BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1859.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777867.1| AraC family xylose operon transcription regu... 829 0.0 ref|YP_004753804.1| Xylose activator XylR (AraC family) [Collimo... 649 0.0 ref|ZP_04948784.1| Helix-turn-helix protein [Burkholderia dolosa... 556 e-156 ref|ZP_03266654.1| transcriptional regulator, AraC family [Burkh... 553 e-155 ref|ZP_02468249.1| xylose operon regluatory protein [Burkholderi... 551 e-154 >ref|YP_003777867.1| AraC family xylose operon transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65959.1| AraC family xylose operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 442 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 411/445 (92%), Positives = 425/445 (95%), Gaps = 4/445 (0%) Query: 1 MARYNST-NTRTARLTTPATRRHSVAKTPTVHRIALLFNGNKIFDREIISGIGEYISSTR 59 M RYNS+ + +TAR TP RR SVAK PTVHRIALLFNGNKIFDREII+GIGEYISSTR Sbjct: 1 MTRYNSSPDKKTARPATPPDRRQSVAKAPTVHRIALLFNGNKIFDREIIAGIGEYISSTR 60 Query: 60 ASWDLYLEEDFRCRPQGIERWAGHGIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYP 119 ASWDLYLEEDFRCRPQGIERWAGHGIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYP Sbjct: 61 ASWDLYLEEDFRCRPQGIERWAGHGIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYP 120 Query: 120 ANRPYVATDNYKMVKLAYDHLIEAGLQHFALYSLPESPCNRWAQERERIFTDLTGADGIT 179 ANRPYVATDNYKMVKLAYDHLIEAGLQHFAL+SLPES CNRWAQERERIFTDLTGADGI Sbjct: 121 ANRPYVATDNYKMVKLAYDHLIEAGLQHFALFSLPESDCNRWAQERERIFTDLTGADGIA 180 Query: 180 GHIYRGVGTSAQSWDAAVEQQIAWVRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQV 239 GHIYRGVGTSAQSWD AVEQQIAWVRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQV Sbjct: 181 GHIYRGVGTSAQSWDTAVEQQIAWVRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQV 240 Query: 240 ALIGIDNDPLARVLTRIPLSSVIQGSVEMGRTAAHLLHQMLHGARFPDTRIMVPPVGINV 299 ALIGIDNDPLARVLTRIPLSSVIQGSVEMGRTAAHLLHQMLHGARFPDTRIMVPPVGINV Sbjct: 241 ALIGIDNDPLARVLTRIPLSSVIQGSVEMGRTAAHLLHQMLHGARFPDTRIMVPPVGINV 300 Query: 300 LASSRHEVRNHPHVMQALHFIRQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDE 359 LASSRHEVRNHPHVMQALHFIRQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDE Sbjct: 301 LASSRHEVRNHPHVMQALHFIRQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDE 360 Query: 360 ILRFKLEAAKRMLEQAGSHAAEIAVSCGFTTVQYLHAVFKRELGCTPREYQEQFAAGLER 419 