BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1889.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002909620.1| methyl-accepting chemotaxis protein [Burkhol... 320 5e-85 ref|YP_002908602.1| methyl-accepting chemotaxis sensory transduc... 261 2e-67 ref|YP_002909140.1| methyl-accepting chemotaxis sensory transduc... 259 6e-67 ref|YP_004362535.1| Methyl-accepting chemotaxis sensory transduc... 259 1e-66 ref|YP_003773965.1| methyl-accepting chemotaxis transducer trans... 255 2e-65 >ref|YP_002909620.1| methyl-accepting chemotaxis protein [Burkholderia glumae BGR1] gb|ACR32385.1| Methyl-accepting chemotaxis protein [Burkholderia glumae BGR1] Length = 522 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 222/525 (42%), Positives = 320/525 (60%), Gaps = 9/525 (1%) Query: 7 ASRPLPLALRIALTFGTLLLLCVLAGAIGLWQLQLVTGKLDAVVNDGNLKLALAQDLSRQ 66 A L ++ R+AL FG+L L G LWQL +L+ VV+DGN+KLALA DLSRQ Sbjct: 2 AKSTLTVSARLALAFGSLTLAFATCGGFALWQLARANARLEQVVDDGNVKLALATDLSRQ 61 Query: 67 VHIGVESFQSVIIISDKAAAEAAMQRGGAAHERFIKQRKALLALVSDEQMRQ-LTQTVFT 125 V IG ++ +++++++D A A +RG AA +RF+++R+AL D L ++ Sbjct: 62 VFIGTDAVKTMLLVADPATQAALAKRGYAAKQRFLEEREALRRANRDAAGAAALVDAIYE 121 Query: 126 VNDQKAEPAFGYFVQLSMAGQREEAGRWLATQLNPALAQLQAAIQALIDLQTARNQQLQQ 185 ND++A P F FV L+ G+R EAG WL T+ P++ LQ +I D +T RN+ L++ Sbjct: 122 ANDRRAAPDFDQFVTLTQQGRRAEAGTWLETRTGPSMQALQDSITRYADFETERNRALKE 181 Query: 186 QSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALHVAHEIAGGNLVV 245 ++ RD R ++ + C G G+ R++R+ LG EP A H H +A G+L Sbjct: 182 RNLRDYRTARLVLGIALIGCTALVMAVGIGIARSLRRELGAEPAVARHFVHLVAQGDLSR 241 Query: 246 TVPVAGRDQASMMAAMREMRDKLIAVVGLVNHNAQAVASASQQIAQGHHDLSERTEIQAS 305 PVA S++ A+ EM L +V V +A V A+++IA G +LS RTE QA+ Sbjct: 242 APPVAAVRAGSLVVALDEMLHGLRTLVESVRRHADDVTLATREIADGTRELSTRTEQQAA 301 Query: 306 SLQQTTASMGELSSKVRYTADQSALACRLSDEATAATRSGREVVERVIAQMQEIDTSSGR 365 SL+ T A+M +L+ V+ AD + A LS AT +G V+ V+ M EI SS + Sbjct: 302 SLEHTVANMAQLTGSVKRNADDAREASALSHGATEVAGAGNAAVQDVMRTMAEIGGSSRK 361 Query: 366 IVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQL 425 I DI +IEG+AFQTNILALNAAVE+ARAGE GRGFAVVA EVR LAQRSAAA++EI L Sbjct: 362 IADITGLIEGIAFQTNILALNAAVESARAGEHGRGFAVVAGEVRNLAQRSAAAAKEIGAL 421 Query: 426 ILASVDSSAAASKLSREAGAAMQQVVESIAR----VNSVMRDISSANQEQSTGIGEVNQA 481 V+SS A AA+ + + S+ R V+ ++ DI++A+Q QS GI +V+ Sbjct: 422 ----VESSTAIVHRGETQIAALGKTIGSLQRAVDDVSRLLGDIAAASQVQSRGIEQVDHV 477 Query: 482 LIQLDDLTQKNAALVEEATAASIFLNDKAGELARSVRTFQLPVIA 526 L Q+D++TQ+NAALVE+A A+ L++ A L ++V TF+LP +A Sbjct: 478 LSQMDEVTQQNAALVEQAAGAAQSLDELAQGLKQAVSTFRLPSLA 522 >ref|YP_002908602.