYTQEGRVIKTSSLPGFLLLYGLSRWRRFRRVTLRYAQETERIERWW 419 WLARPHWAHRLV R T++GRV+KTSSL GFLLLY L+RW R+RR TLRYA E RIE W Sbjct: 358 WLARPHWAHRLVARCTRQGRVVKTSSLGGFLLLYTLARWGRWRRTTLRYALENSRIEAWL 417 Query: 420 QRVTALAAVNPALALEVAQCQRLVKGYSDTHVRGLRNYETLMQVVDRHARALAPAVLREL 479 QRV ALAA+NPALALE AQCQRLVKGY DTH RGL+NYETLM VVDRHA L P LREL Sbjct: 418 QRVRALAAINPALALEAAQCQRLVKGYGDTHARGLKNYETLMTVVDRHAGTLPPQTLREL 477 Query: 480 RDAALADEHGHKLRASLQQHAL 501 RDAALADEHGH+LRA LQ+HA Sbjct: 478 RDAALADEHGHQLRACLQRHAF 499 >ref|NP_519949.1| indolepyruvate oxidoreductase subunit B [Ralstonia solanacearum GMI1000] emb|CAD15530.1| putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 503 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 366/501 (73%), Positives = 415/501 (82%), Gaps = 2/501 (0%) Query: 1 MSPKPIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG 60 M+ +PIKIAILAMGGEGGGVLADWIVDLGE+NGYFAQTTSVPGVAQRTGATIYYVELFPG Sbjct: 1 MTVEPIKIAILAMGGEGGGVLADWIVDLGEANGYFAQTTSVPGVAQRTGATIYYVELFPG 60 Query: 61 AGQPGARTPVLALMPMPGDVDVVLASELMEAGRAVQRGLVTPDRTTLLSSTHRVYSIGER 120 A AR PVLALMPMPGDVDVVLASELMEAGRAVQRG VT +RTTL++S+HRVYSI E+ Sbjct: 61 AADAPARAPVLALMPMPGDVDVVLASELMEAGRAVQRGFVTRERTTLIASSHRVYSIAEK 120 Query: 121 TAMGDGRVDSDALVEHARKAAKRFVSFDMAESAERVGSVISAVLFGSLCGTGVLPFSRAQ 180 +AMGDGRVDSD L AR+AA+ F SFDMAE+AER GSV+SAVLFG+L G+GVLPFSR Q Sbjct: 121 SAMGDGRVDSDGLARQAREAARHFFSFDMAEAAERAGSVVSAVLFGALSGSGVLPFSREQ 180 Query: 181 FEATIERGGVGVKPSLKAFAVGHDQARQAEAAAPGASAEAAQFKPVQLAAIADQQVVRLV 240 FEATIERGGVGVKPSLKAF G+ +AR + G + A D V L+ Sbjct: 181 FEATIERGGVGVKPSLKAFDAGYARARPGQP--DGTADAPRPMPADAAPAPRDPAVAVLL 238 Query: 241 QQAQAYPDPVAAIAVEGVRRLIDYQDPDYAALYLQRLAALATAPGGQDTELLAESARYLA 300 ++A+ + V+AIA+EGVRRLIDYQDP YA LYL RL AL+ APGG +LL E+AR+LA Sbjct: 239 ERARRFAPQVSAIAIEGVRRLIDYQDPAYAGLYLDRLDALSAAPGGSQPDLLGETARHLA 298 Query: 301 LWMSYEDTIRVADIKTRSSRFNRVRSDVRAKEEQLVDINEFMHPRLEEICETLPAGLGRW 360 LWMSYEDTIRVAD+KTR SRF RVR +VRAK +QL+ INEFMHPR+EEICETLPAGLGRW Sbjct: 299 LWMSYEDTIRVADLKTRGSRFERVRGEVRAKSDQLLQINEFMHPRIEEICETLPAGLGRW 358 Query: 361 LARPHWAHRLVRRYTQEGRVIKTSSLPGFLLLYGLSRWRRFRRVTLRYAQETERIERWWQ 420 LARPHWAHRLV R+T++GRV+KTSSL GFLLLY L+RW R+RR TLRYA E RIE W + Sbjct: 359 