BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1886.p (483 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777854.1| cytochrome c precursor protein [Herbaspirill... 764 0.0 ref|YP_372550.1| cytochrome c, class I [Burkholderia sp. 383] >g... 451 e-124 gb|EGD02717.1| gluconate 2-dehydrogenase (acceptor) [Burkholderi... 451 e-124 ref|YP_624003.1| cytochrome c, class I [Burkholderia cenocepacia... 449 e-124 ref|ZP_03588172.1| gluconate 2-dehydrogenase cytochrome c subuni... 448 e-123 >ref|YP_003777854.1| cytochrome c precursor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65946.1| cytochrome c precursor protein [Herbaspirillum seropedicae SmR1] Length = 482 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 410/454 (90%), Positives = 432/454 (95%) Query: 30 DESLSVPAPPKPPVGARLLNRETAPLRPLATPPADAALAQRVAKKDSPSADDQLLLRGAY 89 + SLSVP PP+PPVGARLLNRE PLRP ATP AD ALAQR+A + S SA+DQ +LRGAY Sbjct: 29 EPSLSVPIPPQPPVGARLLNREIKPLRPHATPAADTALAQRIAAQGSASAEDQQILRGAY 88 Query: 90 LARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKEHGIGDWSYEDFARLMRTG 149 LARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDK+HGIGDWSYEDFARLMRTG Sbjct: 89 LARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKQHGIGDWSYEDFARLMRTG 148 Query: 150 VTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFTKAVPPSAQANRANDIPWPLSMRWPLAI 209 VTKAGYTVYPAMPYPSYSRLTDEDMQALYAYF+KAVPPSAQ NRANDIPWPLSMRWPLA+ Sbjct: 149 VTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPLSMRWPLAL 208 Query: 210 WRKLFAPTPAPYAAPAGTDAQLARGAYLVEGLGHCGSCHTPRSTTMQEKSLRDDSSRLYL 269 WRK+FAPTPAPY AG+D +LARGAYLVEGLGHCGSCH+PR+ TMQEK+L++D RL+L Sbjct: 209 WRKVFAPTPAPYTPAAGSDQELARGAYLVEGLGHCGSCHSPRAVTMQEKALKEDGGRLFL 268 Query: 270 SGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMNDVIEHSMQYMT 329 SGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMNDVIE SMQYM+ Sbjct: 269 SGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMNDVIEDSMQYMS 328 Query: 330 EADLNAMSRYLLSLPPRQQAAPYRYDSATAQAAYDGRPDGPGARIYLDRCAACHRSNGTG 389 +ADLNAM+RYLLSLPPRQQAAPYRYDSATAQAAYDGRPDGPGARIYLDRCAACHRSNGTG Sbjct: 329 DADLNAMARYLLSLPPRQQAAPYRYDSATAQAAYDGRPDGPGARIYLDRCAACHRSNGTG 388 Query: 390 YGKAFPALAGNPVLQTGDATSAIRIILQGGRQPSTASATAGLVMAPYAQLLNDQQVAEVT 449 YGKAFPALAGNPVLQT DATSAIRIILQGGRQPSTASATAGLVMAPYAQLL+DQQVAEVT Sbjct: 389 YGKAFPALAGNPVLQTSDATSAIRIILQGGRQPSTASATAGLVMAPYAQLLDDQQVAEVT 448 Query: 450 SYIQTAWGNRGATTTAAEVAKVRKTAVPVAERAP 483 SYIQTAWGNRG