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31367.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 205/514 (39%), Positives = 303/514 (58%), Gaps = 4/514 (0%) Query: 13 LALRIALTFGTLLLLCVLAGAIGLWQLQLVTGKLDAVVNDGNLKLALAQDLSRQVHIGVE 72 ++ R+ FG L L + AIG + L + G+LD + N + LA L + Sbjct: 6 VSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGRLDDIARVNNAETKLANQLRTSIQDRAI 65 Query: 73 SFQSVIIISDKAAAEAAMQRGGAAHERFIKQRKALLALVSDEQMRQLTQTVFTVNDQKAE 132 + +++ ++SD +R + + + L L +DE + ++ E Sbjct: 66 AVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQLFTDEPGTTEREKALLAQIRRDE 125 Query: 133 ----PAFGYFVQLSMAGQREEAGRWLATQLNPALAQLQAAIQALIDLQTARNQQLQQQSQ 188 P QLS+A RE A R L A L D + N Q Q+ + Sbjct: 126 AAALPPLRKAAQLSLANDREGATRELLQNARTPQRTWLARAVELADFEDQLNDQAQRDAV 185 Query: 189 RDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALHVAHEIAGGNLVVTVP 248 + R L+AA A +L A A + R++ + LGGEP A VA EIA GNL+V + Sbjct: 186 SLYSSVRVLIAAIVAASLLVAAVAAVLITRSILRQLGGEPGLAQSVAAEIANGNLMVDLH 245 Query: 249 VAGRDQASMMAAMREMRDKLIAVVGLVNHNAQAVASASQQIAQGHHDLSERTEIQASSLQ 308 + D S+MA++ MR +L ++V + +A++++ A+ Q+AQG+ DLS+RTE QA+SL+ Sbjct: 246 LKPGDSTSLMASLEAMRARLTSIVHGIKTSAESISVAANQVAQGNVDLSQRTEEQAASLE 305 Query: 309 QTTASMGELSSKVRYTADQSALACRLSDEATAATRSGREVVERVIAQMQEIDTSSGRIVD 368 +T ASM EL+S V++ D + L+ A+ SG +VV +V+ M +I +SS ++ + Sbjct: 306 ETAASMEELTSTVKHNTDNARQGSTLAVTASQTATSGGDVVRQVMGTMDDITSSSRKVAE 365 Query: 369 IISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQLILA 428 IISVIEG+AFQTNILALNAAVEAARAGEQGRGFAVVA EVRTLAQRSA A++EIK+LI Sbjct: 366 IISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIKELIET 425 Query: 429 SVDSSAAASKLSREAGAAMQQVVESIARVNSVMRDISSANQEQSTGIGEVNQALIQLDDL 488 SV AA S+L +AG M ++V S+ RV+ +M +I+SA+ EQSTGI +VN A+ Q+D++ Sbjct: 426 SVSHVAAGSQLVGDAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVAQMDEV 485 Query: 489 TQKNAALVEEATAASIFLNDKAGELARSVRTFQL 522 TQ+NAALVE+ATAA+ + D+A L +V F++ Sbjct: 486 TQQNAALVEQATAAAQSMADQAENLRATVSIFRV 519 >ref|YP_002909140.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31905.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 200/518 (38%), Positives = 302/518 (58%), Gaps = 4/518 (0%) Query: 9 RPLPLALRIALTFGTLLLLCVLAGAIGLWQLQLVTGKLDAVVNDGNLKLALAQDLSRQVH 68 + + ++ R+ FG L L + AIG + L + G LD + N + LA L + Sbjct: 2 KNMTVSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGTLDDIARVNNTETKLANRLRSSIQ 61 Query: 69 IGVESFQSVIIISDKAAAEAAMQRGGAAHERFIKQRKALLALVSDE----QMRQLTQTVF 124 + +++ ++SD +R + + + L + +DE + + Sbjct: 62 DRAIAVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQMFADEPGTTEREKTLLAQL 121 Query: 125 