LARPHWAHRLVARFTRQGRVVKTSSLGGFLLLYTLARWGRWRRTTLRYALENARIEAWLR 418 Query: 421 RVTALAAVNPALALEVAQCQRLVKGYSDTHVRGLRNYETLMQVVDRHARALAPAVLRELR 480 RV A+AA+NPALALE AQCQRLVKGY DTH RGL++YETLM VVDRHA L P LRELR Sbjct: 419 RVRAVAAINPALALETAQCQRLVKGYGDTHARGLKHYETLMTVVDRHADTLPPQTLRELR 478 Query: 481 DAALADEHGHKLRASLQQHAL 501 DAALADEHG++LRA LQ+HA Sbjct: 479 DAALADEHGNQLRACLQRHAF 499 >ref|YP_002942582.1| indolepyruvate oxidoreductase subunit B [Variovorax paradoxus S110] gb|ACS17316.1| putative indolepyruvate oxidoreductase subunit B [Variovorax paradoxus S110] Length = 499 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 365/501 (72%), Positives = 413/501 (82%), Gaps = 4/501 (0%) Query: 1 MSPKPIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG 60 M +PIKIAILAMGGEGGGVLADWIVDLGE NG+FAQTTSVPGVAQRTGAT+YYVELFPG Sbjct: 1 MRHEPIKIAILAMGGEGGGVLADWIVDLGEHNGWFAQTTSVPGVAQRTGATVYYVELFPG 60 Query: 61 AGQPGARTPVLALMPMPGDVDVVLASELMEAGRAVQRGLVTPDRTTLLSSTHRVYSIGER 120 A +PGAR PVL+ P+PGD+D+VLASELMEAGRAVQRG VTPD TTLLSSTHRVYSI E+ Sbjct: 61 ASEPGARAPVLSQAPLPGDLDIVLASELMEAGRAVQRGFVTPDNTTLLSSTHRVYSIAEK 120 Query: 121 TAMGDGRVDSDALVEHARKAAKRFVSFDMAESAERVGSVISAVLFGSLCGTGVLPFSRAQ 180 +AMGDGRVDSD L+ R+AAKRFVSF+M + AER GSVISAVLFG+L GTGVLPFSR Q Sbjct: 121 SAMGDGRVDSDTLLRQTRRAAKRFVSFNMEQVAERTGSVISAVLFGALSGTGVLPFSRVQ 180 Query: 181 FEATIERGGVGVKPSLKAFAVGHDQARQAEAAAPGASAEAAQFKPVQLAAIADQQVVRLV 240 FE TIERGGVGVKPSLKAFA G +A A A P +A A L + LV Sbjct: 181 FEQTIERGGVGVKPSLKAFAAGFAEAGDALAGKPPQAAAAGG----ALVWPRHPALDPLV 236 Query: 241 QQAQAYPDPVAAIAVEGVRRLIDYQDPDYAALYLQRLAALATAPGGQDTELLAESARYLA 300 ++AQA P V+AIA+EG+RRL+DYQDP YA LYL RLA LA APGG DTELL E+ARYLA Sbjct: 237 ERAQALPAGVSAIALEGIRRLVDYQDPAYARLYLDRLADLAAAPGGHDTELLRETARYLA 296 Query: 301 LWMSYEDTIRVADIKTRSSRFNRVRSDVRAKEEQLVDINEFMHPRLEEICETLPAGLGRW 360 LWMSYEDT+RVAD+KTR SRF+RVR +VR++ +Q+++I EFMHPRLEEICETLPAGLG W Sbjct: 297 LWMSYEDTMRVADLKTRGSRFDRVRDEVRSQGDQVLEIEEFMHPRLEEICETLPAGLGHW 356 Query: 361 LARPHWAHRLVRRYTQEGRVIKTSSLPGFLLLYGLSRWRRFRRVTLRYAQETERIERWWQ 420 L+RPH +R V R+TQ+GRVI+TSSL GFLLLYGL+RW R+RR TLRYA E RIE W Sbjct: 357 LSRPHAVNRFVARFTQQGRVIRTSSLTGFLLLYGLARWGRWRRTTLRYAIENGRIEAWLA 416 Query: 421 RVTALAAVNPALALEVAQCQRLVKGYSDTHVRGLRNYETLMQVVDRHARALAPAVLRELR 480 R+ LAAVNP