BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1879.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777861.1| transcription regulator protein [Herbaspiril... 488 e-136 ref|YP_003748563.1| LysR family transcriptional regulator [Ralst... 379 e-103 emb|CAQ37122.1| hypothetical protein RSMK03392 [Ralstonia solana... 377 e-102 gb|AEG71377.1| chromosome initiation inhibitor (oric replication... 377 e-102 ref|ZP_00946604.1| Transcriptional regulators, LysR family [Rals... 376 e-102 >ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65953.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 276/304 (90%), Positives = 289/304 (95%) Query: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE Sbjct: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 Query: 61 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHIFLAPLLARFLCAHPD 120 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAH+FLAPLLARFLCAHPD Sbjct: 61 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPD 120 Query: 121 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDSNLVVRTFGTSQQILAASPAYIRQHGPFD 180 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDS+LVVRTFGTSQQ+LAASPAY+R HGPFD Sbjct: 121 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFD 180 Query: 181 SVEALQGQRGLGPGGMPGQAQRWRLHGPQGEVAEIDYVAAMVTDDMHLAMQAAIGGAGVA 240 +V++LQGQRGLGPGG+PGQAQRWRL GP GEVAEIDY AMVTDDM L MQ AIGG G+A Sbjct: 181 TVQSLQGQRGLGPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGLA 240 Query: 241 LLPFNVCHAAIEGGQLRVLLPQHRGTPHQLHAVFPSRRGLVPAVRAFIEFMAVELSQTMQ 300 LLPFNV H AI G+L V+LPQ+RG PHQLHAVFPSRRGLVPAVRAFIEF+AVELSQTMQ Sbjct: 241 LLPFNVAHGAIARGELVVVLPQYRGAPHQLHAVFPSRRGLVPAVRAFIEFLAVELSQTMQ 300 Query: 301 QEND 304 QEND Sbjct: 301 QEND 304 >ref|YP_003748563.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] emb|CBJ54181.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 316 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 207/301 (68%), Positives = 242/301 (80%) Query: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 MEDLNDL LFAAVV HGSFS AARAL PKSRVSRRVA+LEQRLGVRLLQRSTR V VT+ Sbjct: 1 MEDLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTD 60 Query: 61 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHIFLAPLLARFLCAHPD 120 VGSAF+ CEAMT AARAA EV EHAG +P+GRLRVS P+GVAHIFLAP+L++FL A P+ Sbjct: 61 VGSAFYAQCEAMTQAARAAFEVAEHAGDKPSGRLRVSCPVGVAHIFLAPVLSKFLLAQPE 120 Query: 121 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDSNLVVRTFGTSQQILAASPAYIRQHGPFD 180 VRLEL+++NRRVDVIGEG+DVA+RVR+TL+DSNLV RTFG S Q+L ASP+++ +HGPFD Sbjct: 121 VRLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSGQVLVASPSFVAEHGPFD 180 Query: 181 SVEALQGQRGLGPGGMPGQAQRWRLHGPQGEVAEIDYVAAMVTDDMHLAMQAAIGGAGVA 240 S +L+G G+G GG G+ RWRL GP G +I+YV A VTDD+ L Q AI G G+A Sbjct: 181 SAASLRGMAGVGSGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGIA 240 Query: 241 LLPFNVCHAAIEGGQLRVLLPQHRGTPHQLHAVFPSRRGLVPAVRAFIEFMAVELSQTMQ 300 LPFN+C AI+ G+L VLLP HR HQ HAVFPSRRGLVPAVRAFIEF+A E M Sbjct: 241 QLPFNLCAEAIQDGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEEQPAIMA 300 Query: 301 Q 301 + Sbjct: 301 R 301 >emb|CAQ37122.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2] Length = 316 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 208/316 (65%), Positives = 245/316 (77%) Query: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 MEDLNDL LFAAVV HGSFS AARAL PKSRVSRRVA+LEQRLGVRLLQRSTR V VT+ Sbjct: 1 MEDLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTD 60 Query: 61 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHIFLAPLLARFLCAHPD 120 VGSAF+ CE MT AARAA EV EHAG +P+GRLRVS P+GVAH+FLAP+L++FL A P+ Sbjct: 61 VGSAFYAQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPE 