BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1868.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001796734.1| transcriptional regulator LysR family [Cupri... 468 e-130 ref|YP_001116725.1| LysR family transcriptional regulator [Burkh... 445 e-123 ref|NP_299041.1| LysR family transcriptional regulator [Xylella ... 441 e-122 ref|YP_004486153.1| LysR family transcriptional regulator [Delft... 440 e-121 ref|YP_004353869.1| LysR family transcriptional regulator [Pseud... 440 e-121 >ref|YP_001796734.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] emb|CAP63497.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 295 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 228/294 (77%), Positives = 259/294 (88%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M++RNLNDLL FVTVAREGSFTRAAA+LGVTQSALSQA+RGLEERL+IRLLTRTTRS+S Sbjct: 1 MVRRNLNDLLAFVTVAREGSFTRAAASLGVTQSALSQAVRGLEERLRIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+Q+IG+RFDEIEAELDALTALR+KP GTVRITCGD ++ +LLP+L PLLQ+Y Sbjct: 61 TAAGERLMQAIGHRFDEIEAELDALTALRDKPAGTVRITCGDNVLHTILLPRLTPLLQEY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDIKLEFD++Y RDIVADRFDAGVR G TID+DMIAVPIGPPLRM V ASP YF +P Sbjct: 121 PDIKLEFDVNYGFRDIVADRFDAGVRLGNTIDKDMIAVPIGPPLRMAVVASPAYFAAHPP 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P DLMA CINQRMP+SGGLYVWDFE+ G ++NVRVDG LIFNT PQ+DAALAGLG Sbjct: 181 PKTPKDLMAHRCINQRMPTSGGLYVWDFERRGRQVNVRVDGPLIFNTTQPQVDAALAGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALR 294 + LLPED+L ++E+G+LVRVLEDWCP F GYHLYYPSRRQPSPAF+LVV LR Sbjct: 241 ITLLPEDELMPHIEAGRLVRVLEDWCPKFNGYHLYYPSRRQPSPAFALVVQVLR 294 >ref|YP_001116725.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] ref|YP_001584763.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001948125.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|ABO57260.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] gb|ABX18471.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] dbj|BAG45589.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 297 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 222/294 (75%), Positives = 255/294 (86%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M +RNLNDLL FVT+AREGSFTRAAATLGVTQSALSQ IR +EE LQIRLL+RTTRS+S Sbjct: 1 MARRNLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 TPAGERL+Q+IG+R DEI+AELDALT LREKP GTVRITCGD M+ +LLPKLAP+LQ+Y Sbjct: 61 TPAGERLLQAIGHRLDEIDAELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 P+IKLEFD++Y RDIVADRFDAGVR G TID+DMIAVPIGP LRM V SP YF P+ Sbjct: 121 PEIKLEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPIGPALRMAVVGSPAYFANRPI 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P DLM +CINQRMP+SGGLYVWDFE+ G+K+NVRVDG LIFNT PQ+DAAL GLG Sbjct: 181 PKKPQDLMHHNCINQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALR 294 + LLPED+L ++ SG+LVRVLEDWCP F+GYHLYYPSRRQPSPAFS+V++ALR Sbjct: 241 LTLLPEDELMPHIVSGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALR 294 >ref|NP_299041.