TVNDQKAEPAFGYFVQLSMAGQREEAGRWLATQLNPALAQLQAAIQALIDLQTARNQQLQ 184 ++ A P QL ++ R A + L P + A L D + N Q Q Sbjct: 122 KQDEAAALPPLRKAAQLGLSNDRAGATQELLQNARPPQRKWLARAIELADFEDQLNDQAQ 181 Query: 185 QQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALHVAHEIAGGNLV 244 + + R L+AA A +L A + R++ + LGGEP A VA EIA GNL+ Sbjct: 182 GSAVSLYSSVRVLIAAIVAASLLVAAVTAVLITRSILRQLGGEPGLAQSVAAEIANGNLM 241 Query: 245 VTVPVAGRDQASMMAAMREMRDKLIAVVGLVNHNAQAVASASQQIAQGHHDLSERTEIQA 304 V + + D S+MA++ MR +L ++V + +A++++ A+ Q+AQG+ DLS+RTE QA Sbjct: 242 VDLHLKPGDSTSLMASLEAMRARLTSIVHGIKTSAESISVAANQVAQGNVDLSQRTEEQA 301 Query: 305 SSLQQTTASMGELSSKVRYTADQSALACRLSDEATAATRSGREVVERVIAQMQEIDTSSG 364 +SL++T ASM EL+S V++ D + L+ A+ SG +VV +V+ M +I +SS Sbjct: 302 ASLEETAASMEELTSTVKHNTDNARQGSTLAVTASQTASSGGDVVRQVVGTMDDIASSSR 361 Query: 365 RIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQ 424 ++ +IISVIEG+AFQTNILALNAAVEAARAGEQGRGFAVVA EVRTLAQRSA A++EIK+ Sbjct: 362 KVAEIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIKE 421 Query: 425 LILASVDSSAAASKLSREAGAAMQQVVESIARVNSVMRDISSANQEQSTGIGEVNQALIQ 484 LI SV AA S+L AG M ++V S+ RV+ +M +I+SA+ EQSTGI +VN A+ Q Sbjct: 422 LIETSVSHVAAGSQLVAGAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVAQ 481 Query: 485 LDDLTQKNAALVEEATAASIFLNDKAGELARSVRTFQL 522 +D++TQ+NAALVE+ATAA+ + D+A L +V F++ Sbjct: 482 MDEVTQQNAALVEQATAAAQSMADQAENLRATVSIFRV 519 >ref|YP_004362535.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] gb|AEA65505.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] Length = 565 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 303/512 (59%), Gaps = 4/512 (0%) Query: 13 LALRIALTFGTLLLLCVLAGAIGLWQLQLVTGKLDAVVNDGNLKLALAQDLSRQVHIGVE 72 ++ R+ + FG L L + AIG + L + GKLD++ N + LA L + Sbjct: 6 VSTRLIIGFGLLTALLLAVAAIGFYGLSQLNGKLDSITRVNNTETKLANRLRASIQDRAI 65 Query: 73 SFQSVIIISDKAAAEAAMQRGGAAHERFIKQRKALLALVSDE---QMRQLTQTVFTVNDQ 129 + +++ +++D +R + + + L + +DE R+ T + D+ Sbjct: 66 AVRNLALLTDAQDMAKEAERISKQEQIYADAYQKLSQMFADEPGTTEREKTLVAQIMQDE 125 Query: 130 KAE-PAFGYFVQLSMAGQREEAGRWLATQLNPALAQLQAAIQALIDLQTARNQQLQQQSQ 188 A P QL ++ A R L + P + L D + N Q Q+ + Sbjct: 126 AAVLPPMRKAAQLGLSNDMAGATRELLQNVRPLQQRWLTHSVELADFEDQLNDQAQRDAV 185 Query: 189 RDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALHVAHEIAGGNLVVTVP 248 + R L+AA + + A + R++ + LGGEP A VA EIA GNL+V + Sbjct: 186 STYSSVRILIAAIVVVSLQLAAATAILITRSILRELGGEPGLAQSVAAEIANGNLMVDLH 245 Query: 249 VAGRDQASMMAAMREMRDKLIAVVGLVNHNAQAVASASQQIAQGHHDLSERTEIQASSLQ 308 V D +S+MA++ MR +L +V + +A++++ A+ ++AQG+ DLS+RTE QA+SL+ Sbjct: 246 VKPSDSSSLMASLESMRVRLTLIVQGIKTSAESISVAANEVAQGNVDLSQRTEEQAASLE 305 Query: 309 