BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1896.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_519953.1| transcription regulator protein [Ralstonia sola... 488 e-136 emb|CBJ38037.1| putative transcription regulator protein, araC f... 486 e-135 ref|YP_004235816.1| AraC family transcriptional regulator [Acido... 483 e-134 ref|YP_003978469.1| AraC family transcriptional regulator [Achro... 412 e-113 gb|EGP44415.1| AraC family regulatory helix-turn-helix protein 1... 407 e-111 >ref|NP_519953.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD15534.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 342 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 241/325 (74%), Positives = 279/325 (85%), Gaps = 7/325 (2%) Query: 15 PMPASVERLLNGSNKLLFASSDLDEVRSMVGRVMKPHRLDLTGQGERLDARMHYTSLGDL 74 P P + ERLL FAS+DLDE+RSMVGRVMKPHRL L G +RLDARMHYT LGD+ Sbjct: 23 PFPCTPERLL-------FASADLDEIRSMVGRVMKPHRLALVGGADRLDARMHYTPLGDI 75 Query: 75 SVSRLRYGSAVQIEPGSLDSFFLVQMPLYGMARIESGAQHIDSSAELASVLSPQEATRMT 134 S+SRLRYG+AV+IEPG LDSFFLVQMP+ G A +ESGAQHIDS ++ASVLSP+E T+M Sbjct: 76 SLSRLRYGAAVEIEPGPLDSFFLVQMPISGSAEVESGAQHIDSGPDVASVLSPEEGTKMR 135 Query: 135 WMAGTDQLMLRLSRSLVERTLVGYLGHPLNEPLRFELGFRWRECAPWQCMLSYLIDCTLQ 194 W AG +QLMLRLSRSLVERTLVG+ GHPL +PLRFELGF WR CA W+C+LSYLIDC+ Q Sbjct: 136 WSAGNEQLMLRLSRSLVERTLVGHFGHPLEQPLRFELGFEWRGCAQWRCLLSYLIDCSTQ 195 Query: 195 HPDLAMHKIVVSQIEQLAASILVTSHRHNHCEDAPARRSTILPRHVRRAQDFLEAHAHEP 254 DLA HK+V++QIEQLAAS+L+ SH+HN+ E AP+RR TILPRHVRRAQD+L+AHAHEP Sbjct: 196 GLDLAQHKLVIAQIEQLAASVLLASHQHNYSEAAPSRRGTILPRHVRRAQDYLQAHAHEP 255 Query: 255 VTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAELMSGDSNHVAGVALRW 314 V A+QLAQ GVSVRSLY GFK+FLGVSPM YLRDLRMER R ELMSG++ +VAGVALRW Sbjct: 256 VCADQLAQVVGVSVRSLYTGFKEFLGVSPMHYLRDLRMERTRTELMSGEATNVAGVALRW 315 Query: 315 GFAHMGRFSNEYKQRYGESPSKTLR 339 GFAHMGRFSN+YKQRYGE+PS+TLR Sbjct: 316 GFAHMGRFSNDYKQRYGETPSQTLR 340 >emb|CBJ38037.1| putative transcription regulator protein, araC family [Ralstonia solanacearum CMR15] Length = 342 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 240/325 (73%), Positives = 279/325 (85%), Gaps = 7/325 (2%) Query: 15 PMPASVERLLNGSNKLLFASSDLDEVRSMVGRVMKPHRLDLTGQGERLDARMHYTSLGDL 74 P P + ERLL FAS+DLDE+RSMVGRVMKPHRL L G +RLDARMHYT LGD+ Sbjct: 23 PFPCTPERLL-------FASADLDEIRSMVGRVMKPHRLALAGSADRLDARMHYTPLGDI 75 Query: 75 SVSRLRYGSAVQIEPGSLDSFFLVQMPLYGMARIESGAQHIDSSAELASVLSPQEATRMT 134 S+SRLRYG+AV+IEPG LDSFFLVQMP+ G A +ESGAQHIDS ++ASVLSP+E T+M Sbjct: 76 SLSRLRYGAAVEIEPGPLDSFFLVQMPISGSAEVESGAQHIDSGPDVASVLSPEEGTKMR 135 Query: 135 