BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1872.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753648.1| putative transcription regulator protein [Co...   137   7e-31
ref|YP_373503.1| LysR family transcriptional regulator [Burkhold...   134   6e-30
ref|NP_518755.1| transcription regulator protein [Ralstonia sola...   132   2e-29
ref|YP_004847921.1| LysR family transcriptional regulator [Pseud...   130   5e-29
ref|YP_003003079.1| LysR family transcriptional regulator [Dicke...   130   5e-29

>ref|YP_004753648.1| putative transcription regulator protein [Collimonas fungivorans
           Ter331]
 gb|AEK62825.1| putative transcription regulator protein [Collimonas fungivorans
           Ter331]
          Length = 331

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 87/118 (73%)

Query: 1   MDTSQRVRAIISFVQAADSGSFAGAGRTLGISSAAVSQNVAGLETALGVRLMNRTTRSLN 60
           MD +QRVRAI+SFVQ AD GSFA A R LG+SSA+VS+NVAGLE ALGVRLMNRTTR+L 
Sbjct: 15  MDATQRVRAILSFVQVADGGSFAAAARKLGVSSASVSKNVAGLERALGVRLMNRTTRTLK 74

Query: 61  LTEEGSAFLRQARIALDALEQATDDVVAARATPTGRVRRPRTIAAAAAGAEPALSGLV 118
           LT EG  FL QARIALDAL+ A D V A R  P+GRVR   + A       PAL GL+
Sbjct: 75  LTSEGVTFLEQARIALDALDLAVDTVAAQRVEPSGRVRISTSAAFGRDQLMPALPGLL 132


>ref|YP_373503.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gb|ABB12859.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 318

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 79/119 (66%), Positives = 90/119 (75%)

Query: 1   MDTSQRVRAIISFVQAADSGSFAGAGRTLGISSAAVSQNVAGLETALGVRLMNRTTRSLN 60
           MD SQR RAI+SFV AAD GSFA AGR LGI+SAAVS+NVAGLE ALGVRLMNRTTR+L 
Sbjct: 1   MDVSQRTRAILSFVHAADGGSFAAAGRMLGITSAAVSKNVAGLEQALGVRLMNRTTRTLK 60

Query: 61  LTEEGSAFLRQARIALDALEQATDDVVAARATPTGRVRRPRTIAAAAAGAEPALSGLVG 119
           LT+EGS FLR+ARIALDAL+ A D +VA R  P GRVR   + A      +P L GL+ 
Sbjct: 61  LTDEGSVFLREARIALDALDSAVDSIVAQRLGPQGRVRISTSAAFGREHLQPVLPGLLA 119


>ref|NP_518755.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 emb|CAD14164.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 318

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/119 (66%), Positives = 90/119 (75%)

Query: 1   MDTSQRVRAIISFVQAADSGSFAGAGRTLGISSAAVSQNVAGLETALGVRLMNRTTRSLN 60
           MD+S RVRAI+SFVQAA +GSFA AGR LGISSAAVS+NVAGLE AL VRLMNRTTR+L 
Sbjct: 1   MDSSHRVRAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQ 60

Query: 61  LTEEGSAFLRQARIALDALEQATDDVVAARATPTGRVRRPRTIAAAAAGAEPALSGLVG 119
           LTEEG+ FLRQAR+AL+AL+ A D V A R  PTGRVR   + A       P L GL+ 
Sbjct: 61  LTEEGAVFLRQARLALEALDVAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLA 119


>ref|YP_004847921.1| LysR family transcriptional regulator [Pseudogulbenkiania sp. NH8B]
 dbj|BAK77507.1| transcriptional regulator, LysR family [Pseudogulbenkiania sp.
           NH8B]
          Length = 317

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/118 (68%), Positives = 88/118 (74%)

Query: 1   MDTSQRVRAIISFVQAADSGSFAGAGRTLGISSAAVSQNVAGLETALGVRLMNRTTRSLN 60
           MD+SQRVRAI+SFVQAA SGSFA A R+LGISSAAVS+NVA LE  LGVRLMNRTTRSL 
Sbjct: 1   MDSSQRVRAILSFVQAAQSGSFAAAARSLGISSAAVSKNVASLEQGLGVRLMNRTTRSLK 60

Query: 61  LTEEGSAFLRQARIALDALEQATDDVVAARATPTGRVRRPRTIAAAAAGAEPALSGLV 118
           LT EG AFL QARIALDAL+ A D V A R  P GRVR   + A       PAL GL+
Sbjct: 61  LTAEGLAFLEQARIALDALDAAVDTVAAQRVVPAGRVRISTSAAFGRDQVMPALPGLL 118


>ref|YP_003003079.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gb|ACT05600.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 319

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 77/117 (65%), Positives = 89/117 (76%)

Query: 1   MDTSQRVRAIISFVQAADSGSFAGAGRTLGISSAAVSQNVAGLETALGVRLMNRTTRSLN 60
           M+ SQRVRAI+SFVQA D+GSFA AGRTLGISSAAVS+NVAGLE  LGVRLMNRTTR+LN
Sbjct: 1   MEISQRVRAIVSFVQAVDTGSFAAAGRTLGISSAAVSKNVAGLEQTLGVRLMNRTTRTLN 60

Query: 61  LTEEGSAFLRQARIALDALEQATDDVVAARATPTGRVRRPRTIAAAAAGAEPALSGL 117
           LT+EG+AFLRQARIAL+AL+ A D +   RA   G VR   ++        P L GL
Sbjct: 61  LTDEGAAFLRQARIALEALDAAVDVLAEQRAEIGGHVRLSCSVGFGHDHLMPVLPGL 117