BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1877.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07794968.1| hypothetical protein PA39016_001650007 [Pseud... 372 e-101 dbj|BAK87730.1| hypothetical protein NCGM2_0847 [Pseudomonas aer... 370 e-100 ref|YP_003743135.1| LysR family transcripitonal regulator [Erwin... 353 3e-95 emb|CAQ56476.1| hypothetical protein RSMK03979 [Ralstonia solana... 347 1e-93 ref|ZP_00943019.1| Transcriptional regulators, LysR family [Rals... 347 2e-93 >ref|ZP_07794968.1| hypothetical protein PA39016_001650007 [Pseudomonas aeruginosa 39016] gb|EFQ40064.1| hypothetical protein PA39016_001650007 [Pseudomonas aeruginosa 39016] Length = 309 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 203/298 (68%), Positives = 249/298 (83%), Gaps = 1/298 (0%) Query: 22 MKKPDLRTLDLNLLKALAALLDERNVTRAA-RLGVSQPAMSGILTRLRENFDDPLFARSQ 80 +K +++++DLNLLKAL ALLDERNVTRAA RLG++QPA+SG+LTRLRE+F DPLFARSQ Sbjct: 7 IKMKNIKSMDLNLLKALDALLDERNVTRAAARLGLTQPALSGMLTRLRESFGDPLFARSQ 66 Query: 81 RGIVPTPRALELAQPVQRVLRDIDGLLHPPVFDPATAHLDFTIAATDYALRAVALPFLTA 140 RGIVPT RAL+L PV++VL +ID LL PP F+PATA L F+IAATDYALRAVA+PFL+A Sbjct: 67 RGIVPTQRALDLGMPVKQVLAEIDALLQPPSFNPATAQLTFSIAATDYALRAVAVPFLSA 126 Query: 141 LKQHAPFIRVALASMEDAPLQERLERGEIDLALTTPPDTPPGLHARRLFDEHYVCAMRED 200 LK+HAP +RV+L +E LQ +LERG+IDLAL TP TPP LHAR LF EHYVC +RED Sbjct: 127 LKRHAPRVRVSLVPVESGQLQNQLERGQIDLALLTPEITPPNLHARELFKEHYVCVLRED 186 Query: 201 HPVVRGQRLTLKQFCALDHALVSYAGDPFHGVTDEALAQRGLQRRVSLSVKRFLVLPEIL 260 HP G++LT+KQFCALDHALVSY G F GVTD+AL Q G +R V+LSVK FL+LP+IL Sbjct: 187 HPAAMGRKLTVKQFCALDHALVSYDGGGFRGVTDDALEQLGKRRSVTLSVKSFLILPDIL 246 Query: 261 RSTDLVAVVPSRLVAGVEGLKLLPPPLEIAGFTKTAAWHERTHRDPAQRWLRQLLFAT 318 R++D+VA++PSRLVAG++ L + PP++I GFTKTAAWHERTH DPA RW+R LLF + Sbjct: 247 RASDMVAILPSRLVAGMDKLAISLPPVKIPGFTKTAAWHERTHHDPAHRWIRALLFTS 304 >dbj|BAK87730.1| hypothetical protein NCGM2_0847 [Pseudomonas aeruginosa NCGM2.S1] Length = 309 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 202/298 (67%), Positives = 249/298 (83%), Gaps = 1/298 (0%) Query: 22 MKKPDLRTLDLNLLKALAALLDERNVTRAA-RLGVSQPAMSGILTRLRENFDDPLFARSQ 80 +K +++++DLNLLKAL ALLDERNVTRAA RLG++QPA+SG+LTRLRE+F DPLFARSQ Sbjct: 7 IKMKNIKSMDLNLLKALDALLDERNVTRAAARLGLTQPALSGMLTRLRESFGDPLFARSQ 66 Query: 81 RGIVPTPRALELAQPVQRVLRDIDGLLHPPVFDPATAHLDFTIAATDYALRAVALPFLTA 140 RGIVPT RAL+L PV++VL +I+ LL