BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1871.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753648.1| putative transcription regulator protein [Co... 275 3e-72 ref|YP_004826614.1| LysR family transcriptional regulator [Enter... 275 4e-72 ref|YP_003747500.1| LysR family transcriptional regulator [Ralst... 269 2e-70 ref|YP_003003079.1| LysR family transcriptional regulator [Dicke... 266 2e-69 gb|AEG70929.1| transcriptional regulator of glycine cleavage sys... 266 3e-69 >ref|YP_004753648.1| putative transcription regulator protein [Collimonas fungivorans Ter331] gb|AEK62825.1| putative transcription regulator protein [Collimonas fungivorans Ter331] Length = 331 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 134/220 (60%), Positives = 165/220 (75%) Query: 15 RHRPGACAGREQLLPLLPGLSQRYPALSVEVDFDDRISELVQDGYDLAIRGGRIADSSLV 74 R A GR+QL+P LPGL +RYP LSVEVDFDDR +L+ +GYDLA+RGG+I DS+LV Sbjct: 112 RISTSAAFGRDQLMPALPGLLERYPELSVEVDFDDRCIDLINEGYDLALRGGQIPDSALV 171 Query: 75 SRSICKLNLALVASPAYLEARSTPRRPQDLHKHSLITRKFLGGKVSPWNFQGSDGSIMTW 134 SR+IC LN+AL ASPAYL PR PQDL +H +I R+FL G S W+F+ DGSI T+ Sbjct: 172 SRTICGLNMALFASPAYLGRHGVPRTPQDLKQHKIINRRFLNGSYSKWSFRSMDGSIETF 231 Query: 135 NTEHALLTLSSPEALVQAALAGMGIAEVGVHHAWRYLQRGRLKVLLLRSHHPGNYEMCLQ 194 E + +TLSSPEAL QAAL G+GIA+VGVHHAW +L+ G LKV+L HHPG+YEM LQ Sbjct: 232 EPEASTVTLSSPEALTQAALLGLGIAQVGVHHAWPHLRAGTLKVVLNDCHHPGDYEMVLQ 291 Query: 195 YPHRALIAPRVRVAVDYLLEGFAASEELHVPLAALRKYAA 234 YPHRAL+APRV ++YLLE F+ + LHVPL L+ Y A Sbjct: 292 YPHRALLAPRVHAVINYLLEVFSKDDFLHVPLKKLQSYLA 331 >ref|YP_004826614.1| LysR family transcriptional regulator [Enterobacter asburiae LF7a] gb|AEN62829.1| transcriptional regulator, LysR family [Enterobacter asburiae LF7a] Length = 318 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 135/222 (60%), Positives = 162/222 (72%) Query: 13 HARHRPGACAGREQLLPLLPGLSQRYPALSVEVDFDDRISELVQDGYDLAIRGGRIADSS 72 H R A GREQLLP+LPGL RYP +SVEVDFDDR+++L+ DGYDL IRGGRI DSS Sbjct: 96 HVRISTSAAFGREQLLPVLPGLRVRYPGISVEVDFDDRVTDLIADGYDLTIRGGRIVDSS 155 Query: 73 LVSRSICKLNLALVASPAYLEARSTPRRPQDLHKHSLITRKFLGGKVSPWNFQGSDGSIM 132 L+SR +C+L ALVASP YL P+ P DL H LI R+FLGG+VSPW F+GSDGS+ Sbjct: 156 LISRPVCQLKTALVASPEYLARCGVPKTPADLANHHLIARRFLGGRVSPWGFRGSDGSLT 215 Query: 133 TWNTEHALLTLSSPEALVQAALAGMGIAEVGVHHAWRYLQRGRLKVLLLRSHHPGNYEMC 192 T + A +TLS+PEA QAAL G+GIA+VGVHHA +LQ G LK +L+ H PGNYEM Sbjct: 216 TLEPDAAAVTLSAPEAQTQAALLGLGIAQVGVHHALAHLQAGALKAVLVGQHDPGNYEMV 275 Query: 193 LQYPHRALIAPRVRVAVDYLLEGFAASEELHVPLAALRKYAA 234 +QYPHRAL+APRV+ V+YLL+ F LH PL L YAA Sbjct: 276 IQYPHRALVAPRVKATVEYLLDAFRQDASLHFPLERLADYAA 317 >ref|YP_003747500.