BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1881.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777859.1| hypothetical protein Hsero_4485 [Herbaspiril...   137   5e-31
gb|EGH54950.1| hypothetical protein PSYCIT7_25714 [Pseudomonas s...    95   4e-18
ref|YP_001774572.1| hypothetical protein Bcenmc03_6976 [Burkhold...    90   1e-16
ref|YP_003334757.1| YCII-like protein [Dickeya dadantii Ech586] ...    89   2e-16
ref|YP_624724.1| hypothetical protein Bcen_4873 [Burkholderia ce...    89   2e-16

>ref|YP_003777859.1| hypothetical protein Hsero_4485 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65951.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 101/102 (99%), Positives = 101/102 (99%)

Query: 1   MIFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60
           MIFSVVLTYLRPIEEVNQHL THKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL
Sbjct: 1   MIFSVVLTYLRPIEEVNQHLDTHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60

Query: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102
           AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI
Sbjct: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102


>gb|EGH54950.1| hypothetical protein PSYCIT7_25714 [Pseudomonas syringae Cit 7]
          Length = 105

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 1   MIFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60
           M+F++ LTYLRP EEVN HL  HKAWL + ++ G +L AGPLA G GG +LA     A++
Sbjct: 1   MLFAIKLTYLRPAEEVNAHLDAHKAWLVNYIQSGTVLFAGPLADGNGGFILAHGEHIADI 60

Query: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102
             M+A+D F    +A +   +C PA+ +A F A WA  A++I
Sbjct: 61  KRMVAEDPFHVHRLATFDILSCNPAVRSADFAAHWASGAKYI 102


>ref|YP_001774572.1| hypothetical protein Bcenmc03_6976 [Burkholderia cenocepacia MC0-3]
 gb|ACA96077.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 102

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 65/102 (63%)

Query: 1   MIFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60
           M+F++ L Y+RP EEV+ HL +HKAWL  +++ G IL AGPL     G +LA      ++
Sbjct: 1   MLFAIKLDYIRPTEEVHAHLESHKAWLVKHVQAGSILFAGPLQGEAAGFLLAYADHRRDI 60

Query: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102
             M+A+D F   G+A +    CEPAL A+AFPA+WA  AR +
Sbjct: 61  EQMIAEDPFDILGLATFDIQCCEPALCASAFPARWAGGARAV 102


>ref|YP_003334757.1| YCII-like protein [Dickeya dadantii Ech586]
 gb|ACZ78051.1| YCII-related protein [Dickeya dadantii Ech586]
          Length = 102

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 62/102 (60%)

Query: 1   MIFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60
           M++++ L Y  P +E+ QH+  HK WLADN++ G I+ AGPL  G GG +LA   D + +
Sbjct: 1   MLYAITLEYSSPKDELEQHIDAHKKWLADNIKLGNIIFAGPLENGLGGFILAYGTDSSAV 60

Query: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102
            V ++ D F+  G+ R    A EPA+ +  F A WA SA+ +
Sbjct: 61  NVALSDDPFVKLGLVRVNISAIEPAICSGNFHAGWAGSAKVL 102


>ref|YP_624724.1| hypothetical protein Bcen_4873 [Burkholderia cenocepacia AU 1054]
 ref|YP_836928.1| hypothetical protein Bcen2424_3292 [Burkholderia cenocepacia
           HI2424]
 gb|ABF79751.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gb|ABK10035.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 102

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 59/102 (57%)

Query: 1   MIFSVVLTYLRPIEEVNQHLATHKAWLADNLRQGRILLAGPLAAGGGGLVLAACADEAEL 60
           M+F++ L Y+RP EE+  HL  HKAWL    + G IL AGPL    GG VLA      ++
Sbjct: 1   MLFAIKLDYVRPFEEIQAHLDAHKAWLIKYAQAGNILAAGPLHGESGGFVLAYAGQPRDI 60

Query: 61  AVMMAQDCFIAQGVARYTAHACEPALAAAAFPAQWAPSARFI 102
             M+A+D F   G+A++    CEPA+  A FP  WA  AR I
Sbjct: 61  ETMIAEDPFHIHGLAKFDVVCCEPAICVAGFPTHWAAGARTI 102