PP F+PATA L F+IAATDYALRAVA+PFL+A Sbjct: 67 RGIVPTQRALDLGMPVKQVLAEIEALLQPPSFNPATAQLTFSIAATDYALRAVAVPFLSA 126 Query: 141 LKQHAPFIRVALASMEDAPLQERLERGEIDLALTTPPDTPPGLHARRLFDEHYVCAMRED 200 LK+HAP +RV+L +E LQ +LERG+IDLAL TP TPP LHAR LF EHYVC +RED Sbjct: 127 LKRHAPRVRVSLVPVESGQLQNQLERGQIDLALLTPEITPPNLHARELFKEHYVCVLRED 186 Query: 201 HPVVRGQRLTLKQFCALDHALVSYAGDPFHGVTDEALAQRGLQRRVSLSVKRFLVLPEIL 260 HP G++LT+KQFCALDHALVSY G F GVTD+AL Q G +R V+LSVK FL+LP+IL Sbjct: 187 HPAAMGRKLTVKQFCALDHALVSYDGGGFRGVTDDALEQLGKRRSVTLSVKSFLILPDIL 246 Query: 261 RSTDLVAVVPSRLVAGVEGLKLLPPPLEIAGFTKTAAWHERTHRDPAQRWLRQLLFAT 318 R++D+VA++PSRLVAG++ L + PP++I GFTKTAAWHERTH DPA RW+R LLF + Sbjct: 247 RASDMVAILPSRLVAGMDKLAISLPPVKIPGFTKTAAWHERTHHDPAHRWIRALLFTS 304 >ref|YP_003743135.1| LysR family transcripitonal regulator [Erwinia billingiae Eb661] emb|CAX61288.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 297 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 190/294 (64%), Positives = 229/294 (77%), Gaps = 2/294 (0%) Query: 26 DLRTLDLNLLKALAALLDERNVTRAAR-LGVSQPAMSGILTRLRENFDDPLFARSQRGIV 84 D+RTLDLNLLKA +ALL+ERNVTRAAR L ++QPA+SG+L RLRE+F+DPLF R+ GIV Sbjct: 3 DIRTLDLNLLKAFSALLEERNVTRAARRLSLTQPAVSGMLARLRESFNDPLFVRAPHGIV 62 Query: 85 PTPRALELAQPVQRVLRDIDGLLHPPVFDPATAHLDFTIAATDYALRAVALPFLTALKQH 144 PTPRALELA+PV ++LRDIDG+L P FDPA + + TIA+TDYALRAV +PFL L+ Sbjct: 63 PTPRALELAEPVAKILRDIDGMLQPAAFDPAQSEMQLTIASTDYALRAVVVPFLARLRTL 122 Query: 145 APFIRVALASMEDAPLQERLERGEIDLALTTPPDTPPGLHARRLFDEHYVCAMREDHPVV 204 AP +++A+ +E+ LQ++LERGEIDLA+ TP TPP LHARRLFDE YVC +RE HP Sbjct: 123 APGLQIAVRPVENRQLQQQLERGEIDLAIVTPESTPPELHARRLFDEEYVCMLREGHPAA 182 Query: 205 RGQRLTLKQFCALDHALVSYAGDPFHGVTDEALAQRGLQRRVSLSVKRFLVLPEILRSTD 264 ++LTL +FCALDHALVSY G+ F GVTD AL GL+R+V+LSV FLVLPEILR +D Sbjct: 183 -AKKLTLTRFCALDHALVSYEGEMFSGVTDSALLALGLKRKVTLSVTSFLVLPEILRDSD 241 Query: 265 LVAVVPSRLVAGVEGLKLLPPPLEIAGFTKTAAWHERTHRDPAQRWLRQLLFAT 318 L+AVVP RL GL LL PPL I GFTKT AWHERTH RW+RQ LF T Sbjct: 242 LIAVVPKRLAVNTHGLTLLAPPLAIPGFTKTVAWHERTHTSAGHRWIRQQLFDT 295 >emb|CAQ56476.1| hypothetical protein RSMK03979 [Ralstonia solanacearum MolK2] Length = 321 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 204/296 (68%), Positives = 237/296 (80%), Gaps = 1/296 (0%) Query: 26 DLRTLDLNLLKALAALLDERNVTRAA-RLGVSQPAMSGILTRLRENFDDPLFARSQRGIV 84 D+RTLDLNLLKAL ALLDERNVTRAA RL ++QPAMSG+LTRLRE+FDDPLF R+QRG+V