ILRFKL+AAKR+LEQAGSHAAEIAVSCGFT+VQY+HAVFKRELGCTPREYQEQFAAGLER Sbjct: 361 ILRFKLDAAKRLLEQAGSHAAEIAVSCGFTSVQYMHAVFKRELGCTPREYQEQFAAGLER 420 Query: 420 SAAPSAPAVRPKKKTTGPSLLTTTK 444 +AAP+A R KKK+ G +LL T+ Sbjct: 421 AAAPAA---RQKKKSAGTTLLEPTR 442 >ref|YP_004753804.1| Xylose activator XylR (AraC family) [Collimonas fungivorans Ter331] gb|AEK62981.1| Xylose activator XylR (AraC family) [Collimonas fungivorans Ter331] Length = 408 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 309/388 (79%), Positives = 343/388 (88%), Gaps = 1/388 (0%) Query: 27 TPTVHRIALLFNGNKIFDREIISGIGEYISSTRASWDLYLEEDFRCRPQGIERWAGHGII 86 T TVHRIALLFNGNKIFDR+II+GIGEY+SSTRASWDL+LEEDFRCR QGIERW GHGII Sbjct: 10 TRTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLFLEEDFRCRLQGIERWQGHGII 69 Query: 87 ADFDDPVTTAALEGVQLPVVAIGGSYADPSQYPANRPYVATDNYKMVKLAYDHLIEAGLQ 146 ADFDDP AAL V LPVVA+GGSYAD + YP + PYVATDN+K+VKLAYDHLIEAGLQ Sbjct: 70 ADFDDPEACAALSRVSLPVVAVGGSYADAADYPGDTPYVATDNFKLVKLAYDHLIEAGLQ 129 Query: 147 HFALYSLPESPCNRWAQERERIFTDLTGADGITGHIYRGVGTSAQSWDAAVEQQIAWVRS 206 FA +SLP++ NRWAQERE+ F L DG+ G IYRG+GTSA SWD AVEQQIAW+++ Sbjct: 130 RFACFSLPQADVNRWAQEREKAFESLMQRDGMQGEIYRGLGTSAPSWDTAVEQQIAWLQT 189 Query: 207 LPKPVGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARVLTRIPLSSVIQGSV 266 LPKP+GIIAVTDARARQLLQACL AGIAVPEQVALIGIDNDPLAR+LTR+PLSSVIQG+ Sbjct: 190 LPKPIGIIAVTDARARQLLQACLCAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTR 249 Query: 267 EMGRTAAHLLHQMLHGARFPDTRIMVPPVGINVLASSRHEVRNHPHVMQALHFIRQYACQ 326 EMGRTAAHLLHQMLHG R TRI+VPP GINVLASSRHE +HPHVMQA+HFIRQYACQ Sbjct: 250 EMGRTAAHLLHQMLHGGRLAGTRILVPPAGINVLASSRHEAPSHPHVMQAMHFIRQYACQ 309 Query: 327 GIKTDQVADYVGISRSSLEWYFRRELGRSVHDEILRFKLEAAKRMLEQAGSHA-AEIAVS 385 GIKT+QVADYVG+SRSSLEWYFRRELGRSVHDEILRFKL+ AK ML+ + AEIAVS Sbjct: 310 GIKTEQVADYVGVSRSSLEWYFRRELGRSVHDEILRFKLDVAKDMLQHKDQRSIAEIAVS 369 Query: 386 CGFTTVQYLHAVFKRELGCTPREYQEQF 413 CGFT+VQY+HAVFKRELGCTPREYQ++ Sbjct: 370 CGFTSVQYMHAVFKRELGCTPREYQDRL 397 >ref|ZP_04948784.1| Helix-turn-helix protein [Burkholderia dolosa AUO158] gb|EAY71955.1| Helix-turn-helix protein [Burkholderia dolosa AUO158] Length = 447 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 273/396 (68%), Positives = 318/396 (80%) Query: 17 PATRRHSVAKTPTVHRIALLFNGNKIFDREIISGIGEYISSTRASWDLYLEEDFRCRPQG 76 P T + T HRIALLFN NK++DREIISGIGEY+ STR +WDL+LE+DFRCR G Sbjct: 47 