LALE A+CQRLVKGYSDTH RGLRNYETLM VVDRH ALAP L+ELR Sbjct: 417 RLRVLAAVNPQLALEAARCQRLVKGYSDTHARGLRNYETLMSVVDRHPHALAPLTLKELR 476 Query: 481 DAALADEHGHKLRASLQQHAL 501 DAALADEHGH+L A L++ AL Sbjct: 477 DAALADEHGHQLDACLKRLAL 497 >ref|YP_004235813.1| Pyruvate/ketoisovalerate oxidoreductase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47246.1| Pyruvate/ketoisovalerate oxidoreductase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 505 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 376/501 (75%), Positives = 422/501 (84%), Gaps = 3/501 (0%) Query: 1 MSPKPIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG 60 M+ +PIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG Sbjct: 1 MTTEPIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG 60 Query: 61 AGQPGARTPVLALMPMPGDVDVVLASELMEAGRAVQRGLVTPDRTTLLSSTHRVYSIGER 120 A QPGAR PVLA PMPGDVD+VLASELMEAGRAVQRGLVTPDRT ++STHRVYSI E+ Sbjct: 61 ADQPGARVPVLAQAPMPGDVDIVLASELMEAGRAVQRGLVTPDRTAFVTSTHRVYSIAEK 120 Query: 121 TAMGDGRVDSDALVEHARKAAKRFVSFDMAESAERVGSVISAVLFGSLCGTGVLPFSRAQ 180 +AMGDGRVD DAL+ AR+AA+RFV+FDMA +AER GSVISAVLFG+LCG GVLPF+R Q Sbjct: 121 SAMGDGRVDGDALLAQARRAAQRFVAFDMAAAAERTGSVISAVLFGALCGAGVLPFNRQQ 180 Query: 181 FEATIERGGVGVKPSLKAFAVGHDQARQAEAAAPGASAEAAQFKPVQLAAIADQQVVRLV 240 FEATIERGGVGVKPSLKAFAVG++Q+RQ A +++ Q +P +V RLV Sbjct: 181 FEATIERGGVGVKPSLKAFAVGYEQSRQ--EAPERIASDKPQPRPAASVQPRHPEVARLV 238 Query: 241 QQAQAYPDPVAAIAVEGVRRLIDYQDPDYAALYLQRLAALATAPGGQDTELLAESARYLA 300 +AQAYP A IAVEGVRRLIDYQD YAALYLQRL ALA A G D LLAE+AR+LA Sbjct: 239 ARAQAYPAEAADIAVEGVRRLIDYQDIAYAALYLQRLDALAAAR-GTDATLLAETARHLA 297 Query: 301 LWMSYEDTIRVADIKTRSSRFNRVRSDVRAKEEQLVDINEFMHPRLEEICETLPAGLGRW 360 LWMSYED IRVAD+KTR+SRF RV +V AK++Q++ I EFMHPRLEEICETLPAGLGRW Sbjct: 298 LWMSYEDVIRVADLKTRASRFERVTDEVHAKQDQVLHIQEFMHPRLEEICETLPAGLGRW 357 Query: 361 LARPHWAHRLVRRYTQEGRVIKTSSLPGFLLLYGLSRWRRFRRVTLRYAQETERIERWWQ 420 LARPH HRLV R+T+EGR+++TSSL GFL+LY L+RWRR RR TLRYAQETERIE W Sbjct: 358 LARPHAVHRLVGRFTREGRIVRTSSLGGFLMLYLLARWRRGRRSTLRYAQETERIETWLA 417 Query: 421 RVTALAAVNPALALEVAQCQRLVKGYSDTHVRGLRNYETLMQVVDRHARALAPAVLRELR 480 R+ LAA++PALALE A+CQRLVKGYSDTH RGL+NYETLM VVDRHA LAPA LR LR Sbjct: 418 RIHRLAAIDPALALEAARCQRLVKGYSDTHARGLKNYETLMAVVDRHAATLAPATLRTLR 