BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1888.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777852.1| hypothetical protein Hsero_4478 [Herbaspiril... 407 e-112 ref|YP_004114229.1| gluconate 2-dehydrogenase [Pantoea sp. At-9b... 212 3e-53 ref|ZP_04947234.1| hypothetical protein BDAG_03202 [Burkholderia... 212 4e-53 ref|ZP_03569632.1| gluconate 2-dehydrogenase subunit 3 (gadhsubu... 211 8e-53 ref|YP_003933127.1| gluconate 2-dehydrogenase subunit 3 precurso... 208 5e-52 >ref|YP_003777852.1| hypothetical protein Hsero_4478 [Herbaspirillum seropedicae SmR1] gb|ADJ65944.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 211/235 (89%), Positives = 224/235 (95%) Query: 1 MKKISISANRRRFLRGALTAAPAAALAVTTGSLSASAEEQAGNVPYKPVFFNQDEFALLS 60 MKKISIS +RRRFLRGALTAAP AALAVT GSL+A AE + + PY+P FFN+DEFALLS Sbjct: 1 MKKISISPDRRRFLRGALTAAPVAALAVTAGSLTAKAEGPSPDQPYQPSFFNRDEFALLS 60 Query: 61 ALADTLIPADETGPGALEAGVPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120 ALADTLIPAD+TGPGAL+AGVP FIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP Sbjct: 61 ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120 Query: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALFNL 180 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMM EFEKG+QGSLKMATIPP+ALFNL Sbjct: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL 180 Query: 181 LLQNVHEGYFCDPTDGGNKGMGSWKMIGFPGARADYYDWVDQYGRTYPLPPISRG 235 LLQNVHEGYFCDPTDGGN+GMGSWKMIGFPGARADYYDWVDQYG++YPLPPISRG Sbjct: 181 LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235 >ref|YP_004114229.1| gluconate 2-dehydrogenase [Pantoea sp. At-9b] gb|ADU67673.1| Gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] Length = 244 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 146/232 (62%), Gaps = 13/232 (5%) Query: 10 RRRFLRGALTAAPAAALAVTT-----GSLSASAEEQAGNVP----YKPVFFNQDEFALLS 60 RR FL +T APA A+ T ++A A EQ G Y+P +F +EFAL++ Sbjct: 10 RRDFLLRTITLAPAMAVGSTAMGALVAPMAAGAAEQPGAPQKARDYQPTWFTAEEFALIT 69 Query: 61 ALADTLIPADETGPGALEAGVPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120 A LIP DE GPGALEAGVP FID QMNTPY G WYMQGPF PD P E GYQL Sbjct: 70 AAVARLIPNDERGPGALEAGVPEFIDRQMNTPYATGSNWYMQGPFNPDLPKELGYQLSLV 129 Query: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALFNL 180 P+++Y+ GLAE D +QQ+G + EL+ +Q++ ++G+FE G +P F+ Sbjct: 130 PQQIYRLGLAEADNWSKQQHGKVFAELSGEQQDALLGDFESGKAA---FTQLPAKTFFSF 186 Query: 181 LLQNVHEGYFCDPTDGGNKGMGSWKMIGFPGARADYYDWVDQYGRTYPLPPI 232 LLQN EGYF DP GGN+GM WK+IGFPGARADY DWV++ G YP P + Sbjct: 187 LLQNTREGYFSDPIHGGNQGMVGWKLIGFPGARADYMDWVER-GERYPFPSV 237 >ref|ZP_04947234.1| hypothetical protein BDAG_03202 [Burkholderia dolosa AUO158] gb|EAY70405.1| hypothetical protein BDAG_03202 [Burkholderia dolosa AUO158] Length = 293 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 148/234 (63%), Gaps = 13/234 (5%) Query: 9 NRRRFLRGALTAAPAAALAVTTGSLSASAEEQAGNVP---------YKPVFFNQDEFALL 59 +RRRFLR ++ P A++A S+ + AGN P YKP FF+ E+A + Sbjct: 58 SRRRFLRTSVALVPIASVAGCDLRSSSPSATTAGNAPAAADGDRSPYKPTFFDAKEWAFV 117 Query: 60 SALADTLIPADETGPGALEAGVPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPY 119 A D LIPAD GPGALEAGVP FID QM+TPY G WYM+GPF AP E GYQL Sbjct: 118 QAAVDRLIPADAEGPGALEAGVPEFIDRQMDTPYAHGATWYMRGPFQQGAP-ELGYQLKL 176 Query: 120 PPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALFN 179 PR+LY+ G+A + + G + +L+ R+ ++GE EKG S ++ +PP F Sbjct: 177 VPRDLYRLGIAAVNRYCEKTRGKAFADLDAPTRDAVLGELEKG---SAQIDDVPPGVFFG 233 Query: 180 LLLQNVHEGYFCDPTDGGNKGMGSWKMIGFPGARADYYDWVDQYGRTYPLPPIS 233 LLLQN EGYFCDP GGN+GM +WKMIGFPGARAD+ D+V+Q G+ YP P+S Sbjct: 234 LLLQNTREGYFCDPVHGGNRGMAAWKMIGFPGARADFMDFVNQNGKPYPYGPVS 287 >ref|ZP_03569632.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2M] ref|ZP_03576273.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2] ref|ZP_03588174.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD1] gb|EED97372.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD1] gb|EEE09616.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2] gb|EEE15539.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2M] Length = 246 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 111/235 (47%), Positives = 144/235 (61%), Gaps = 14/235 (5%) Query: 9 NRRRFLRGALTAAPAAALA----------VTTGSLSASAEEQAGNVPYKPVFFNQDEFAL 58 +RRRFLR ++ P A++A TT +++A A PYKP FF+ E+A Sbjct: 10 SRRRFLRTSVALVPIASVAGCDLRSSPSSATTAGHASAASADAERSPYKPTFFDAKEWAF 69 Query: 59 LSALADTLIPADETGPGALEAGVPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLP 118 + A D LIPAD GPGAL+AGVP FID QM TPY G WYMQ PF PE GYQL Sbjct: 70 VQAAVDRLIPADAEGPGALDAGVPEFIDRQMETPYAHGATWYMQAPFQ-QGVPELGYQLK 128 Query: 119 YPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALF 178 PR++Y+ G+A D + +G + +L+ R+ ++G EKG S + +PP F Sbjct: 129 LVPRDVYRLGIAAVDRYCEKTHGKAFADLDAATRDAVLGALEKG---SAPIDDVPPGVFF 185 Query: 179 NLLLQNVHEGYFCDPTDGGNKGMGSWKMIGFPGARADYYDWVDQYGRTYPLPPIS 233 LLQN EGYFCDP GGN+GM +WKMIGFPGARAD+ D+V+Q G+ YP P+S Sbjct: 186 GQLLQNTREGYFCDPVHGGNRGMAAWKMIGFPGARADFMDFVNQNGKPYPYGPVS 240 >ref|YP_003933127.1| gluconate 2-dehydrogenase subunit 3 precursor [Pantoea vagans C9-1] gb|ADO11678.1| Gluconate 2-dehydrogenase subunit 3 precursor [Pantoea vagans C9-1] Length = 244 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 112/234 (47%), Positives = 149/234 (63%), Gaps = 13/234 (5%) Query: 9 NRRRFLRGALTAAPAAALAVTT-GSLSASAEEQAGNVP--------YKPVFFNQDEFALL 59 +RR FL +T APA A+ T G+LS QA P Y+P +F +EFA + Sbjct: 9 SRRDFLLKTITLAPAMAVGSTAMGALSLPLAVQAAETPAGPQQARDYQPAWFTAEEFAFI 68 Query: 60 SALADTLIPADETGPGALEAGVPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPY 119 +A LIP+DE GPGALEAGVP FID QMNTPY G WYMQGPF PD P E GYQLP Sbjct: 69 TAAVARLIPSDERGPGALEAGVPEFIDRQMNTPYATGSNWYMQGPFNPDLPKELGYQLPL 128 Query: 120 PPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALFN 179 P+++Y+ GLA+ D+ +QQ+G + +L+ +Q++ ++ E GS + + +P F+ Sbjct: 129 VPQQIYRLGLADADSYSKQQHGKVFAQLSGEQQDALLQAME---SGSAEFSQLPSKVFFS 185 Query: 180 LLLQNVHEGYFCDPTDGGNKGMGSWKMIGFPGARADYYDWVDQYGRTYPLPPIS 233 LLQN EG+F DP GGN+GM WK+I FPGARAD+ DWV++ G YP P +S Sbjct: 186 FLLQNTREGFFSDPIHGGNQGMVGWKLINFPGARADFMDWVER-GERYPFPSVS 238