BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1884.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777856.1| Fe2+-dicitrate sensor membrane protein [Herb... 512 e-143 ref|NP_841159.1| transmembrane sensor [Nitrosomonas europaea ATC... 225 8e-57 ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane component [J... 219 3e-55 ref|YP_004753357.1| Fe2+-dicitrate sensor, membrane component [C... 214 1e-53 ref|ZP_04939021.1| Fe2+-dicitrate sensor, membrane component [Bu... 205 8e-51 >ref|YP_003777856.1| Fe2+-dicitrate sensor membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65948.1| Fe2+-dicitrate sensor, membrane component protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 295/298 (98%), Positives = 296/298 (99%) Query: 1 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPPGGATALKQVGPAGRR 60 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPPGGATALKQVGPAGRR Sbjct: 24 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPPGGATALKQVGPAGRR 83 Query: 61 KAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDTRITL 120 KAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDTRITL Sbjct: 84 KAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDTRITL 143 Query: 121 DFSPAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAVEVAV 180 DF+PAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAVEVAV Sbjct: 144 DFTPAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAVEVAV 203 Query: 181 LQGAVEITPASSAQQTVLPSGMQTRFTRSGSAAPRPCDDTQAAWSRGLLIAERMPLAQFI 240 LQGAVEITPASSAQQTVLPSGMQTRFTRSGSAAPRPCDDTQAAWSRGLLIAERMPLAQFI Sbjct: 204 LQGAVEITPASSAQQTVLPSGMQTRFTRSGSAAPRPCDDTQAAWSRGLLIAERMPLAQFI 263 Query: 241 GELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWVRFYP 298 GELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWVR P Sbjct: 264 GELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWVRVLP 321 >ref|NP_841159.1| transmembrane sensor [Nitrosomonas europaea ATCC 19718] emb|CAD85009.1| putative transmembrane sensor [Nitrosomonas europaea ATCC 19718] Length = 328 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 132/301 (43%), Positives = 171/301 (56%), Gaps = 3/301 (0%) Query: 1 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPPG-GATALKQVGPAGR 59 M++H + R+ QWR RSP+H +AW RA L LPP AL G R Sbjct: 27 MQLHASTVTDMERNAWEQWRLRSPQHRQAWERAEQLMNKMGGLPPALSMAALTHPGGNNR 86 Query: 60 RKAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDTRIT 119 R AIK LA +T PA W A+ A T + E+RE++L DGS++ LNT T I Sbjct: 87 RAAIKKLALLMTALPASWAAWRVTPWEAWMAEYRTMVSEQREIELADGSQVRLNTATSID 146 Query: 120 LDFSPAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAVEVA 179 + F+ QRL+ L GEI++ TA D PRPF V T +G L LGTRFTVR+ ++ VA Sbjct: 147 VRFNAVQRLIVLHTGEILIQTAADNAVTPRPFQVLTAEGRLYALGTRFTVRQGEERSHVA 206 Query: 180 VLQGAVEITPAS--SAQQTVLPSGMQTRFTRSGSAAPRPCDDTQAAWSRGLLIAERMPLA 237 V GAV I P S S VL +G +T FT RP DDT AW++G+L+A++M L Sbjct: 207 VFDGAVAIHPKSGDSGVAQVLHAGNKTVFTAEAIEVSRPADDTDIAWTQGMLLADKMHLT 266 Query: 238 QFIGELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWVRFY 297 F EL RYR G+++ DP +A L +SG FP+ DTDR L +L T PVR+ T YWV Sbjct: 267 DFTDELSRYRQGIVRCDPVLADLRISGAFPIRDTDRTLAMLQATYPVRIVYRTPYWVTLV 326 Query: 298 P 298 P Sbjct: 327 P 327 >ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] gb|ABR89315.