477 Query: 481 DAALADEHGHKLRASLQQHAL 501 DAALADEHG KL+ SL+ H L Sbjct: 478 DAALADEHGVKLQGSLRAHGL 498 >ref|ZP_03318374.1| hypothetical protein PROVALCAL_01305 [Providencia alcalifaciens DSM 30120] gb|EEB46581.1| hypothetical protein PROVALCAL_01305 [Providencia alcalifaciens DSM 30120] Length = 502 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 333/503 (66%), Positives = 394/503 (78%), Gaps = 7/503 (1%) Query: 1 MSPKPIKIAILAMGGEGGGVLADWIVDLGESNGYFAQTTSVPGVAQRTGATIYYVELFPG 60 M+ +PIKIAILAMGGEGGGVLADWIV+LGE NGYFAQTTSVPGVAQRTGATIYYVELFPG Sbjct: 6 MTLQPIKIAILAMGGEGGGVLADWIVNLGEENGYFAQTTSVPGVAQRTGATIYYVELFPG 65 Query: 61 AGQPGARTPVLALMPMPGDVDVVLASELMEAGRAVQRGLVTPDRTTLLSSTHRVYSIGER 120 A P +PVLALMPMPGDVDVVLASELMEAGRAVQRG VT +RTTL+SSTHRVYSI E+ Sbjct: 66 ADNPDTPSPVLALMPMPGDVDVVLASELMEAGRAVQRGFVTSERTTLISSTHRVYSIAEK 125 Query: 121 TAMGDGRVDSDALVEHARKAAKRFVSFDMAESAERVGSVISAVLFGSLCGTGVLPFSRAQ 180 +AMGDGRVDS AL+ HA +AA++F+ FDMA++A+ GSVISAVLFG+L G+GVLPFSR Q Sbjct: 126 SAMGDGRVDSQALIRHAGQAARQFIHFDMAQAAQESGSVISAVLFGALFGSGVLPFSREQ 185 Query: 181 FEATIERGGVGVKPSLKAFAVGHDQARQAEAAAPGASAEAAQFKPVQLAAIADQQVVRLV 240 FE TI RGGVGVKPSL+AF +G ++A Q E S++ + P ++ V L+ Sbjct: 186 FEETIVRGGVGVKPSLRAFTLGAEKAAQPEETYQAESSQLIEKTP------KNKHVAVLL 239 Query: 241 QQAQA-YPDPVAAIAVEGVRRLIDYQDPDYAALYLQRLAALATAPGGQDTELLAESARYL 299 + ++ +PD V +A+EGVRRLIDYQDP YA YL RL AL GG D L R+L Sbjct: 240 ARIESQFPDHVHYLAIEGVRRLIDYQDPAYAESYLNRLQALFAQKGGDDPRLQRALVRHL 299 Query: 300 ALWMSYEDTIRVADIKTRSSRFNRVRSDVRAKEEQLVDINEFMHPRLEEICETLPAGLGR 359 ALWMSYEDTIRVAD+K R SRF RVRS+V+AK+ QL+DINEFMHPR+EEICETLP LG Sbjct: 300 ALWMSYEDTIRVADLKIRDSRFARVRSEVQAKDNQLLDINEFMHPRIEEICETLPKSLGN 359 Query: 360 WLARPHWAHRLVRRYTQEGRVIKTSSLPGFLLLYGLSRWRRFRRVTLRYAQETERIERWW 419 WL +PHW H+ VR+ TQ+GR I TSSL GFL LY L+ WRR RR TLRY E RIE+W Sbjct: 360 WLMKPHWIHKAVRKLTQKGRTITTSSLWGFLQLYALAAWRRGRRSTLRYQLENNRIEKWL 419 Query: 420 QRVTALAAVNPALALEVAQCQRLVKGYSDTHVRGLRNYETLMQVVDRHARALAPAVLREL 479 VT A NPALA E+AQCQR+VKGYSDTH RGLRN++ LM++V+RH LAP LREL Sbjct: 420 DAVTQAAKSNPALATEIAQCQRVVKGYSDTHARGLRNFQILMEIVERHGSQLAPINLREL 479 Query: 480 RDAALADEHGHKLRASLQQHALQ 502 R+AALADEHG++L+ Q+ A++ Sbjct: 480 REAALADEHGNELKKCRQRLAME 502