BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1861.p         (241 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08143220.1| (2Fe-2S)-binding domain protein [Pseudomonas ...   222   4e-56
ref|YP_001749694.1| 2Fe-2S iron-sulfur cluster binding domain-co...   219   3e-55
ref|YP_001267435.1| 2Fe-2S iron-sulfur cluster binding domain-co...   219   3e-55
ref|NP_745757.1| (2Fe-2S)-binding domain-containing protein [Pse...   219   3e-55
ref|YP_348204.1| ferredoxin [Pseudomonas fluorescens Pf0-1] >gi|...   218   4e-55

>ref|ZP_08143220.1| (2Fe-2S)-binding domain protein [Pseudomonas sp. TJI-51]
 gb|EGB95494.1| (2Fe-2S)-binding domain protein [Pseudomonas sp. TJI-51]
          Length = 151

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 114/151 (75%), Positives = 130/151 (86%)

Query: 38  MELQINDKTYQITSDAETPLLWVIRDELGMTGTKYGCGLAQCGACSVMVDGEVLRSCVMP 97
           MEL+IN KTYQ+ +DA+TPLLWVIRD+LG+TGTKYGCGLAQCGACSV+VDG V+R+CV P
Sbjct: 1   MELRINQKTYQVEADADTPLLWVIRDDLGLTGTKYGCGLAQCGACSVLVDGNVVRACVTP 60

Query: 98  VGAMAGRKVTTIEAVTADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATALLKQVAQPSDE 157
           V  + GR+VTTIEA+ ADPVGQ+VV AWV HQV QCGYCQSGQVMAATALLK   +PS E
Sbjct: 61  VAGVVGREVTTIEAIEADPVGQRVVTAWVDHQVAQCGYCQSGQVMAATALLKHTPKPSAE 120

Query: 158 QIVGAMVNLCRCGTYNAIKAAMHELSGGTGA 188
           QI  AMVNLCRCGTYNAI AAMH+L+ G  A
Sbjct: 121 QIDAAMVNLCRCGTYNAIHAAMHDLAQGEQA 151


>ref|YP_001749694.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein
           [Pseudomonas putida W619]
 gb|ACA73325.1| (2Fe-2S)-binding domain protein [Pseudomonas putida W619]
          Length = 151

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 128/151 (84%)

Query: 38  MELQINDKTYQITSDAETPLLWVIRDELGMTGTKYGCGLAQCGACSVMVDGEVLRSCVMP 97
           MEL+IN KTYQ+ +DA+TPLLWVIRD+LG+TGTKYGCGLAQCGACSV+VDG V+R+CV P
Sbjct: 1   MELRINQKTYQVEADADTPLLWVIRDDLGLTGTKYGCGLAQCGACSVLVDGNVVRACVTP 60

Query: 98  VGAMAGRKVTTIEAVTADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATALLKQVAQPSDE 157
           V  + GR+VTTIEA+  D VG++VV AWV HQV QCGYCQSGQVMAATALLK   QPSD 
Sbjct: 61  VAGVVGREVTTIEAIETDEVGKRVVAAWVEHQVAQCGYCQSGQVMAATALLKHAPQPSDA 120

Query: 158 QIVGAMVNLCRCGTYNAIKAAMHELSGGTGA 188
           QI  AMVNLCRCGTYNAI AAMHEL+ G  A
Sbjct: 121 QIDAAMVNLCRCGTYNAIHAAMHELAQGEKA 151


>ref|YP_001267435.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein
           [Pseudomonas putida F1]
 gb|ABQ78251.1| (2Fe-2S)-binding domain protein [Pseudomonas putida F1]
          Length = 151

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 130/151 (86%)

Query: 38  MELQINDKTYQITSDAETPLLWVIRDELGMTGTKYGCGLAQCGACSVMVDGEVLRSCVMP 97
           MEL+IN KTYQ+ +DA+TPLLWVIRD+LG+TGTKYGCGLAQCGACSV+VDG V+R+CV P
Sbjct: 1   MELRINQKTYQVEADADTPLLWVIRDDLGLTGTKYGCGLAQCGACSVLVDGNVVRACVTP 60

Query: 98  VGAMAGRKVTTIEAVTADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATALLKQVAQPSDE 157
           V  + GR+VTTIEA+ ADPVG++VV AW+ HQV QCGYCQSGQVMAATALLK   +PSD 
Sbjct: 61  VAGVVGREVTTIEAIEADPVGKRVVAAWIEHQVAQCGYCQSGQVMAATALLKHTPKPSDA 120

Query: 158 QIVGAMVNLCRCGTYNAIKAAMHELSGGTGA 188
           QI  AMVNLCRCGTYNAI AA+H+L+ G  A
Sbjct: 121 QIDAAMVNLCRCGTYNAIHAAVHDLAQGEQA 151


>ref|NP_745757.1| (2Fe-2S)-binding domain-containing protein [Pseudomonas putida
           KT2440]
 gb|AAN69221.1|AE016557_1 isoquinoline 1-oxidoreductase, alpha subunit, putative [Pseudomonas
           putida KT2440]
          Length = 151

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/151 (74%), Positives = 130/151 (86%)

Query: 38  MELQINDKTYQITSDAETPLLWVIRDELGMTGTKYGCGLAQCGACSVMVDGEVLRSCVMP 97
           MEL+IN KTYQ+ +DA+TPLLWVIRD+LG+TGTKYGCGLAQCGACSV+VDG V+R+CV P
Sbjct: 1   MELRINQKTYQVEADADTPLLWVIRDDLGLTGTKYGCGLAQCGACSVLVDGNVVRACVTP 60

Query: 98  VGAMAGRKVTTIEAVTADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATALLKQVAQPSDE 157
           V  + GR+VTTIEA+ ADPVG++VV AWV HQV QCGYCQSGQVMAATALLK   +PSD 
Sbjct: 61  VAGVVGREVTTIEAIEADPVGKRVVAAWVEHQVAQCGYCQSGQVMAATALLKHTPKPSDA 120

Query: 158 QIVGAMVNLCRCGTYNAIKAAMHELSGGTGA 188
           QI  AMVNLCRCGTYNAI AA+H+L+ G  A
Sbjct: 121 QIDAAMVNLCRCGTYNAIHAAVHDLAQGEQA 151


>ref|YP_348204.1| ferredoxin [Pseudomonas fluorescens Pf0-1]
 gb|ABA74214.1| putative isoquinoline 1-oxidoreductase, alpha subunit [Pseudomonas
           fluorescens Pf0-1]
          Length = 151

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query: 38  MELQINDKTYQITSDAETPLLWVIRDELGMTGTKYGCGLAQCGACSVMVDGEVLRSCVMP 97
           MEL+IN KTYQ+ +DA+TPLLWVIRD+LGMTGTKYGCGLAQCGACSV+VDG V+RSCV P
Sbjct: 1   MELRINQKTYQVDADADTPLLWVIRDDLGMTGTKYGCGLAQCGACSVLVDGNVVRSCVTP 60

Query: 98  VGAMAGRKVTTIEAVTADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATALLKQVAQPSDE 157
           V  + GR+VTTIEA+ AD VG++VV  WV  QV QCGYCQSGQVMAATALLKQ  +PSD 
Sbjct: 61  VAGVVGREVTTIEAIEADEVGKRVVSTWVDLQVAQCGYCQSGQVMAATALLKQNPKPSDA 120

Query: 158 QIVGAMVNLCRCGTYNAIKAAMHELSG 184
           QI  AMVNLCRCGTYNAI AA+HEL+G
Sbjct: 121 QIEAAMVNLCRCGTYNAIHAAVHELAG 147