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] emb|CBJ53083.1| Transcriptional regulatory protein LysR family [Ralstonia solanacearum CFBP2957] Length = 322 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 138/213 (64%), Positives = 163/213 (76%), Gaps = 1/213 (0%) Query: 23 GREQLLPLLPGLSQRYPALSVEVDFDDRISELVQDGYDLAIRGGRIADSSLVSRSICKLN 82 GREQL+P LPGL RYPALSVEVDFDDRI +LV+DGYDLAIRGG I DS+LVSR I +LN Sbjct: 110 GREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAIRGGSIPDSALVSRPIFRLN 169 Query: 83 LALVASPAYLEARSTPRRPQDLHKHSLITRKFLGGKVSPWNFQGSDGSIMTWN-TEHALL 141 L LVASP YL P+ PQ L H LI R+FLGG V+PW F +GS T++ + A+L Sbjct: 170 LVLVASPDYLARHGVPQTPQALRSHRLIARRFLGGAVAPWGFSAENGSFTTFDPADAAVL 229 Query: 142 TLSSPEALVQAALAGMGIAEVGVHHAWRYLQRGRLKVLLLRSHHPGNYEMCLQYPHRALI 201 TLS+PE++VQAA +G+GIA VGVH AW +L G LKV+L R H PGNYEM +QYPHRAL+ Sbjct: 230 TLSAPESVVQAACSGVGIARVGVHLAWEHLLSGALKVVLHRYHQPGNYEMVMQYPHRALM 289 Query: 202 APRVRVAVDYLLEGFAASEELHVPLAALRKYAA 234 APRV+V +DYLLE FA + LHVPL AL YAA Sbjct: 290 APRVQVTLDYLLEAFAQDKNLHVPLEALGAYAA 322 >ref|YP_003003079.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gb|ACT05600.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 319 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 133/220 (60%), Positives = 160/220 (72%) Query: 13 HARHRPGACAGREQLLPLLPGLSQRYPALSVEVDFDDRISELVQDGYDLAIRGGRIADSS 72 H R G + L+P+LPGL RYP+L++E DFDDR+ +LV+DGYDLAIRGG+I DS+ Sbjct: 96 HVRLSCSVGFGHDHLMPVLPGLQVRYPSLTIEADFDDRVVDLVRDGYDLAIRGGQIVDSA 155 Query: 73 LVSRSICKLNLALVASPAYLEARSTPRRPQDLHKHSLITRKFLGGKVSPWNFQGSDGSIM 132 LVSR IC+LN+ALVASP YL P PQDL H LI R+FLGGKVSPW F+ +G+ Sbjct: 156 LVSRPICRLNMALVASPDYLARAGVPATPQDLPSHRLIVRRFLGGKVSPWIFRDREGNQT 215 Query: 133 TWNTEHALLTLSSPEALVQAALAGMGIAEVGVHHAWRYLQRGRLKVLLLRSHHPGNYEMC 192 + N + A +TLS+PEALVQAA G+GIA+VGVH AW L+ GRLKV+L H PGNYEM Sbjct: 216 SLNLDSAAMTLSAPEALVQAASLGLGIAQVGVHTAWPALREGRLKVVLPDLHDPGNYEMV 275 Query: 193 LQYPHRALIAPRVRVAVDYLLEGFAASEELHVPLAALRKY 232 LQYPHRAL+APRVR +DYLL FA LHVPL L Y Sbjct: 276 LQYPHRALMAPRVRATLDYLLAAFADDNALHVPLHTLNDY 315 >gb|AEG70929.1| transcriptional regulator of glycine cleavage system operon, lysr family [Ralstonia solanacearum Po82] Length = 322 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 136/213 (63%), Positives = 164/213 (76%), Gaps = 1/213 (0%) Query: 23 GREQLLPLLPGLSQRYPALSVEVDFDDRISELVQDGYDLAIRGGRIADSSLVSRSICKLN 82 GREQL+P LPGL RYPALSVEVDFDDRI +LV+DGYDLAIRGG I DS+LVSR I +LN Sbjct: 110 GREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAIRGGSIPDSALVSRPIFRLN 169 Query: 83 LALVASPAYLEARSTPRRPQDLHKHSLITRKFLGGKVSPWNFQGSDGSIMTWN-TEHALL 141 L LVASP YL P+ PQ L H LI R+FLGG V+PW F +GS+ T++ + A+L Sbjct: 170 LVLVASPDYLARHGVPQTPQALRSHRLIARRFLGGAVAPWGFSAENGSLTTFDPADAAVL 229 Query: 142 TLSSPEALVQAALAGMGIAEVGVHHAWRYLQRGRLKVLLLRSHHPGNYEMCLQYPHRALI 201 TLS+PE++VQAA +G+GIA VGVH AW +L+ G LKV+L R H PG+YEM +QYPHRAL+ Sbjct: 230 TLSAPESVVQAACSGVGIARVGVHLAWEHLRSGALKVVLHRYHQPGHYEMVMQYPHRALM 289 Query: 202 APRVRVAVDYLLEGFAASEELHVPLAALRKYAA 234 APRV+ +DYLLE FA + LHVPL AL YAA Sbjct: 290 APRVQATLDYLLEAFAEDQNLHVPLEALGAYAA 322