QTTASMGELSSKVRYTADQSALACRLSDEATAATRSGREVVERVIAQMQEIDTSSGRIVD 368 +T+ASM EL+S V++ D + L+ A+ SG +VV +V+ M++I +SS ++ + Sbjct: 306 ETSASMEELTSTVKHNTDNARQGSALAVTASQTASSGGDVVRQVVGTMEDITSSSRKVSE 365 Query: 369 IISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQLILA 428 II+VIEG+AFQTNILALNAAVEAARAGEQGRGFAVVA EVRTLAQRSA A++EIK+LI Sbjct: 366 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIKELIET 425 Query: 429 SVDSSAAASKLSREAGAAMQQVVESIARVNSVMRDISSANQEQSTGIGEVNQALIQLDDL 488 S A S+L AGA M ++V S+ RV+ +M +I+SA+ EQSTGI +VN A+ Q+D++ Sbjct: 426 SEAHVTAGSQLVAGAGATMDEIVRSVQRVSDIMSEIASASAEQSTGIEQVNVAVAQMDEV 485 Query: 489 TQKNAALVEEATAASIFLNDKAGELARSVRTF 520 TQ+NAALVE+ATAA+ + D+A L +V F Sbjct: 486 TQQNAALVEQATAAAQSMADQAESLRAAVSIF 517 >ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62057.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 197/516 (38%), Positives = 301/516 (58%), Gaps = 4/516 (0%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLQLVTGKLDAVVNDGNLKLALAQDLSRQVHIG 70 L + R+AL FG +L+ + A+GL+ + V L + + N ++ L L + Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 71 VESFQSVIIISDKAAAEAAMQRGGAAHERFIKQRKALLALVSDEQM---RQLTQTVFTVN 127 + +++ ++ ++A + Q + + AL + + E R+ V N Sbjct: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 Query: 128 DQKAE-PAFGYFVQLSMAGQREEAGRWLATQLNPALAQLQAAIQALIDLQTARNQQLQQQ 186 D+ A P VQL + + EAG+ L TQ+ P ++ L + + N + Sbjct: 124 DEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 Query: 187 SQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALHVAHEIAGGNLVVT 246 ++ R + A LA +L A + R++ + LG EP +A VA +IA G+L T Sbjct: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTAT 243 Query: 247 VPVAGRDQASMMAAMREMRDKLIAVVGLVNHNAQAVASASQQIAQGHHDLSERTEIQASS 306 V V D +S+MA++ +MR +L + + A+ ++ AS QIAQG+ DLS+RTE QA+S Sbjct: 244 VRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 Query: 307 LQQTTASMGELSSKVRYTADQSALACRLSDEATAATRSGREVVERVIAQMQEIDTSSGRI 366 L++T ASM EL++ VR ++ A RLS AT +G + +RV+ M I SS ++ Sbjct: 304 LEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 Query: 367 VDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQLI 426 DIISVIEG+AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA A++EIK+LI Sbjct: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELI 423 Query: 427 LASVDSSAAASKLSREAGAAMQQVVESIARVNSVMRDISSANQEQSTGIGEVNQALIQLD 486 S+ A S+L +AG M Q+V S+ R +M +I++A QEQ +GI ++N A++Q+D Sbjct: 424 GESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMD 483 Query: 487 DLTQKNAALVEEATAASIFLNDKAGELARSVRTFQL 522 +TQ+NAALVEEA+AA+ L+ +A L + V F++ Sbjct: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519