Sbjct: 3 DIRTLDLNLLKALDALLDERNVTRAAVRLAITQPAMSGMLTRLRESFDDPLFVRTQRGVV 62 Query: 85 PTPRALELAQPVQRVLRDIDGLLHPPVFDPATAHLDFTIAATDYALRAVALPFLTALKQH 144 PT RALELA PV++VL ++D LL PP FDP+TA L ++AATDY LRAV +PFL AL+Q Sbjct: 63 PTQRALELAGPVKQVLGEVDALLQPPTFDPSTARLTLSMAATDYGLRAVVVPFLLALRQR 122 Query: 145 APFIRVALASMEDAPLQERLERGEIDLALTTPPDTPPGLHARRLFDEHYVCAMREDHPVV 204 AP +R+A ++DA +Q +LERGE+DLAL TP TP L+AR LF+E YVCA+R DHP Sbjct: 123 APHVRLAARPVKDALIQAQLERGELDLALLTPDSTPADLYARHLFEERYVCALRRDHPDA 182 Query: 205 RGQRLTLKQFCALDHALVSYAGDPFHGVTDEALAQRGLQRRVSLSVKRFLVLPEILRSTD 264 RL+L +FCALDHALVSY G F GVTDEALA+ G RRV+LSV FLVLPEILR++D Sbjct: 183 SDGRLSLDRFCALDHALVSYVGGGFSGVTDEALARLGRTRRVTLSVGSFLVLPEILRASD 242 Query: 265 LVAVVPSRLVAGVEGLKLLPPPLEIAGFTKTAAWHERTHRDPAQRWLRQLLFATAG 320 LVAVVP RLVAGVEGL LL PP+EI GFTK AWH RTHR P RWLR LLF T G Sbjct: 243 LVAVVPRRLVAGVEGLALLDPPVEIPGFTKVVAWHARTHRHPGHRWLRALLFETCG 298 >ref|ZP_00943019.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] ref|YP_002258410.1| hypothetical protein RSIPO_00201 [Ralstonia solanacearum IPO1609] gb|EAP74479.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] emb|CAQ60331.1| hypothetical protein RSIPO_00201 [Ralstonia solanacearum IPO1609] Length = 321 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 203/296 (68%), Positives = 237/296 (80%), Gaps = 1/296 (0%) Query: 26 DLRTLDLNLLKALAALLDERNVTRAA-RLGVSQPAMSGILTRLRENFDDPLFARSQRGIV 84 D+RTLDLNLLKAL ALLDERNVTRAA RL ++QPAMSG+LTRLRE+FDDPLF R+QRG+V Sbjct: 3 DIRTLDLNLLKALDALLDERNVTRAAVRLAITQPAMSGMLTRLRESFDDPLFVRTQRGVV 62 Query: 85 PTPRALELAQPVQRVLRDIDGLLHPPVFDPATAHLDFTIAATDYALRAVALPFLTALKQH 144 PT RALELA PV++VL ++D LL PP FDP+TA L ++AATDY LRAV +PFL AL+Q Sbjct: 63 PTQRALELAGPVKQVLGEVDALLQPPTFDPSTARLTLSMAATDYGLRAVVVPFLLALRQR 122 Query: 145 APFIRVALASMEDAPLQERLERGEIDLALTTPPDTPPGLHARRLFDEHYVCAMREDHPVV 204 AP +R+A ++DA +Q +LERGE+DLAL TP TP L+AR LF+E YVCA+R DHP Sbjct: 123 APHVRLAARPVKDALIQAQLERGELDLALLTPDSTPADLYARHLFEERYVCALRRDHPDA 182 Query: 205 RGQRLTLKQFCALDHALVSYAGDPFHGVTDEALAQRGLQRRVSLSVKRFLVLPEILRSTD 264 RL+L +FCALDHALVSY G F GVTDEALA+ G RRV++SV FLVLPEILR++D Sbjct: 183 SDGRLSLDRFCALDHALVSYVGGGFSGVTDEALARLGRTRRVTVSVGSFLVLPEILRASD 242 Query: 265 LVAVVPSRLVAGVEGLKLLPPPLEIAGFTKTAAWHERTHRDPAQRWLRQLLFATAG 320 LVAVVP RLVAGVEGL LL PP+EI GFTK AWH RTHR P RWLR LLF T G Sbjct: 243 LVAVVPRRLVAGVEGLALLDPPVEIPGFTKVVAWHARTHRHPGHRWLRALLFETCG 298