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c] gb|AAF84561.1|AE003998_3 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c] Length = 324 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 214/302 (70%), Positives = 253/302 (83%), Gaps = 1/302 (0%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M +RNLNDLL FVT+AREGSFTRAAA LGVTQSALSQAI GLE RLQIRLLTRTTRS+S Sbjct: 1 MARRNLNDLLYFVTIAREGSFTRAAAHLGVTQSALSQAINGLEARLQIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+ +IG+RFDEIE+ELD LT LR+KP GTVRITCGD +++ +LPKL PLL++Y Sbjct: 61 TAAGERLLNAIGHRFDEIESELDELTELRDKPAGTVRITCGDHILRTTILPKLTPLLREY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDI +EFD++Y RDIVADRFDAGVR G TID+DMIAVPIGPPLRM +AASPEYF +PV Sbjct: 121 PDINIEFDVNYGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPPLRMAIAASPEYFASHPV 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P+DL+ +CIN RM +SGG+YVWDF + G+++NVRVDG LIFNT P +DAAL GLG Sbjct: 181 PKKPHDLLNHNCINMRMQTSGGIYVWDFMRRGKQLNVRVDGQLIFNTTPNMVDAALVGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALRY-ESRP 299 + LPE++ ++E G+L+RVLEDWC F GY LYYPSRRQPSPAFSLVV+ALRY E RP Sbjct: 241 IAALPEEEFAPHIEEGRLMRVLEDWCEPFSGYFLYYPSRRQPSPAFSLVVDALRYSEGRP 300 Query: 300 RQ 301 + Sbjct: 301 SK 302 >ref|YP_004486153.1| LysR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF87798.1| transcriptional regulator, LysR family [Delftia sp. Cs1-4] Length = 297 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 224/295 (75%), Positives = 256/295 (86%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M +RNLNDLL FVTVAREGSFTRAAA LGVTQSALSQ +R LEERLQIRLLTRTTRS+S Sbjct: 1 MARRNLNDLLAFVTVAREGSFTRAAAALGVTQSALSQTVRALEERLQIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+Q+IG+RFDEIEAELDALTALR+KPGGTVRITCGD M+Q LLP+LAPLL Y Sbjct: 61 TAAGERLMQAIGHRFDEIEAELDALTALRDKPGGTVRITCGDYMLQSTLLPRLAPLLLAY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDI +EFD+ Y RDIVA+RFDAGVR G TID+DMIAVPIGPPLRM V +SP YF + + Sbjct: 121 PDICMEFDVYYGFRDIVAERFDAGVRLGSTIDKDMIAVPIGPPLRMAVVSSPGYFAEHGI 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P +P DLMA CINQRM +SGGLYVW+FE+ G K+NVRVDG LIFNT PQIDA+LAGLG Sbjct: 181 PKNPQDLMAHRCINQRMVTSGGLYVWEFERRGRKMNVRVDGPLIFNTTQPQIDASLAGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALRY 295 + LLPED++ +++SGQL RVLEDWCP F+G+HLYYPSRRQPSPAFSLVV+ALR+ Sbjct: 241 ITLLPEDEVMPWIQSGQLQRVLEDWCPRFDGHHLYYPSRRQPSPAFSLVVDALRW 295 >ref|YP_004353869.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68865.1| putative transcriptional regulator, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 301 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 213/294 (72%), Positives = 243/294 (82%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 MIKRNLNDLL FVTVAREGSFTRAA LGVTQSALSQAI GLE RLQIRLLTRTTRS+S Sbjct: 5 MIKRNLNDLLSFVTVAREGSFTRAAGALGVTQSALSQAINGLEARLQIRLLTRTTRSVSP 64 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+Q+IGNRFDEIEAELD LT +R+KP GTVRITCGD +++ LLPKL LL Y Sbjct: 65 TVAGERLLQAIGNRFDEIEAELDMLTEMRDKPAGTVRITCGDHVLRTTLLPKLTELLHDY 124 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PD+ +EFD+ Y RDIVADRFDAGVR G TID+DM+AVPIGPPLRM V AS YF + + Sbjct: 125 PDVNVEFDVCYGFRDIVADRFDAGVRLGDTIDKDMVAVPIGPPLRMAVVASQAYFAAHAI 184 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P DLM+ CINQRM +SGGLYVWDFE+ G+++NVRVDG LIFNT + AA+AGLG Sbjct: 185 PKAPRDLMSHRCINQRMQTSGGLYVWDFERRGKQVNVRVDGQLIFNTSTHIVQAAVAGLG 244 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALR 294 V LPE++ + YL+ G+LVRVLEDWCP F GY+LYYPSRRQPSPAF+LV NALR Sbjct: 245 VAYLPEEEFEPYLQEGRLVRVLEDWCPPFSGYYLYYPSRRQPSPAFTLVANALR 298