120 Query: 121 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDSNLVVRTFGTSQQILAASPAYIRQHGPFD 180 VRLEL+++NRRVDVIGEG+DVA+RVR+TL+DSNLV RTFG S Q+L ASPA++ +HGPFD Sbjct: 121 VRLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPAFVAEHGPFD 180 Query: 181 SVEALQGQRGLGPGGMPGQAQRWRLHGPQGEVAEIDYVAAMVTDDMHLAMQAAIGGAGVA 240 S +L+G G+G GG G+ RWRL GP G +I+YV A VTDD+ L Q AI G G+A Sbjct: 181 SAASLRGVAGVGFGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGIA 240 Query: 241 LLPFNVCHAAIEGGQLRVLLPQHRGTPHQLHAVFPSRRGLVPAVRAFIEFMAVELSQTMQ 300 LPFN+C AI G+L VLLP HR HQ HAVFPSRRGLVPAVRAFIEF+A E M Sbjct: 241 QLPFNLCAEAIRDGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEEQPVIMA 300 Query: 301 QENDALLALLAHRPVR 316 + + ++ P R Sbjct: 301 RASSCYEEIIRRTPDR 316 >gb|AEG71377.1| chromosome initiation inhibitor (oric replication inhibitor) [Ralstonia solanacearum Po82] Length = 328 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 208/316 (65%), Positives = 245/316 (77%) Query: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 MEDLNDL LFAAVV HGSFS AARAL PKSRVSRRVA+LEQRLGVRLLQRSTR V VT+ Sbjct: 13 MEDLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTD 72 Query: 61 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHIFLAPLLARFLCAHPD 120 VGSAF+ CE MT AARAA EV EHAG +P+GRLRVS P+GVAH+FLAP+L++FL A PD Sbjct: 73 VGSAFYAQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPD 132 Query: 121 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDSNLVVRTFGTSQQILAASPAYIRQHGPFD 180 VRLEL+++NRRVDVIGEG+DVA+RVR+TL+DSNLV RTFG S Q+L ASP+++ +HGPFD Sbjct: 133 VRLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPSFVAEHGPFD 192 Query: 181 SVEALQGQRGLGPGGMPGQAQRWRLHGPQGEVAEIDYVAAMVTDDMHLAMQAAIGGAGVA 240 S +L+G G+G GG G+ RWRL GP G +I+YV A VTDD+ L Q AI G G+A Sbjct: 193 SAASLRGVAGVGFGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGIA 252 Query: 241 LLPFNVCHAAIEGGQLRVLLPQHRGTPHQLHAVFPSRRGLVPAVRAFIEFMAVELSQTMQ 300 LPFN+C AI G+L VLLP HR HQ HAVFPSRRGLVPAVRAFIEF+A E M Sbjct: 253 QLPFNLCAEAIREGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEEQPVFMA 312 Query: 301 QENDALLALLAHRPVR 316 + + ++ P R Sbjct: 313 RASSCYEEIIRRTPDR 328 >ref|ZP_00946604.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] ref|YP_002257142.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609] gb|EAP70921.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] emb|CAQ59023.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609] Length = 316 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 207/316 (65%), Positives = 245/316 (77%) Query: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 MEDLNDL LFAAVV HGSFS AARAL PKSRVSRRVA+LEQRLGVRLLQRSTR V VT+ Sbjct: 1 MEDLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTD 60 Query: 61 VGSAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHIFLAPLLARFLCAHPD 120 VGSAF+ CE MT AARAA EV EHAG +P+GRLRVS P+GVAH+FLAP+L++FL A P+ Sbjct: 61 VGSAFYAQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPE 120 Query: 121 VRLELELSNRRVDVIGEGFDVAMRVRSTLEDSNLVVRTFGTSQQILAASPAYIRQHGPFD 180 VRLEL+++NRRVDVIGEG+DVA+RVR+TL+DSNLV RTFG S Q+L ASP+++ +HGPFD Sbjct: 121 VRLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPSFVAEHGPFD 180 Query: 181 SVEALQGQRGLGPGGMPGQAQRWRLHGPQGEVAEIDYVAAMVTDDMHLAMQAAIGGAGVA 240 S +L+G G+G GG G+ RWRL GP G +I+YV A VTDD+ L Q AI G G+A Sbjct: 181 SAASLRGVAGVGFGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGIA 240 Query: 241 LLPFNVCHAAIEGGQLRVLLPQHRGTPHQLHAVFPSRRGLVPAVRAFIEFMAVELSQTMQ 300 LPFN+C AI G+L VLLP HR HQ HAVFPSRRGLVPAVRAFIEF+A E M Sbjct: 241 QLPFNLCAEAIRDGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEEQPVIMA 300 Query: 301 QENDALLALLAHRPVR 316 + + ++ P R Sbjct: 301 RASSCYEEIIRRTPDR 316