BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1863.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001862863.1| gluconate 2-dehydrogenase (acceptor) [Burkho... 222 1e-56 ref|YP_004353332.1| gluconate 2-dehydrogenase [Pseudomonas brass... 219 7e-56 ref|ZP_06637568.1| gluconate 2-dehydrogenase cytochrome c subuni... 216 6e-55 ref|ZP_04947380.1| Cytochrome c [Burkholderia dolosa AUO158] >gi... 216 7e-55 ref|YP_001584189.1| gluconate 2-dehydrogenase (acceptor) [Burkho... 216 9e-55 >ref|YP_001862863.1| gluconate 2-dehydrogenase (acceptor) [Burkholderia phymatum STM815] gb|ACC75817.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia phymatum STM815] Length = 454 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 102/137 (74%), Positives = 116/137 (84%) Query: 1 MATPLGAIYATNITPDRGSGIGDYSLAEFDRALRHGVARDGHRLYPAMPYPSYAKMSDED 60 MATP+GAI+ATNITPD+ +GIG YSLA+FDRALR GVARDGHRLYPAMPYPSYAK+ +D Sbjct: 80 MATPMGAIFATNITPDKETGIGTYSLADFDRALRQGVARDGHRLYPAMPYPSYAKLGVDD 139 Query: 61 VSALYAYFMHGVKPVVQANQESDIPWPLNMRWPLAFWNLAFTSPHPYQPDPKQDALWNRG 120 V ALYAYFMHGV+PV Q N++S+IPWP+NMRWPLA WN F P Y+ DALWNRG Sbjct: 140 VRALYAYFMHGVQPVRQENRQSEIPWPMNMRWPLALWNAVFVKPRAYEVKASGDALWNRG 199 Query: 121 AYLVQGAGHCGSCHTER 137 AY+VQGAGHCGSCHT R Sbjct: 200 AYVVQGAGHCGSCHTPR 216 >ref|YP_004353332.1| gluconate 2-dehydrogenase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68328.1| putative gluconate 2-dehydrogenase (acceptor) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 446 Score = 219 bits (559), Expect = 7e-56, Method: Composition-based stats. Identities = 103/137 (75%), Positives = 117/137 (85%) Query: 1 MATPLGAIYATNITPDRGSGIGDYSLAEFDRALRHGVARDGHRLYPAMPYPSYAKMSDED 60 MATP+G+IYATNITPD+ +GIG+YSLA+FDRA+R GVA DGHRLYPAMPYPSYAK+SD+D Sbjct: 75 MATPMGSIYATNITPDKQTGIGNYSLADFDRAVRSGVAADGHRLYPAMPYPSYAKLSDDD 134 Query: 61 VSALYAYFMHGVKPVVQANQESDIPWPLNMRWPLAFWNLAFTSPHPYQPDPKQDALWNRG 120 V ALYA+FM GVKP Q NQ++ IPWPLNMRWPLA WN AF YQ P +DALWNRG Sbjct: 135 VRALYAFFMAGVKPAQQQNQQTHIPWPLNMRWPLALWNTAFVDDGAYQAKPSEDALWNRG 194 Query: 121 AYLVQGAGHCGSCHTER 137 AY+VQGAGHCGSCHT R Sbjct: 195 AYIVQGAGHCGSCHTPR 211 >ref|ZP_06637568.1| gluconate 2-dehydrogenase cytochrome c subunit [Serratia odorifera DSM 4582] gb|EFE97613.1| gluconate 2-dehydrogenase cytochrome c subunit [Serratia odorifera DSM 4582] Length = 459 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 103/145 (71%), Positives = 118/145 (81%), Gaps = 5/145 (3%) Query: 1 MATPLGAIYATNITPDRGSGIGDYSLAEFDRALRHGVARDGHRLYPAMPYPSYAKMSDED 60 MATP+GAI+ATNITPD+ +GIG Y LA+FDRALR GVA DGHRLYPAMPYPSYAK+SDED Sbjct: 80 MATPMGAIFATNITPDKQTGIGSYRLADFDRALRQGVAADGHRLYPAMPYPSYAKLSDED 139 Query: 61 VSALYAYFMHGVKPVVQANQESDIPWPLNMRWPLAFWNLAFTSPHPYQPDP-----KQDA 115 V ALYA+F+HGV PV + N+ S+IPWPLNMRWPLA WN FT PYQ +++A Sbjct: 140 VQALYAFFLHGVSPVSEQNRPSEIPWPLNMRWPLALWNALFTESEPYQAKNLTNTGEEEA 199 Query: 116 LWNRGAYLVQGAGHCGSCHTEREGA 140 LWNRGAY+VQGAGHCGSCHT R A Sbjct: 200 LWNRGAYIVQGAGHCGSCHTPRSVA 224 >ref|ZP_04947380.1| Cytochrome c [Burkholderia dolosa AUO158] gb|EAY70551.1| Cytochrome c [Burkholderia dolosa AUO158] Length = 436 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 102/137 (74%), Positives = 111/137 (81%) Query: 1 MATPLGAIYATNITPDRGSGIGDYSLAEFDRALRHGVARDGHRLYPAMPYPSYAKMSDED 60 M TP+GAIY TNITPDR +GIG Y+ AEF ALR GVA+DGHRLYPAMPYPSYAK+ D+D Sbjct: 72 MDTPMGAIYTTNITPDRDTGIGGYTEAEFGDALRKGVAKDGHRLYPAMPYPSYAKLRDDD 131 Query: 61 VSALYAYFMHGVKPVVQANQESDIPWPLNMRWPLAFWNLAFTSPHPYQPDPKQDALWNRG 120 V ALYAYFMHGV+PV QAN+ SDIPWPLNMRWPLA WN F PY P +DA WNRG Sbjct: 132 VKALYAYFMHGVEPVKQANRPSDIPWPLNMRWPLALWNAVFLDTTPYADKPSKDATWNRG 191 Query: 121 AYLVQGAGHCGSCHTER 137 AYLVQG GHCGSCHT R Sbjct: 192 AYLVQGLGHCGSCHTPR 208 >ref|YP_001584189.1| gluconate 2-dehydrogenase (acceptor) [Burkholderia multivorans ATCC 17616] ref|YP_001948683.1| class I cytochrome c [Burkholderia multivorans ATCC 17616] gb|ABX17897.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia multivorans ATCC 17616] dbj|BAG46147.1| class I cytochrome c [Burkholderia multivorans ATCC 17616] Length = 434 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 102/137 (74%), Positives = 113/137 (82%) Query: 1 MATPLGAIYATNITPDRGSGIGDYSLAEFDRALRHGVARDGHRLYPAMPYPSYAKMSDED 60 MATP+GAIY TNITPD +GIG Y+ AEF ALR GVA+DGHRLYPAMPYPSYAK+ D+D Sbjct: 70 MATPMGAIYTTNITPDTETGIGGYTEAEFADALRKGVAKDGHRLYPAMPYPSYAKLRDDD 129 Query: 61 VSALYAYFMHGVKPVVQANQESDIPWPLNMRWPLAFWNLAFTSPHPYQPDPKQDALWNRG 120 V ALYAYFMHGV+PV QAN+ SDIPWPLNMRWPLA WN+ F PY P +DA+WNRG Sbjct: 130 VKALYAYFMHGVEPVKQANRPSDIPWPLNMRWPLALWNMVFLDTTPYADKPAKDAMWNRG 189 Query: 121 AYLVQGAGHCGSCHTER 137 AYLVQG GHCGSCHT R Sbjct: 190 AYLVQGLGHCGSCHTPR 206