BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1885.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777855.1| RNA polymerase sigma-70 factor, ECF subfamil... 296 5e-79 ref|YP_001666991.1| ECF subfamily RNA polymerase sigma-24 factor... 174 4e-42 ref|ZP_07043513.1| RNA polymerase, sigma-24 subunit, ECF subfami... 169 9e-41 ref|NP_250602.1| ECF sigma factor, FemI [Pseudomonas aeruginosa ... 166 1e-39 ref|YP_001564294.1| ECF subfamily RNA polymerase sigma-24 factor... 165 2e-39 >ref|YP_003777855.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65947.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 1 MEILMSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLR 60 MEILMSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLR Sbjct: 1 MEILMSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLR 60 Query: 61 EPRAYLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILD 120 EPRAYLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILD Sbjct: 61 EPRAYLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILD 120 Query: 121 QLPARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 169 QLPARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL Sbjct: 121 QLPARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 169 >ref|YP_001666991.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas putida GB-1] gb|ABY96655.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudomonas putida GB-1] Length = 167 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 95/165 (57%), Positives = 116/165 (70%) Query: 5 MSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRA 64 MS + ++G LYR HH WL WL +RL C+H ADLAQDTF+RLLG LREPRA Sbjct: 1 MSSLPHNAQVGELYRGHHSWLRGWLFKRLECQHQAADLAQDTFLRLLGRDTLNGLREPRA 60 Query: 65 YLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPA 124 +L T+AKGLV H RR LE A+L++LAALPEP PSAE R+LVL+TL EIDR+LD L Sbjct: 61 FLATVAKGLVVDHYRRLSLERAWLDSLAALPEPEAPSAEARVLVLETLVEIDRMLDGLKP 120 Query: 125 RARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 169 + R FLL+QLDGL Y IA LG+SLS+V+++M A HC L Sbjct: 121 KVRSAFLLSQLDGLTYPQIAEQLGLSLSSVQQYMTQAFGHCYRVL 165 >ref|ZP_07043513.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Comamonas testosteroni S44] gb|EFI62675.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Comamonas testosteroni S44] Length = 183 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 112/160 (70%) Query: 10 AHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTI 69 +H+E+ LY +HHGWL WL R++ ADL QDTFVR+LG R PP L PRAYLTT+ Sbjct: 23 SHREVAALYTDHHGWLQGWLRRKVGNAFDAADLTQDTFVRILGVREPPRLESPRAYLTTV 82 Query: 70 AKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQV 129 AKG++ + RR+ LE AYLEALA LPEP PS E R LVL+ L EID +LD LP R+ Sbjct: 83 AKGVLVNWCRRQALERAYLEALALLPEPEAPSPEHRALVLEALHEIDAMLDALPPLVRRT 142 Query: 130 FLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 169 FLL+QL+ + Y IA LG+SL++VKR+M A R CLA + Sbjct: 143 FLLSQLEDMKYDDIASQLGVSLTSVKRYMAQAFRQCLALM 182 >ref|NP_250602.1| ECF sigma factor, FemI [Pseudomonas aeruginosa PAO1] ref|ZP_01365265.1| hypothetical protein PaerPA_01002381 [Pseudomonas aeruginosa PACS2] ref|YP_791327.1| ECF subfamily RNA polymerase sigma-70 factor [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002440998.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa LESB58] ref|ZP_04928328.1| hypothetical protein PACG_00884 [Pseudomonas aeruginosa C3719] ref|ZP_04933627.1| hypothetical protein PA2G_00951 [Pseudomonas aeruginosa 2192] ref|ZP_06879156.1| RNA polymerase sigma factor [Pseudomonas aeruginosa PAb1] ref|ZP_07797170.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa 39016] gb|AAG05300.1|AE004617_4 ECF sigma factor, FemI [Pseudomonas aeruginosa PAO1] gb|ABJ11100.1| probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ52447.1| hypothetical protein PACG_00884 [Pseudomonas aeruginosa C3719] gb|EAZ57746.1| hypothetical protein PA2G_00951 [Pseudomonas aeruginosa 2192] emb|CAW28139.1| probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa LESB58] gb|EFQ42266.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa 39016] gb|EGM12325.1| RNA polymerase sigma factor [Pseudomonas aeruginosa 152504] gb|EGM14173.1| RNA polymerase sigma factor [Pseudomonas aeruginosa 138244] dbj|GAA17469.1| probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa NCMG1179] gb|AEO75612.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa M18] dbj|BAK89681.1| ECF subfamily RNA polymerase sigma-70 factor [Pseudomonas aeruginosa NCGM2.S1] Length = 168 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 2/164 (1%) Query: 5 MSPAEA--HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREP 62 M PA+A H + LY++HHGWL WL RRL C ADLAQDTF RLL R D REP Sbjct: 1 MPPADASLHDAVSHLYQDHHGWLQGWLRRRLGCAENAADLAQDTFARLLASRRVLDAREP 60 Query: 63 RAYLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQL 122 RAYLTT+AKGL+ + +R+ LE AYL+ALA LPE P E+RL+VL+TL E+D +L L Sbjct: 61 RAYLTTVAKGLMINWFQRQSLERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSL 120 Query: 123 PARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCL 166 P R RQ FLLAQ++GL Y +IA LG+SL +VKR+M A R CL Sbjct: 121 PDRVRQAFLLAQIEGLKYEAIAERLGVSLGSVKRYMQQAFRQCL 164 >ref|YP_001564294.1| ECF subfamily RNA polymerase sigma-24 factor [Delftia acidovorans SPH-1] gb|ABX35909.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Delftia acidovorans SPH-1] Length = 168 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 92/159 (57%), Positives = 113/159 (71%) Query: 11 HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTIA 70 H+E LY HHGWL WL RRL ADLAQDTFVR+LG R ++EPRAYLTT+A Sbjct: 9 HREAASLYTAHHGWLQGWLRRRLGNGADAADLAQDTFVRILGVRDLAGVQEPRAYLTTVA 68 Query: 71 KGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQVF 130 KG++ + +R+ LE AYLEALAALPEP PS E+R LVL+TL EID +LD LP R+ F Sbjct: 69 KGVLVNWYKRQALERAYLEALAALPEPVAPSPEQRALVLETLHEIDAMLDALPPIVRRTF 128 Query: 131 LLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 169 LL+QLDG+ Y IA L +SL++VKR+M A R CL A+ Sbjct: 129 LLSQLDGMKYEDIAQQLEVSLTSVKRYMAQAFRQCLVAM 167