WMAGTDQLMLRLSRSLVERTLVGYLGHPLNEPLRFELGFRWRECAPWQCMLSYLIDCTLQ 194 W AG +QLMLRLSRSLVERTLVG+ GHPL +PLRF+LGF WR CA W+C+LSYLIDC+ Q Sbjct: 136 WSAGNEQLMLRLSRSLVERTLVGHFGHPLEQPLRFDLGFEWRGCAQWRCLLSYLIDCSTQ 195 Query: 195 HPDLAMHKIVVSQIEQLAASILVTSHRHNHCEDAPARRSTILPRHVRRAQDFLEAHAHEP 254 DLA HK+V++QIEQLAAS+L+ SH+HN+ E AP+RR TILPRHVRRAQD+L+AHAHEP Sbjct: 196 GLDLAQHKLVIAQIEQLAASVLLASHQHNYSEAAPSRRGTILPRHVRRAQDYLQAHAHEP 255 Query: 255 VTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAELMSGDSNHVAGVALRW 314 V A+QLAQ GVSVRSLY GFK+FLGVSPM YLRDLRMER R ELMSG++ +VAGVALRW Sbjct: 256 VCADQLAQVVGVSVRSLYTGFKEFLGVSPMHYLRDLRMERTRTELMSGEATNVAGVALRW 315 Query: 315 GFAHMGRFSNEYKQRYGESPSKTLR 339 GFAHMGRFSN+YKQRYGE+PS+TLR Sbjct: 316 GFAHMGRFSNDYKQRYGETPSQTLR 340 >ref|YP_004235816.1| AraC family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47249.1| transcriptional regulator, AraC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 341 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 237/341 (69%), Positives = 287/341 (84%) Query: 1 MMNVLHSDPSTGRMPMPASVERLLNGSNKLLFASSDLDEVRSMVGRVMKPHRLDLTGQGE 60 M++ ++ + + MP ++ER LLFAS+D+DE RSMVGRVMKPHRL GE Sbjct: 1 MLSTMNPASALRQPAMPLAIERFSGAPEHLLFASADIDETRSMVGRVMKPHRLAQAAPGE 60 Query: 61 RLDARMHYTSLGDLSVSRLRYGSAVQIEPGSLDSFFLVQMPLYGMARIESGAQHIDSSAE 120 RLDARMHY SLGD+SVSRLRYG+AV+I+PG L+SFFLVQMPL G ARI+SG + ++S Sbjct: 61 RLDARMHYVSLGDVSVSRLRYGAAVEIQPGPLESFFLVQMPLSGHARIDSGGRQVESGPG 120 Query: 121 LASVLSPQEATRMTWMAGTDQLMLRLSRSLVERTLVGYLGHPLNEPLRFELGFRWRECAP 180 ASVLSP + TRM W +GTDQLMLR++R+ VERTLVG+LG PL+EPLRFELGF W++CAP Sbjct: 121 TASVLSPNDDTRMQWASGTDQLMLRIARAQVERTLVGHLGRPLDEPLRFELGFHWQDCAP 180 Query: 181 WQCMLSYLIDCTLQHPDLAMHKIVVSQIEQLAASILVTSHRHNHCEDAPARRSTILPRHV 240 W+C+LSYL+DC Q+PDL+ +K+VV+QIEQLA IL+TSH+HNH E APARRSTILPRHV Sbjct: 181 WRCLLSYLLDCATQYPDLSQNKLVVAQIEQLACLILLTSHQHNHSETAPARRSTILPRHV 240 Query: 241 RRAQDFLEAHAHEPVTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAELM 300 RRAQD+L+AHAHEPV EQLA+ AGVSVRSLYAGFK+FLGVSPMQYLRDLRME R EL+ Sbjct: 241 RRAQDYLQAHAHEPVCVEQLAEVAGVSVRSLYAGFKEFLGVSPMQYLRDLRMEHVRTELL 300 Query: 301 SGDSNHVAGVALRWGFAHMGRFSNEYKQRYGESPSKTLRTH 341 G++++VAG+ALRWGFAH+GRFSNEYKQRYGESPS+TLR H Sbjct: 301 GGEASNVAGIALRWGFAHLGRFSNEYKQRYGESPSQTLRRH 341 >ref|YP_003978469.