TTTAAEVAKVRKTAVPVAERAP Sbjct: 449 SYIQTAWGNRGGTTTAAEVAKVRKTAVPVAERAP 482 >ref|YP_372550.1| cytochrome c, class I [Burkholderia sp. 383] gb|ABB11906.1| Cytochrome c, class I [Burkholderia sp. 383] Length = 470 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 230/402 (57%), Positives = 291/402 (72%), Gaps = 2/402 (0%) Query: 83 LLLRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKEHGIGDWSYEDF 142 L+ RG YLARAGDC+ACHT+ GG PFAGGL +PIG IYSTNITPD + G+G W+ EDF Sbjct: 59 LIKRGEYLARAGDCIACHTASGGKPFAGGLKFDTPIGGIYSTNITPDPKTGLGGWTVEDF 118 Query: 143 ARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFTKAVPPSAQANRANDIPWPLS 202 R +R GV K G T+YPAMP+PSY+RLTD+DM+ALYAYF V P NRA DI WPLS Sbjct: 119 TRAVREGVRKNGDTMYPAMPFPSYARLTDDDMKALYAYFMHGVAPVEHENRAVDIVWPLS 178 Query: 203 MRWPLAIWRKLFAPTPAPYAAPAGTDAQLARGAYLVEGLGHCGSCHTPRSTTMQEKSLRD 262 MRWPL IWRK+FAPTP P+ A TD +ARGAYLV+GLGHCG+CHTPR+ TMQE+ L D Sbjct: 179 MRWPLGIWRKMFAPTPKPFDAAPYTDPVVARGAYLVQGLGHCGACHTPRAPTMQERGLTD 238 Query: 263 DSSRLYLSGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMNDVIE 322 +L+GG +DGW SLR E G+ W++ ++V+FL+TGR TA+FG M DV+ Sbjct: 239 ADGPDFLAGGAAIDGWVPTSLRGEPRTGLGTWNETEIVQFLKTGRTLRTAAFGGMTDVVG 298 Query: 323 HSMQYMTEADLNAMSRYLLSLPPRQQA-APYRYDSATAQAAYDGRPDGPGARIYLDRCAA 381 HSMQ+MT+ DLNA++RYL +LPPR Q P+ YD+A A+A G PGA +Y D C A Sbjct: 299 HSMQHMTDDDLNAIARYLKTLPPRVQGEQPHVYDAAAAKALQTGDASKPGAAVYRDNCMA 358 Query: 382 CHRSNGTGYGKAFPALAGNPVLQTGDATSAIRIILQGGRQPSTASATAGLVMAPYAQLLN 441 CHRS+G GY + FPALAGNPV+Q GD TS I ++L+G T +A + M P+ L+ Sbjct: 359 CHRSDGHGYTRVFPALAGNPVVQGGDPTSLIHVVLEGSALEGTRTAPSTFTMPPFGWRLS 418 Query: 442 DQQVAEVTSYIQTAWGNRGATTTAAEVAKVRKTAVPVAERAP 483 DQ+VA+V+++++T+WGN GA TAA+VAKVRK+ VP P Sbjct: 419 DQEVADVSNFVRTSWGNTGAPVTAAQVAKVRKS-VPSTRPEP 459 >gb|EGD02717.1| gluconate 2-dehydrogenase (acceptor) [Burkholderia sp. TJI49] Length = 434 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 231/405 (57%), Positives = 294/405 (72%), Gaps = 2/405 (0%) Query: 80 DDQLLLRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKEHGIGDWSY 139 D L+ RG YLARAGDC+ACHT+ GG PFAGGL +PIGAIYSTNITPD + G+G W+Y Sbjct: 20 DADLVKRGEYLARAGDCIACHTASGGKPFAGGLKFDTPIGAIYSTNITPDPKTGLGGWTY 79 Query: 140 EDFARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFTKAVPPSAQANRANDIPW 199 EDF R +R GV K G T+YPAMP+PSYSRLTD+DM+ALY YF V P NRA DI W Sbjct: 80 EDFTRAVREGVRKNGDTMYPAMPFPSYSRLTDDDMKALYVYFMHGVAPVEHENRAVDIVW 139 Query: 200 