PETEMNRAPSAQTPHRIALLFNANKVYDREIISGIGEYLRSTRVAWDLFLEDDFRCRLAG 106 Query: 77 IERWAGHGIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYPANRPYVATDNYKMVKLA 136 IER+ G GIIADFDDP AL G LP+VA+G SY DP+QYP + PY+ATDN K+V LA Sbjct: 107 IERFDGDGIIADFDDPAVADALAGSPLPIVAVGSSYEDPTQYPDDLPYIATDNAKLVSLA 166 Query: 137 YDHLIEAGLQHFALYSLPESPCNRWAQERERIFTDLTGADGITGHIYRGVGTSAQSWDAA 196 Y HLI AGL HFA+YSLP + NRWAQ+RE F L ADG+ IYRG+ TSA +W+ A Sbjct: 167 YTHLIGAGLPHFAMYSLPVAQQNRWAQQRELAFDRLARADGLDAPIYRGLSTSASAWNHA 226 Query: 197 VEQQIAWVRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARVLTRI 256 +EQ I W+ +LPKPVG+IAVTDARAR LLQACL AGIAVPEQVA+IGIDNDPL R LTRI Sbjct: 227 IEQLIGWLNALPKPVGVIAVTDARARHLLQACLIAGIAVPEQVAIIGIDNDPLTRTLTRI 286 Query: 257 PLSSVIQGSVEMGRTAAHLLHQMLHGARFPDTRIMVPPVGINVLASSRHEVRNHPHVMQA 316 PLSSVIQG+ EMGRTAAHLLHQML GARFP RI+VPPVGINVL S+RHE PHVM+A Sbjct: 287 PLSSVIQGTEEMGRTAAHLLHQMLRGARFPGRRILVPPVGINVLESTRHEPLASPHVMRA 346 Query: 317 LHFIRQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDEILRFKLEAAKRMLEQAG 376 HFIRQYACQGIKT+QVADYVG+SRS LE +FRREL R+VH EILR KLEAAK +L Sbjct: 347 RHFIRQYACQGIKTEQVADYVGVSRSLLEEHFRRELQRTVHQEILRHKLEAAKALLAGRH 406 Query: 377 SHAAEIAVSCGFTTVQYLHAVFKRELGCTPREYQEQ 412 +AE+A+ CGFT++QY++AVF+RELGCTPRE+QE+ Sbjct: 407 VSSAEVAIRCGFTSLQYMYAVFRRELGCTPREFQER 442 >ref|ZP_03266654.1| transcriptional regulator, AraC family [Burkholderia sp. H160] gb|EEA01786.1| transcriptional regulator, AraC family [Burkholderia sp. H160] Length = 422 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 274/414 (66%), Positives = 323/414 (78%), Gaps = 5/414 (1%) Query: 7 TNTRTARLTTPATRRHSVAKTPTVHRIALLFNGNKIFDREIISGIGEYISSTRASWDLYL 66 T R+ TP T T HRIALLFN NK++DREII+GIG Y+ STR +WDL+L Sbjct: 3 TKARSPLTRTPLTAMTRPQAPQTTHRIALLFNANKVYDREIITGIGNYLLSTRVAWDLFL 62 Query: 67 EEDFRCRPQGIERWAGHGIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYPANRPYVA 126 EEDFRCR GI+R+ G GIIADFDDP AL LPVVA+G SY DP+QYP + PY+A Sbjct: 63 EEDFRCRLAGIQRFDGDGIIADFDDPAVDEALRDCPLPVVAVGSSYEDPTQYPTDLPYIA 122 Query: 127 TDNYKMVKLAYDHLIEAGLQHFALYSLPESPCNRWAQERERIFTDLTGADG-----ITGH 181 TDN K+V LAY HLI AGL++FALYSLP++ NRWAQ+RE F L ADG I Sbjct: 123 TDNSKLVSLAYTHLIGAGLENFALYSLPQAQENRWAQQRELAFGHLRSADGRSAAQIDSE 182 Query: 182 IYRGVGTSAQSWDAAVEQQIAWVRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQVAL 241 IYRG+ TSA SW+ A+EQ AW+R LPKPVGIIAVTDARAR LLQACL AGI VPE+VA+ Sbjct: 