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 327 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 131/303 (43%), Positives = 182/303 (60%), Gaps = 9/303 (2%) Query: 1 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPPG-GATALKQVGPAGR 59 +++H +DA+ + L +W ++S EH+RAW A L F A+P G G T L + R Sbjct: 29 VKLHSQEMDASDHASLKRWCEQSTEHQRAWHAANELARNFGAVPAGLGLTTLGR--QRNR 86 Query: 60 RKAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDTRIT 119 R A+K LA TL P WLA+ ++ TA GER L DGS L LNT + + Sbjct: 87 RAAMKTLAIVCTLAPTSWLAWTHMARDN----YQTATGERSTYTLADGSSLMLNTGSSVD 142 Query: 120 LDFSPAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAVEVA 179 + F QRLLRL+ GE++V TA D PRPF+V T QGS+R LGTRF VR+R+ A EVA Sbjct: 143 IVFDDKQRLLRLRAGEVLVQTAKDSAPNPRPFIVQTGQGSVRALGTRFIVRQREDATEVA 202 Query: 180 VLQGAVEITPASSAQQTVLPSGMQTRFTRSGSAAPRPCDD--TQAAWSRGLLIAERMPLA 237 VL+ AVE+ A ++ +G F ++ AA P + +AW++G+LIA+R L Sbjct: 203 VLEHAVEVRALGVADPVIIAAGYGGSFGKTDIAALTPLANNVNASAWTQGILIADRQRLE 262 Query: 238 QFIGELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWVRFY 297 F+ ELGRYR G+L+ DPA+A L +SGVF ++T++ L +L +TLPV V TRYWV Sbjct: 263 DFLAELGRYRPGILRCDPAVADLRISGVFQTSNTEQALNVLQETLPVTVLSRTRYWVTVL 322 Query: 298 PPR 300 P + Sbjct: 323 PAQ 325 >ref|YP_004753357.1| Fe2+-dicitrate sensor, membrane component [Collimonas fungivorans Ter331] gb|AEK62534.1| Fe2+-dicitrate sensor, membrane component [Collimonas fungivorans Ter331] Length = 324 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 131/296 (44%), Positives = 174/296 (58%), Gaps = 4/296 (1%) Query: 1 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPP--GGATALKQVGPAG 58 M++H A + WR RSPEH+RAW A L +F+ +PP G + P Sbjct: 26 MKLHGDDATEADQQAWQHWRSRSPEHQRAWQCAQRLTNSFSDIPPELGMPVLDRPAYPQQ 85 Query: 59 RRKAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDTRI 118 RR A+K L L+ P WLA L + A TA GER + L DG++L LNT + + Sbjct: 86 RRAALKALVVLLSTAPVAWLA-AKLPWQDWTAEYQTATGERSTIALADGTQLILNTASSV 144 Query: 119 TLDFSPAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAVEV 178 + F QRL++L GE++V TA DR P RPF V TR G LR LGTRF VR+ V Sbjct: 145 DVKFDGRQRLVQLYTGEVLVTTAADRMLPARPFRVQTRHGLLRALGTRFDVRQEGMRSHV 204 Query: 179 AVLQGAVEITPASSAQQTVLPSGMQTRFTRSGSAAPRPCDDTQAAWSRGLLIAERMPLAQ 238 AV +GAVE+TP +A V+ +G Q FT + + DD QA WS+G+L A++M LA Sbjct: 205 AVFEGAVELTPLKAAA-VVVQAGQQCSFTANQAGPVLAVDDAQALWSQGVLYADKMRLAD 263 Query: 239 FIGELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWV 294 F+ EL RYR G L DPA+A VSG F L DTD+ L LL++ LPVR++++T+YWV Sbjct: 264 FVQELSRYRHGRLSCDPAVAEQRVSGAFQLKDTDQALTLLSKALPVRIERVTQYWV 319 >ref|ZP_04939021.1| Fe2+-dicitrate sensor, membrane component [Burkholderia cenocepacia PC184] gb|EAY62192.1| Fe2+-dicitrate sensor, membrane component [Burkholderia cenocepacia PC184] Length = 330 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 135/307 (43%), Positives = 169/307 (55%), Gaps = 5/307 (1%) Query: 1 MEMHEGPLDAARRSKLAQWRQRSPEHERAWSRAALLQETFAALPPGGATALKQVGP---- 56 ++ G D A + LA+WR P H+ AW +Q F L G Q Sbjct: 22 IDRQSGHTDDAFAAALARWRAEDPAHDAAWRHIEAMQGRFGRLAAGLDAQAAQAALLPKR 81 Query: 57 AGRRKAIKLLAYALTLGPAGWLAYHALSGPEQGARIATAIGERREVQLDDGSRLWLNTDT 116 AGRR A+K LA L G A W+A A A + TA+GERR V L DG+ + L+TDT Sbjct: 82 AGRRAAVKTLAVLLFAGGAAWMAEPARRATIWPADLRTAVGERRTVTLADGTVVVLDTDT 141 Query: 117 RITLDFSPAQRLLRLQRGEIMVLTAPDRQQPPRPFLVATRQGSLRPLGTRFTVRERDQAV 176 + + F A R LR+ RG IMV + D + P RP +VAT QG LRPLGTRF VR+RD A Sbjct: 142 ALDVRFDDAARRLRVLRGTIMVTSGHDDRLPARPLVVATAQGELRPLGTRFAVRQRDGAT 201 Query: 177 EVAVLQGAVEITPA-SSAQQTVLPSGMQTRFTRSGSAAPRPCDDTQAAWSRGLLIAERMP 235 V V GAV++ P +SA V+ +G FTR AP D +AW+ G+L+A RM Sbjct: 202 RVEVFAGAVQVRPVDASAGTRVIAAGKGADFTRDAIGAPASLDPYASAWTSGMLVASRMR 261 Query: 236 LAQFIGELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRYWVR 295 LA + EL RYR G L+ DPA+A L VSG +PL D RVL L TLP+ V LTRYW Sbjct: 262 LADLVAELDRYRRGNLRCDPAVADLRVSGTYPLDDPQRVLDTLMATLPIDVHYLTRYWAT 321 Query: 296 FYPPRRP 302 P P Sbjct: 322 VVPAYSP 328