BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1857.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777868.1| D-xylose ABC transporter periplasmic protein... 606 e-171 ref|YP_004753802.1| Xylose ABC transporter periplasmic xylose-bi... 513 e-143 ref|YP_004353890.1| xylose ABC transporter substrate-binding pro... 484 e-135 ref|YP_235956.1| periplasmic binding protein/LacI transcriptiona... 483 e-134 gb|EGH09620.1| D-xylose ABC transporter periplasmic-D xylose bin... 483 e-134 >ref|YP_003777868.1| D-xylose ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65960.1| ABC-type D-xylose transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 336/338 (99%), Positives = 337/338 (99%) Query: 1 MKAMLKKTVLALMTVTTLSMVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKL 60 MKAMLKKTVLALMTVTTLSMVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKL Sbjct: 1 MKAMLKKTVLALMTVTTLSMVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKL 60 Query: 61 GAKVYVQSADASEQRQISQIENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDR 120 GAKVYVQSADASEQRQISQIENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDR Sbjct: 61 GAKVYVQSADASEQRQISQIENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDR 120 Query: 121 LILNADVDAYISFDNEKVGEMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKP 180 LILNADVDAYISFDNEKVGEMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKP Sbjct: 121 LILNADVDAYISFDNEKVGEMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKP 180 Query: 181 YIDKGDIKIVGQQWVKEWNPTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQK 240 YIDKGDIKIVGQQWVKEWNPTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQK Sbjct: 181 YIDKGDIKIVGQQWVKEWNPTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQK 240 Query: 241 LAGKVPVSGQDADLAAVKRVVAGTQTMTVYKPLKQIATEAANLSVQLARNEKPTYNAQYD 300 LAGKVPVSGQDADLAAVKRVVAGTQTMTVYKPLKQIATEAA LSV+LARNEKPTYNAQYD Sbjct: 241 LAGKVPVSGQDADLAAVKRVVAGTQTMTVYKPLKQIATEAAKLSVELARNEKPTYNAQYD 300 Query: 301 NGFKKVDSLLLKPILLTKENVKVLVDDGFYTQAQIDGR 338 NGFKKVDSLLLKPILLTKENVKVLVDDGFYTQAQIDGR Sbjct: 301 NGFKKVDSLLLKPILLTKENVKVLVDDGFYTQAQIDGR 338 >ref|YP_004753802.1| Xylose ABC transporter periplasmic xylose-binding protein xylF [Collimonas fungivorans Ter331] gb|AEK62979.1| Xylose ABC transporter, periplasmic xylose-binding protein xylF [Collimonas fungivorans Ter331] Length = 338 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 277/338 (81%), Positives = 309/338 (91%) Query: 1 MKAMLKKTVLALMTVTTLSMVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKL 60 M +K++ A+M V ++ + +AMAD+KNPKIGFSIDDLRVERWARDRDFF AAA+KL Sbjct: 1 MNKFKRKSLFAVMAVAVFALGSTAAMADSKNPKIGFSIDDLRVERWARDRDFFVAAADKL 60 Query: 61 GAKVYVQSADASEQRQISQIENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDR 120 GAKV+VQSADASEQRQI+QIENLISRGVDVIVIVPFNATVLTNT+KEAKKAGIKV+SYDR Sbjct: 61 GAKVFVQSADASEQRQIAQIENLISRGVDVIVIVPFNATVLTNTVKEAKKAGIKVVSYDR 120 Query: 121 LILNADVDAYISFDNEKVGEMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKP 180 LILNAD+DAYISFDNEKVGEMQAEG+LK + KGN++LLGGSPTDNNAKM REGQ+K LKP Sbjct: 121 LILNADIDAYISFDNEKVGEMQAEGVLKAQPKGNYYLLGGSPTDNNAKMLREGQLKVLKP 180 Query: 181 YIDKGDIKIVGQQWVKEWNPTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQK 240 IDKGDIKIVGQQWVK+W+ TEALSIVENALTANNNKIDAIVASNDGTAGGAIQALA+QK Sbjct: 181 SIDKGDIKIVGQQWVKDWSATEALSIVENALTANNNKIDAIVASNDGTAGGAIQALASQK 240 Query: 241 LAGKVPVSGQDADLAAVKRVVAGTQTMTVYKPLKQIATEAANLSVQLARNEKPTYNAQYD 300 +AGKVPVSGQDADLAAVKRV+AGTQ MTVYKPLK IA+EAA LSVQLARNEKP YN+QY+ Sbjct: 241 MAGKVPVSGQDADLAAVKRVIAGTQAMTVYKPLKLIASEAAKLSVQLARNEKPAYNSQYE 300 Query: 301 NGFKKVDSLLLKPILLTKENVKVLVDDGFYTQAQIDGR 338 NG KKVD++LLKP LT NVK+LVDDGFYTQAQI + Sbjct: 301 NGVKKVDTILLKPTPLTSANVKLLVDDGFYTQAQISSK 338 >ref|YP_004353890.1| xylose ABC transporter substrate-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68886.1| Monosaccharide-transporting ATPase (D-xylose ABC transporter, periplasmic component) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 333 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 258/313 (82%), Positives = 287/313 (91%) Query: 26 MADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLIS 85 MADA +PKIGFSIDDLR+ERW+RDRD+F AAAEKL AKV+VQSADA+EQ+QISQIENLIS Sbjct: 21 MADAAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSADANEQKQISQIENLIS 80 Query: 86 RGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEG 145 RGVDVIVIVPFNATVLTN + EAKKAGIKV+SYDRLILNAD+DAYISFDNEKVGEMQA G Sbjct: 81 RGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNADIDAYISFDNEKVGEMQASG 140 Query: 146 ILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEALS 205 +LK KGN+FLLGG+PTDNNAK+ REGQMK L+P IDKGDIKIVGQQWVKEWNPTEALS Sbjct: 141 VLKAAPKGNYFLLGGAPTDNNAKVLREGQMKVLQPAIDKGDIKIVGQQWVKEWNPTEALS 200 Query: 206 IVENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGTQ 265 IVENALT NNNKID IVASND TAGGAIQALAAQK+AGKVP+SGQDADLAAVKRV+ GTQ Sbjct: 201 IVENALTRNNNKIDGIVASNDATAGGAIQALAAQKMAGKVPISGQDADLAAVKRVIDGTQ 260 Query: 266 TMTVYKPLKQIATEAANLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKENVKVLV 325 TMTVYKPLK IA+EAA LSVQLARNEKPT+++QYDNG KKVD++LL P LTK+N+ +L Sbjct: 261 TMTVYKPLKLIASEAAKLSVQLARNEKPTFSSQYDNGSKKVDTILLTPTPLTKDNIDLLE 320 Query: 326 DDGFYTQAQIDGR 338 DGFYT+AQI G+ Sbjct: 321 KDGFYTKAQIAGQ 333 >ref|YP_235956.1| periplasmic binding protein/LacI transcriptional regulator [Pseudomonas syringae pv. syringae B728a] gb|AAY37918.1| xylose-binding protein [Pseudomonas syringae pv. syringae B728a] Length = 333 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 257/313 (82%), Positives = 288/313 (92%) Query: 26 MADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLIS 85 MAD+ +PKIGFSIDDLR+ERW+RDRD+F AAAEKL AKV+VQSADA+EQ+QISQIENLIS Sbjct: 21 MADSAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSADANEQKQISQIENLIS 80 Query: 86 RGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEG 145 RGVDVIVIVPFNATVLTN + EAKKAGIKV+SYDRLILNAD+DAYISFDNEKVGEMQA G Sbjct: 81 RGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNADIDAYISFDNEKVGEMQANG 140 Query: 146 ILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEALS 205 +LK KGN+FLLGG+PTDNNAK+ REGQMKAL+P ID+GDIKIVGQQWVKEWNPTEALS Sbjct: 141 VLKAAPKGNYFLLGGAPTDNNAKILREGQMKALQPAIDRGDIKIVGQQWVKEWNPTEALS 200 Query: 206 IVENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGTQ 265 IVENALT NNNKID IVASND TAGGAIQALAAQKLAGKVP+SGQDADLAAVKRV+ GTQ Sbjct: 201 IVENALTRNNNKIDGIVASNDATAGGAIQALAAQKLAGKVPISGQDADLAAVKRVIDGTQ 260 Query: 266 TMTVYKPLKQIATEAANLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKENVKVLV 325 TMTVYKPLK IATEAA LSVQLARNEKP ++++YDNG K+VD++LL P LTK+N+ +L Sbjct: 261 TMTVYKPLKLIATEAAKLSVQLARNEKPDFSSKYDNGSKQVDTILLTPTALTKDNIDLLE 320 Query: 326 DDGFYTQAQIDGR 338 DGFYT+AQIDG+ Sbjct: 321 KDGFYTKAQIDGQ 333 >gb|EGH09620.1| D-xylose ABC transporter periplasmic-D xylose binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 333 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 257/313 (82%), Positives = 286/313 (91%) Query: 26 MADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVYVQSADASEQRQISQIENLIS 85 MADA +PKIGFSIDDLR+ERW+RDRD+F AAAEKL AKV+VQSADA+EQ+QISQIENLIS Sbjct: 21 MADAAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSADANEQKQISQIENLIS 80 Query: 86 RGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEG 145 RGVDVIVIVPFNATVLTN + EAKKAGIK++SYDRLILNAD+DAYISFDNEKVGEMQA G Sbjct: 81 RGVDVIVIVPFNATVLTNAVAEAKKAGIKIVSYDRLILNADIDAYISFDNEKVGEMQASG 140 Query: 146 ILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKPYIDKGDIKIVGQQWVKEWNPTEALS 205 +L+ KGN+FLLGG+PTDNNAK+ REGQMK L+P IDKGDIKIVGQQWVKEWNPTEALS Sbjct: 141 VLQAAPKGNYFLLGGAPTDNNAKILREGQMKVLQPAIDKGDIKIVGQQWVKEWNPTEALS 200 Query: 206 IVENALTANNNKIDAIVASNDGTAGGAIQALAAQKLAGKVPVSGQDADLAAVKRVVAGTQ 265 IVENALT N+NKID IVASND TAGGAIQALAAQKLAGKVP+SGQDADLAAVKRV+ GTQ Sbjct: 201 IVENALTRNDNKIDGIVASNDATAGGAIQALAAQKLAGKVPISGQDADLAAVKRVIDGTQ 260 Query: 266 TMTVYKPLKQIATEAANLSVQLARNEKPTYNAQYDNGFKKVDSLLLKPILLTKENVKVLV 325 TMTVYKPLK IATEAA LSVQLARNEKPT+++QYDNG KKVD++LL P LTK N+ +L Sbjct: 261 TMTVYKPLKLIATEAAKLSVQLARNEKPTFSSQYDNGSKKVDTILLTPTPLTKANIDLLE 320 Query: 326 DDGFYTQAQIDGR 338 DGFYT+AQI G+ Sbjct: 321 KDGFYTKAQIGGQ 333