PLSMRWPLAIWRKLFAPTPAPYAAPAGTDAQLARGAYLVEGLGHCGSCHTPRSTTMQEKS 259 PLSMRWPLA WRKLFAP+P P+ A + +D +ARGAYLV+GLGHCG+CHTPR+ TMQE+ Sbjct: 140 PLSMRWPLAFWRKLFAPSPKPFDAASYSDPVIARGAYLVQGLGHCGACHTPRAPTMQERG 199 Query: 260 LRDDSSRLYLSGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMND 319 L D +L+GG +DGW SLR E G+ W++A++V+FL+TGR TA+FG M D Sbjct: 200 LTDADGPDFLAGGGAIDGWVPTSLRGEPRTGLGTWTEAEIVQFLKTGRTLRTAAFGGMTD 259 Query: 320 VIEHSMQYMTEADLNAMSRYLLSLPPRQQA-APYRYDSATAQAAYDGRPDGPGARIYLDR 378 V+ HSMQ+M++ DLNA++RYL +LPPR P+ YD+A A+A G PGA +Y D Sbjct: 260 VVGHSMQHMSDDDLNAIARYLKTLPPRVPGEQPHVYDAAAAKALQTGDASKPGAAVYRDN 319 Query: 379 CAACHRSNGTGYGKAFPALAGNPVLQTGDATSAIRIILQGGRQPSTASATAGLVMAPYAQ 438 C ACHRS+G GY + FPALAGNPV+Q D TS I ++L+G T +A + M P+ Sbjct: 320 CMACHRSDGHGYTRVFPALAGNPVVQGDDPTSLIHVVLEGSALEGTHTAPSTFTMPPFGW 379 Query: 439 LLNDQQVAEVTSYIQTAWGNRGATTTAAEVAKVRKTAVPVAERAP 483 L+DQ+VA+V+++++T+WGN GAT TAA+VAKVRK+ VP P Sbjct: 380 RLSDQEVADVSNFVRTSWGNTGATVTAAQVAKVRKS-VPSTRPEP 423 >ref|YP_624003.1| cytochrome c, class I [Burkholderia cenocepacia AU 1054] ref|YP_837853.1| cytochrome c, class I [Burkholderia cenocepacia HI2424] ref|YP_001776938.1| gluconate 2-dehydrogenase (acceptor) [Burkholderia cenocepacia MC0-3] gb|ABF79030.1| cytochrome c, class I [Burkholderia cenocepacia AU 1054] gb|ABK10960.1| cytochrome c, class I [Burkholderia cenocepacia HI2424] gb|ACA92448.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia cenocepacia MC0-3] Length = 475 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 229/402 (56%), Positives = 292/402 (72%), Gaps = 2/402 (0%) Query: 83 LLLRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKEHGIGDWSYEDF 142 L+ RG YLARAGDC+ACHT+ GG PFAGGL +PIG IYSTNITPD + G+G W+YEDF Sbjct: 64 LIKRGEYLARAGDCIACHTASGGKPFAGGLKFDTPIGGIYSTNITPDPKTGLGGWTYEDF 123 Query: 143 ARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFTKAVPPSAQANRANDIPWPLS 202 R +R GV K G T+YPAMP+PSY+RLTD+DM+ALYAYF V P NR DI WPLS Sbjct: 124 TRAVREGVRKNGDTMYPAMPFPSYARLTDDDMKALYAYFMHGVAPVEHENRKVDIVWPLS 183 Query: 203 MRWPLAIWRKLFAPTPAPYAAPAGTDAQLARGAYLVEGLGHCGSCHTPRSTTMQEKSLRD 262 MRWPL IWRK+FAP+P P+ A + TD +ARGAYLV+GLGHCG+CHTPR+ TMQE+ L D Sbjct: 184 MRWPLGIWRKMFAPSPKPFDAASYTDPVVARGAYLVQGLGHCGACHTPRAPTMQERGLTD 243 Query: 263 DSSRLYLSGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMNDVIE 322 +L+GG +DGW SLR E G+ WS+ ++V+FL+TGR TA+FG M DV+ Sbjct: 244 ADGLDFLAGGAAIDGWVPTSLRGEPRTGLGTWSETEIVQFLKTGRTLRTAAFGGMTDVVG 303 