183 IYRGLSTSAPSWNQAIEQLTAWLRQLPKPVGIIAVTDARARHLLQACLIAGIPVPEEVAI 242 Query: 242 IGIDNDPLARVLTRIPLSSVIQGSVEMGRTAAHLLHQMLHGARFPDTRIMVPPVGINVLA 301 IGIDNDPL R LTRIPLSSVIQG+ EMGRTAAH+LHQMLHGARFP RI+VPPVGINVL Sbjct: 243 IGIDNDPLTRTLTRIPLSSVIQGTEEMGRTAAHILHQMLHGARFPGRRILVPPVGINVLE 302 Query: 302 SSRHEVRNHPHVMQALHFIRQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDEIL 361 S+RH+ P+VM+A HFIRQYACQGI+T+QVADYVG+SRSSLE YFRREL +VH EIL Sbjct: 303 STRHQPLASPYVMRARHFIRQYACQGIRTEQVADYVGVSRSSLEEYFRRELQCTVHQEIL 362 Query: 362 RFKLEAAKRMLEQAGSHAAEIAVSCGFTTVQYLHAVFKRELGCTPREYQEQFAA 415 R KL+ AK +L + + +AE+A+ CGFT++QY++AVF+RELGCTPREYQE+ A Sbjct: 363 RHKLDVAKTLLAKRDASSAEVAIRCGFTSLQYMYAVFRRELGCTPREYQERVGA 416 >ref|ZP_02468249.1| xylose operon regluatory protein [Burkholderia thailandensis MSMB43] Length = 397 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 271/396 (68%), Positives = 322/396 (81%), Gaps = 2/396 (0%) Query: 21 RHSVAKTPTVHRIALLFNGNKIFDREIISGIGEYISSTRASWDLYLEEDFRCRPQGIERW 80 R A+TP HRIALLFN NK++DREII GIG+Y+ STR +WDL+LE+DFRCR GIER+ Sbjct: 3 RAPSARTP--HRIALLFNANKVYDREIIGGIGDYLRSTRVAWDLFLEDDFRCRLAGIERF 60 Query: 81 AGHGIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYPANRPYVATDNYKMVKLAYDHL 140 G GIIADFDDP AL G LP+VA+G SY DP+QYPA+ PY+ATDN K+V LAY HL Sbjct: 61 DGDGIIADFDDPAVADALAGSPLPIVAVGSSYEDPAQYPADLPYIATDNAKLVSLAYTHL 120 Query: 141 IEAGLQHFALYSLPESPCNRWAQERERIFTDLTGADGITGHIYRGVGTSAQSWDAAVEQQ 200 I AGL FA+YSLP + NRWA++RER F L ADG+ +YRG+ TSA +W+ A+EQ Sbjct: 121 IGAGLPRFAMYSLPVARQNRWAEQRERAFDRLARADGLDAPVYRGLSTSASAWNHAIEQL 180 Query: 201 IAWVRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARVLTRIPLSS 260 I W+R+LPKPVG+IAVTDARAR LLQACL AGI VPEQVA++GIDNDPL R LTRIPLSS Sbjct: 181 IGWLRALPKPVGVIAVTDARARHLLQACLIAGIPVPEQVAIVGIDNDPLTRTLTRIPLSS 240 Query: 261 VIQGSVEMGRTAAHLLHQMLHGARFPDTRIMVPPVGINVLASSRHEVRNHPHVMQALHFI 320 VIQG+ EMGRTAAHLLHQML GARFP RI+VPPVGINVL S+RH+ PHVM+A HFI Sbjct: 241 VIQGTGEMGRTAAHLLHQMLGGARFPGRRILVPPVGINVLESTRHQPLASPHVMRARHFI 300 Query: 321 RQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDEILRFKLEAAKRMLEQAGSHAA 380 RQYACQGIKT+QVADYVG+SRS LE +FRREL R+VH EILR KLEAA+ +L + +A Sbjct: 301 RQYACQGIKTEQVADYVGVSRSLLEEHFRRELRRTVHQEILRHKLEAAQALLAGRHASSA 360 Query: 381 EIAVSCGFTTVQYLHAVFKRELGCTPREYQEQFAAG 416 E+A+ CGFT++QY+HAVF+RELGCTPREYQE+ A+ Sbjct: 361 EVAIRCGFTSLQYMHAVFRRELGCTPREYQERAASA 396