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15754.1| bacterial regulatory helix-turn-helix protein, AraC family protein 14 [Achromobacter xylosoxidans A8] Length = 342 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 206/339 (60%), Positives = 260/339 (76%) Query: 1 MMNVLHSDPSTGRMPMPASVERLLNGSNKLLFASSDLDEVRSMVGRVMKPHRLDLTGQGE 60 M++ S ST +E +L + LFAS DLDE RSMVGRVM+PH L + G + Sbjct: 1 MLDTTQSATSTSWPTAGPRIESVLGLPAQQLFASGDLDEARSMVGRVMRPHHLGVVGALQ 60 Query: 61 RLDARMHYTSLGDLSVSRLRYGSAVQIEPGSLDSFFLVQMPLYGMARIESGAQHIDSSAE 120 RLDARMH+ LG++S++RLRYG+ V+I PG L+ FFLVQMPL G ARI SG Q +DS+ + Sbjct: 61 RLDARMHHQPLGEVSLNRLRYGANVEIRPGPLEDFFLVQMPLSGCARISSGPQQVDSTPD 120 Query: 121 LASVLSPQEATRMTWMAGTDQLMLRLSRSLVERTLVGYLGHPLNEPLRFELGFRWRECAP 180 +ASV+SP + M W DQ MLR+ RSL+ERTLVG+LG L+ PLRF+LGFRWREC Sbjct: 121 VASVVSPDDDLAMRWAEDNDQFMLRVGRSLLERTLVGHLGCALDRPLRFQLGFRWRECPA 180 Query: 181 WQCMLSYLIDCTLQHPDLAMHKIVVSQIEQLAASILVTSHRHNHCEDAPARRSTILPRHV 240 W+C++SYL+DC+ QH +LA HK++V Q+EQL A+ L+++ HN+ P RR +LPRHV Sbjct: 181 WRCLMSYLLDCSTQHANLAQHKLIVHQMEQLVAATLLSAQPHNYTGALPGRRGAVLPRHV 240 Query: 241 RRAQDFLEAHAHEPVTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAELM 300 R QD+L+AHAHE V+AEQLA+ AGVSVRSLYAGFK+FLGVSPM YLRDLRMERA AEL+ Sbjct: 241 RSVQDYLQAHAHESVSAEQLARIAGVSVRSLYAGFKEFLGVSPMHYLRDLRMERAHAELV 300 Query: 301 SGDSNHVAGVALRWGFAHMGRFSNEYKQRYGESPSKTLR 339 SG+S ++AGVALRWGFAHMGRFS YK+RYG SPS++LR Sbjct: 301 SGESRNIAGVALRWGFAHMGRFSAGYKERYGVSPSQSLR 339 >gb|EGP44415.1| AraC family regulatory helix-turn-helix protein 14 [Achromobacter xylosoxidans AXX-A] Length = 355 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 203/354 (57%), Positives = 262/354 (74%), Gaps = 13/354 (3%) Query: 1 MMNVLHSDPSTGRMPMPAS-------------VERLLNGSNKLLFASSDLDEVRSMVGRV 47 M+N + S+ T P ++ +L + LFAS DLDE R+MVGRV Sbjct: 1 MLNTMQSEAETSWQPAEPRPAGAGTAGASGWRIDTILATPAQQLFASGDLDEARAMVGRV 60 Query: 48 MKPHRLDLTGQGERLDARMHYTSLGDLSVSRLRYGSAVQIEPGSLDSFFLVQMPLYGMAR 107 M+PH L + G +RL+ARMH+ LG++S++RLRYG+ V+I PG L+ FFLVQMPL G A Sbjct: 61 MRPHHLGVVGSTQRLNARMHHQPLGEVSLNRLRYGANVEIRPGPLEDFFLVQMPLSGTAL 120 Query: 108 IESGAQHIDSSAELASVLSPQEATRMTWMAGTDQLMLRLSRSLVERTLVGYLGHPLNEPL 167 IESG Q +DS+ ++ASV+SP + M W DQ MLR+ RSL+ERTLVG+LG L PL Sbjct: 121 IESGPQRVDSTPDVASVVSPDDDLAMHWADDNDQFMLRVGRSLLERTLVGHLGCTLERPL 180 Query: 168 RFELGFRWRECAPWQCMLSYLIDCTLQHPDLAMHKIVVSQIEQLAASILVTSHRHNHCED 227 RF+LGFRWREC W+C+++YL+DC+ QH DLA HK++V Q+EQL A+ L+++ HN+ Sbjct: 181 RFQLGFRWRECPAWRCLMAYLLDCSSQHADLAEHKLIVHQMEQLVAATLLSTLPHNYSAT 240 Query: 228 APARRSTILPRHVRRAQDFLEAHAHEPVTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYL 287 RR +LPRHVR QD+L+AHAHEPV+AEQLA+ AGVSVRSLYAGFK+FLG+SPM YL Sbjct: 241 PAGRRGAVLPRHVRCVQDYLQAHAHEPVSAEQLARIAGVSVRSLYAGFKEFLGISPMHYL 300 Query: 288 RDLRMERARAELMSGDSNHVAGVALRWGFAHMGRFSNEYKQRYGESPSKTLRTH 341 RDLRMERARAEL++G+ +VAGVALRWGFAH+GRFS YK RYGESPS+++R H Sbjct: 301 RDLRMERARAELVAGECQNVAGVALRWGFAHLGRFSASYKARYGESPSQSVRRH 354