Query: 323 HSMQYMTEADLNAMSRYLLSLPPRQQA-APYRYDSATAQAAYDGRPDGPGARIYLDRCAA 381 HSMQ+MT+ DLNA++RYL +LPPR Q P+ YD+A A+A G PGA +Y D C A Sbjct: 304 HSMQHMTDDDLNAIARYLKTLPPRVQGEQPHVYDAAAAKALQTGDASKPGAAVYRDNCMA 363 Query: 382 CHRSNGTGYGKAFPALAGNPVLQTGDATSAIRIILQGGRQPSTASATAGLVMAPYAQLLN 441 CHRS+G GY + FPALAGNPV+Q D TS I ++L+G T +A + M P+ L+ Sbjct: 364 CHRSDGHGYTRVFPALAGNPVVQGDDPTSLIHVVLEGSALQGTRTAPSTFTMPPFGWRLS 423 Query: 442 DQQVAEVTSYIQTAWGNRGATTTAAEVAKVRKTAVPVAERAP 483 DQ+VA+V+++++T+WGN GA+ TAA+VAKVRK+ VP P Sbjct: 424 DQEVADVSNFVRTSWGNTGASVTAAQVAKVRKS-VPSTRPEP 464 >ref|ZP_03588172.1| gluconate 2-dehydrogenase cytochrome c subunit (gadh cytochrome c subunit) (ga 2-dh cytochrome c subunit) [Burkholderia multivorans CGD1] gb|EED97370.1| gluconate 2-dehydrogenase cytochrome c subunit (gadh cytochrome c subunit) (ga 2-dh cytochrome c subunit) [Burkholderia multivorans CGD1] Length = 467 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 232/404 (57%), Positives = 293/404 (72%), Gaps = 2/404 (0%) Query: 81 DQLLLRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKEHGIGDWSYE 140 D L+ RGAYLARAGDCVACHT+ GG PFAGGL +PIGAIYSTNITP ++ GIG WS E Sbjct: 54 DALVARGAYLARAGDCVACHTAVGGKPFAGGLKFDTPIGAIYSTNITPAQKTGIGTWSLE 113 Query: 141 DFARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFTKAVPPSAQANRANDIPWP 200 DF R +R GV K G T+YPAMP+PSY+RLTD+D++ALYAYF V P NRA DI WP Sbjct: 114 DFDRAVRAGVRKNGDTLYPAMPFPSYARLTDDDVKALYAYFMHGVAPVEHENRAVDIVWP 173 Query: 201 LSMRWPLAIWRKLFAPTPAPYAAPAGTDAQLARGAYLVEGLGHCGSCHTPRSTTMQEKSL 260 LSMRWPLAIWRK+FAP+P P+ A D LARGAYLV+GLGHCG+CHTPR+ TMQE++L Sbjct: 174 LSMRWPLAIWRKMFAPSPKPFDATPYADPVLARGAYLVQGLGHCGACHTPRAVTMQERAL 233 Query: 261 RDDSSRLYLSGGQVVDGWSVPSLRNEHGGGIAGWSQADLVEFLRTGRNQYTASFGAMNDV 320 D +L+GG +DGW SLR E G+ WS+ ++V+FL+TGR TA+FG M DV Sbjct: 234 TDADGLDFLAGGAAIDGWVPTSLRGEPRTGLGTWSEGEIVQFLKTGRTLRTAAFGGMTDV 293 Query: 321 IEHSMQYMTEADLNAMSRYLLSLPPRQQA-APYRYDSATAQAAYDGRPDGPGARIYLDRC 379 + HSMQ+M++ DL A++RYL +LPPR Q P+ YD+A A+A G PGA +Y D C Sbjct: 294 VGHSMQHMSDDDLTAIARYLKTLPPRVQGEQPHVYDAAAAKALQTGDASKPGAAVYRDNC 353 Query: 380 AACHRSNGTGYGKAFPALAGNPVLQTGDATSAIRIILQGGRQPSTASATAGLVMAPYAQL 439 ACHRS+G GY + FPALAGNPV+Q D TS I ++L+G T +A + M P+ Sbjct: 354 MACHRSDGHGYTRVFPALAGNPVVQGDDPTSLIHVVLEGSALVGTHTAPSTFTMPPFGWR 413 Query: 440 LNDQQVAEVTSYIQTAWGNRGATTTAAEVAKVRKTAVPVAERAP 483 L+DQ+VA+V+++I+T+WGN G+ TAA+VAKVRK+ VP P Sbjct: 414 LSDQEVADVSNFIRTSWGNTGSPVTAAQVAKVRKS-VPSTRPEP 456